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Old   July 9, 2012, 13:31
Default Can't find files when install OF2.1.1 on Mac
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hello everyone,
This day i tried to install OF2.1.1 on Mac, I followed the instruction as posted
http://openfoamwiki.net/index.php/Ho...enFOAM_v21_Mac
the first problem is I do not know what the measning of "Add executive rights to a python script like this:"
but I run the commands just as the attached picture showed .


when I run the source command "~ of$ . OpenFOAM/OpenFOAM-2.1.1/etc/bashrc"
it said that like this

of$ . OpenFOAM/OpenFOAM-2.1.1/etc/bashrc
-bash: /Users/of/OpenFOAM/OpenFOAM-2.1.1/OpenFOAM-2.1.1/bin/foamEtcFile: No such file or directory
-bash: /Users/of/OpenFOAM/OpenFOAM-2.1.1/OpenFOAM-2.1.1/bin/foamCleanPath: No such file or directory
-bash: /Users/of/OpenFOAM/OpenFOAM-2.1.1/OpenFOAM-2.1.1/bin/foamCleanPath: No such file or directory
-bash: /Users/of/OpenFOAM/OpenFOAM-2.1.1/OpenFOAM-2.1.1/bin/foamCleanPath: No such file or directory
-bash: /Users/of/OpenFOAM/OpenFOAM-2.1.1/OpenFOAM-2.1.1/bin/foamCleanPath: No such file or directory
-bash: /Users/of/OpenFOAM/OpenFOAM-2.1.1/OpenFOAM-2.1.1/etc/config/settings.sh: No such file or directory
-bash: /Users/of/OpenFOAM/OpenFOAM-2.1.1/OpenFOAM-2.1.1/etc/config/aliases.sh: No such file or directory
-bash: /Users/of/OpenFOAM/OpenFOAM-2.1.1/OpenFOAM-2.1.1/bin/foamEtcFile: No such file or directory
-bash: /Users/of/OpenFOAM/OpenFOAM-2.1.1/OpenFOAM-2.1.1/bin/foamEtcFile: No such file or directory
-bash: /Users/of/OpenFOAM/OpenFOAM-2.1.1/OpenFOAM-2.1.1/bin/foamCleanPath: No such file or directory
-bash: /Users/of/OpenFOAM/OpenFOAM-2.1.1/OpenFOAM-2.1.1/bin/foamCleanPath: No such file or directory
-bash: /Users/of/OpenFOAM/OpenFOAM-2.1.1/OpenFOAM-2.1.1/bin/foamCleanPath: No such file or directory

I checked the ~/bin folder, there are exist the above files.
Can somebody tell me what's wrong with me? THank you!
Wei
Attached Images
File Type: png 500px-Howto_install_OpenFOAM_v21_Mac-images-024.ppm.png (95.0 KB, 8 views)

Last edited by hewei; July 9, 2012 at 14:19.
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Old   July 9, 2012, 17:25
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Greetings Wei,

I've updated a bit the tutorial to make it more explicit about the details related to the python script you mentioned.

As for the error output you've posted, the "OpenFOAM-2.1.1" folder is repeated:
Quote:
/Users/of/OpenFOAM/OpenFOAM-2.1.1/OpenFOAM-2.1.1/bin/foamEtcFile
I think that you didn't do properly the steps from section "2.4 Final preparations before building". Either that, or you modified something else in OpenFOAM's "etc/bashrc" file.

Best regards,
Bruno
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Old   July 10, 2012, 03:44
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Hello Bruno,
I did as your new instructions,but at the step 2.5 source bashrc, it meet some problems
hermes:~ of$ ./OpenFOAM/OpenFOAM-2.1.1/etc/bashrc
-bash: ./OpenFOAM/OpenFOAM-2.1.1/etc/bashrc: Permission denied

I then directly go in the directory of OpenFOAM-2.1.1 and run the command
. etc/bashrc and source etc/bashrc

OpenFOAM-2.1.1 of$ source etc/bashrc
-bash: /Users/of/OpenFOAM/OpenFOAM-2.1.1/OpenFOAM-2.1.1/bin/foamEtcFile: No such file or directory
-bash: /Users/of/OpenFOAM/OpenFOAM-2.1.1/OpenFOAM-2.1.1/bin/foamCleanPath: No such file or directory
-bash: /Users/of/OpenFOAM/OpenFOAM-2.1.1/OpenFOAM-2.1.1/bin/foamCleanPath: No such file or directory
-bash: /Users/of/OpenFOAM/OpenFOAM-2.1.1/OpenFOAM-2.1.1/bin/foamCleanPath: No such file or directory
-bash: /Users/of/OpenFOAM/OpenFOAM-2.1.1/OpenFOAM-2.1.1/bin/foamCleanPath: No such file or directory
-bash: /Users/of/OpenFOAM/OpenFOAM-2.1.1/OpenFOAM-2.1.1/etc/config/settings.sh: No such file or directory
-bash: /Users/of/OpenFOAM/OpenFOAM-2.1.1/OpenFOAM-2.1.1/etc/config/aliases.sh: No such file or directory
-bash: /Users/of/OpenFOAM/OpenFOAM-2.1.1/OpenFOAM-2.1.1/bin/foamEtcFile: No such file or directory
-bash: /Users/of/OpenFOAM/OpenFOAM-2.1.1/OpenFOAM-2.1.1/bin/foamEtcFile: No such file or directory
-bash: /Users/of/OpenFOAM/OpenFOAM-2.1.1/OpenFOAM-2.1.1/bin/foamCleanPath: No such file or directory
-bash: /Users/of/OpenFOAM/OpenFOAM-2.1.1/OpenFOAM-2.1.1/bin/foamCleanPath: No such file or directory
-bash: /Users/of/OpenFOAM/OpenFOAM-2.1.1/OpenFOAM-2.1.1/bin/foamCleanPath: No such file or directory

now I really do not know what's the reason.
Wei

Quote:
Originally Posted by wyldckat View Post
Greetings Wei,

I've updated a bit the tutorial to make it more explicit about the details related to the python script you mentioned.

As for the error output you've posted, the "OpenFOAM-2.1.1" folder is repeated:
I think that you didn't do properly the steps from section "2.4 Final preparations before building". Either that, or you modified something else in OpenFOAM's "etc/bashrc" file.

Best regards,
Bruno
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Old   July 10, 2012, 04:17
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Can you attach your "bashrc" file from OpenFOAM's folder to your next post?
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Old   July 10, 2012, 04:54
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Quote:
Originally Posted by wyldckat View Post
Can you attach your "bashrc" file from OpenFOAM's folder to your next post?
here is the bashrc

#----------------------------------*-sh-*--------------------------------------
# ========= |
# \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
# \\ / O peration |
# \\ / A nd | Copyright (C) 2011 OpenFOAM Foundation
# \\/ M anipulation |
#------------------------------------------------------------------------------
# License
# This file is part of OpenFOAM.
#
# OpenFOAM is free software: you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
# for more details.
#
# You should have received a copy of the GNU General Public License
# along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
#
# File
# etc/bashrc
#
# Description
# Startup file for OpenFOAM
# Sourced from ~/.profile or ~/.bashrc
# Should be usable by any POSIX-compliant shell (eg, ksh)
#
#------------------------------------------------------------------------------

export WM_PROJECT=OpenFOAM
export WM_PROJECT_VERSION=2.1.1

################################################## ##############################
# USER EDITABLE PART: Changes made here may be lost with the next upgrade
#
# either set $FOAM_INST_DIR before sourcing this file or set
# 'foamInstall' below to where OpenFOAM is installed
#
# Location of the OpenFOAM installation
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
foamInstall=$HOME/$WM_PROJECT
# foamInstall=~$WM_PROJECT
# foamInstall=/opt/$WM_PROJECT
# foamInstall=/usr/local/$WM_PROJECT
#
# END OF (NORMAL) USER EDITABLE PART
################################################## ##############################
ulimit -n 1024
export WM_NCOMPPROCS=4
#
# These are the defaults for this version which should generally be
# overridden from the prefs.sh file or from command-line specification
#
#- note the location for later use (eg, in job scripts)
: ${FOAM_INST_DIR:=$foamInstall}; export FOAM_INST_DIR

#- Compiler location:
# foamCompiler= system | ThirdParty (OpenFOAM)
foamCompiler=system

#- Compiler:
# WM_COMPILER = Gcc | Gcc43 | Gcc44 | Gcc45 | Gcc46 | Clang | Icc (Intel icc)
export WM_COMPILER=Gcc46
unset WM_COMPILER_ARCH WM_COMPILER_LIB_ARCH

#- Architecture:
# WM_ARCH_OPTION = 32 | 64
export WM_ARCH_OPTION=64

#- Precision:
# WM_PRECISION_OPTION = DP | SP
export WM_PRECISION_OPTION=DP

#- Optimised, debug, profiling:
# WM_COMPILE_OPTION = Opt | Debug | Prof
export WM_COMPILE_OPTION=Opt

#- MPI implementation:
# WM_MPLIB = SYSTEMOPENMPI | OPENMPI | MPICH | MPICH-GM | HPMPI
# | GAMMA | MPI | QSMPI
export WM_MPLIB=OPENMPI

#- Operating System:
# WM_OSTYPE = POSIX | ???
export WM_OSTYPE=POSIX

#- Floating-point signal handling:
# set or unset
export FOAM_SIGFPE=

#- memory initialisation:
# set or unset
#export FOAM_SETNAN=


################################################## ##############################

# The old dirs to be cleaned from the various environment variables
# - remove anything under top-level directory.
# NB: the WM_PROJECT_INST_DIR might not be identical between versions
foamOldDirs="$FOAM_INST_DIR $WM_PROJECT_SITE $HOME/$WM_PROJECT/$USER"
if [ "$WM_PROJECT_INST_DIR" != "$FOAM_INST_DIR" ]
then
foamOldDirs="$WM_PROJECT_INST_DIR $foamOldDirs"
fi


# Location of installation
# ~~~~~~~~~~~~~~~~~~~~~~~~
export WM_PROJECT_INST_DIR=$FOAM_INST_DIR
export WM_PROJECT_DIR=$WM_PROJECT_INST_DIR/$WM_PROJECT-$WM_PROJECT_VERSION

# Location of third-party software
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
export WM_THIRD_PARTY_DIR=$WM_PROJECT_INST_DIR/ThirdParty-$WM_PROJECT_VERSION

# Location of site-specific templates etc
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# unset is equivalent to $WM_PROJECT_INST_DIR/site
if [ -d "$WM_PROJECT_SITE" ]
then
export WM_PROJECT_SITE
else
unset WM_PROJECT_SITE
fi

# Location of user files
# ~~~~~~~~~~~~~~~~~~~~~~
export WM_PROJECT_USER_DIR=$HOME/$WM_PROJECT/$USER-$WM_PROJECT_VERSION


# Source files, possibly with some verbosity
_foamSource()
{
while [ $# -ge 1 ]
do
[ "$FOAM_VERBOSE" -a "$PS1" ] && echo "Sourcing: $1"
. $1
shift
done
}

# Evaluate command-line parameters
_foamEval()
{
while [ $# -gt 0 ]
do
case "$1" in
-*)
# stray option (not meant for us here) -> get out
break
;;
*=)
# name= -> unset name
[ "$FOAM_VERBOSE" -a "$PS1" ] && echo "unset ${1%=}"
eval "unset ${1%=}"
;;
*=*)
# name=value -> export name=value
[ "$FOAM_VERBOSE" -a "$PS1" ] && echo "export $1"
eval "export $1"
;;
*)
# filename: source it
if [ -f "$1" ]
then
_foamSource "$1"
else
_foamSource `$WM_PROJECT_DIR/bin/foamEtcFile -silent "$1"`
fi
;;
esac
shift
done
}


# Add in preset user or site preferences:
_foamSource `$WM_PROJECT_DIR/bin/foamEtcFile prefs.sh`

# Evaluate command-line parameters and record settings for later
# these can be used to set/unset values, or specify alternative pref files
export FOAM_SETTINGS="$@"
_foamEval $@

# Clean standard environment variables (PATH, LD_LIBRARY_PATH, MANPATH)
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~
foamClean=$WM_PROJECT_DIR/bin/foamCleanPath

#- Clean PATH
cleaned=`$foamClean "$PATH" "$foamOldDirs"` && PATH="$cleaned"

#- Clean LD_LIBRARY_PATH
cleaned=`$foamClean "$LD_LIBRARY_PATH" "$foamOldDirs"` \
&& LD_LIBRARY_PATH="$cleaned"

#- Clean MANPATH
cleaned=`$foamClean "$MANPATH" "$foamOldDirs"` && MANPATH="$cleaned"
if [[ `uname -s` == "Darwin" ]]
then
cleaned=`$foamClean "$DYLD_LIBRARY_PATH" "$foamOldDirs"` && DYLD_LIBRARY_PATH="$cleaned"
fi

export PATH LD_LIBRARY_PATH MANPATH


# Source project setup files
# ~~~~~~~~~~~~~~~~~~~~~~~~~~
_foamSource $WM_PROJECT_DIR/etc/config/settings.sh
_foamSource $WM_PROJECT_DIR/etc/config/aliases.sh


# Source user setup files for optional packages
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_foamSource `$WM_PROJECT_DIR/bin/foamEtcFile config/paraview.sh`
_foamSource `$WM_PROJECT_DIR/bin/foamEtcFile config/ensight.sh`


# Clean environment paths again. Only remove duplicates
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~
#- Clean PATH
cleaned=`$foamClean "$PATH"` && PATH="$cleaned"

#- Clean LD_LIBRARY_PATH
cleaned=`$foamClean "$LD_LIBRARY_PATH"` && LD_LIBRARY_PATH="$cleaned"

#- Clean MANPATH (trailing ':' to find system pages)
cleaned=`$foamClean "$MANPATH"`: && MANPATH="$cleaned"

export PATH LD_LIBRARY_PATH MANPATH

#- Clean LD_PRELOAD
if [ -n "$LD_PRELOAD" ]
then
cleaned=`$foamClean "$LD_PRELOAD"` && LD_PRELOAD="$cleaned"
export LD_PRELOAD
fi


# cleanup environment:
# ~~~~~~~~~~~~~~~~~~~~
unset cleaned foamClean foamInstall foamOldDirs
unset _foamSource _foamEval
export WM_CC='gcc-mp-4.6'
export WM_CXX='g++-mp-4.6'
# ----------------------------------------------------------------- end-of-file
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Old   July 10, 2012, 05:05
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Mmm... nothing seems to have been modified in this file.

OK, what do these commands output, after you've done "source etc/bashrc":
Code:
echo $WM_PROJECT_INST_DIR
ls -l ~/OpenFOAM
ls -l ~/OpenFOAM/OpenFOAM-2.1.1
ls -l ~/OpenFOAM/OpenFOAM-2.1.1/OpenFOAM-2.1.1
The first one indicates the folder where it expects to find "OpenFOAM-2.1.1".
The second one is for knowing whether the folder "OpenFOAM-2.1.1" is located there or if there is a link there instead.
The third one is to check what's inside the expected folder.
The fourth one is to confirm if there is something there or not.

By the way, do you have any other OpenFOAM version installed in your machine? Or in other words, does you "~/.bashrc" file already have any other reference to other OpenFOAM installations?
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Old   July 10, 2012, 05:14
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Hi Bruno,
I am now trying another way, I do like this, first setup a file .profile,
write some commands like this

export FOAM_INST_DIR=/Users/of/OpenFOAM
foamDotFile=$FOAM_INST_DIR/OpenFOAM-2.1.1/etc/bashrc
[ -f $foamDotFile ] && source $foamDotFile


then go to the directory of OpenFOAM-2.1.1 and run ./Allwmake,
it works,
I am waiting for the result now. and give a respond as soon as possible.

Thank you very much,
Wei.


Quote:
Originally Posted by wyldckat View Post
Mmm... nothing seems to have been modified in this file.

OK, what do these commands output, after you've done "source etc/bashrc":
Code:
echo $WM_PROJECT_INST_DIR
ls -l ~/OpenFOAM
ls -l ~/OpenFOAM/OpenFOAM-2.1.1
ls -l ~/OpenFOAM/OpenFOAM-2.1.1/OpenFOAM-2.1.1
The first one indicates the folder where it expects to find "OpenFOAM-2.1.1".
The second one is for knowing whether the folder "OpenFOAM-2.1.1" is located there or if there is a link there instead.
The third one is to check what's inside the expected folder.
The fourth one is to confirm if there is something there or not.

By the way, do you have any other OpenFOAM version installed in your machine? Or in other words, does you "~/.bashrc" file already have any other reference to other OpenFOAM installations?
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Old   July 10, 2012, 05:36
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Quote:
Originally Posted by hewei View Post
Hi Bruno,
I am now trying another way, I do like this, first setup a file .profile,
write some commands like this

export FOAM_INST_DIR=/Users/of/OpenFOAM
foamDotFile=$FOAM_INST_DIR/OpenFOAM-2.1.1/etc/bashrc
[ -f $foamDotFile ] && source $foamDotFile


then go to the directory of OpenFOAM-2.1.1 and run ./Allwmake,
it works,
I am waiting for the result now. and give a respond as soon as possible.

Thank you very much,
Wei.
OpenFOAM-2.1.1 of$ echo $WM_PROJECT_INST_DIR
/Users/of/OpenFOAM
hermes:OpenFOAM-2.1.1 of$ ls -l ~/OpenFOAM
lrwxr-xr-x 1 of staff 22 Jul 9 18:38 /Users/of/OpenFOAM -> /Volumes/OpenFOAM-v2.1
hermes:OpenFOAM-2.1.1 of$ ls -l ~/OpenFOAM/OpenFOAM-2.1.1
total 200
-rwxr-xr-x@ 1 of staff 923 May 24 16:51 Allwmake
-rw-r--r--@ 1 of staff 35647 May 24 16:51 COPYING
-rw-r--r--@ 1 of staff 4174 Jan 1 2012 OpenFOAM-2.1.x-Mac-gcc46.patch
-rw-r--r--@ 1 of staff 37974 Jan 1 2012 OpenFOAM-2.1.x-Mac.patch
-rw-r--r--@ 1 of staff 6522 May 24 16:51 README.html
-rw-r--r--@ 1 of staff 1585 May 24 16:51 README.org
drwxr-xr-x@ 5 of staff 204 May 24 16:51 applications
drwxr-xr-x@ 3 of staff 2176 Jul 10 09:21 bin
drwxr-xr-x@ 6 of staff 272 May 24 16:51 doc
drwxr-xr-x@ 5 of staff 340 Jul 10 10:38 etc
drwxr-xr-x@ 32 of staff 1122 May 24 16:51 src
drwxr-xr-x@ 16 of staff 646 May 24 16:51 tutorials
drwxr-xr-x@ 6 of staff 816 Jul 10 11:06 wmake
hermes:OpenFOAM-2.1.1 of$ ls -l ~/OpenFOAM/OpenFOAM-2.1.1/OpenFOAM-2.1.1
ls: /Users/of/OpenFOAM/OpenFOAM-2.1.1/OpenFOAM-2.1.1: No such file or directory

OMG!!the above two methods are all failed. It seems there is no OpenFOAM-2.1.1 in the folder of "Users/of/OpenFOAM/OpenFOAM-2.1.1/"
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Old   July 10, 2012, 09:09
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Hi Wei,

OK, there doesn't seem to be a problem with the linking of the folders.

I forgot to ask, but what do these output:
Code:
echo $FOAM_INST_DIR
echo $WM_PROJECT_VERSION
echo $WM_PROJECT_INST_DIR
echo $WM_PROJECT_DIR
And you didn't write about whether you had other OpenFOAM installations or not...

Best regards,
Bruno
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Old   July 11, 2012, 10:19
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Hello Bruno and others warm heart friends

Sorry not reply you timely.there is no other version OF installed before(at that time am already crazy and confused in my brain).

Alter struggles too much hours, I eventually find the big "bug" of my computer that, there is no exist Xcode at all!!! I thought if I run the commands in step 1 2 and 3 is enough, but it seems not suitable to me.
After modified the bashrc, and source it ,it maybe occur sth

. OpenFOAM/OpenFOAM-2.1.1/etc/bashrc
Unknown WM_ARCH_OPTION 64export, should be 32 or 64

then I just deleted the "export" in bashrc.

After drinking too much cafe, the OpenFOAM works very well.



Quote:
Originally Posted by wyldckat View Post
Hi Wei,

OK, there doesn't seem to be a problem with the linking of the folders.

I forgot to ask, but what do these output:
Code:
echo $FOAM_INST_DIR
echo $WM_PROJECT_VERSION
echo $WM_PROJECT_INST_DIR
echo $WM_PROJECT_DIR
And you didn't write about whether you had other OpenFOAM installations or not...

Best regards,
Bruno
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