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Old   March 11, 2013, 15:33
Default install OpenFOAM v21 on Mac 10.6.8
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nataliya
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I tried to install OpenFOAM v21 Mac 10.6.8 in accordance with following in http://openfoamwiki.net/index.php/Ho...enFOAM_v21_Mac.
Then, I got
Code:
timon111:OpenFOAM-v2.1 nat$ ls -l
total 170360 
drwxr-xr-x@ 9 nat  staff       544 11 mar 18:29 OpenFOAM-2.1.0
-rw-r--r--@ 1 nat  staff  32518358 11 mar 18:25 OpenFOAM-2.1.0.tgz
-rw-r--r--@ 1 nat  staff      4174 11 mar 18:17 OpenFOAM-2.1.x-Mac-gcc46.patch
-rw-r--r--@ 1 nat  staff     37974 11 mar 18:17 OpenFOAM-2.1.x-Mac.patch
-rw-r--r--@ 1 nat  staff     16264 11 mar 18:17 OpenFOAM-2.1.x-gcc42.patch
drwxr-xr-x@ 6 nat  staff       612 11 mar 18:27 ThirdParty-2.1.0
-rw-r--r--@ 1 nat  staff      3053 11 mar 18:16 ThirdParty-2.1.0-Mac.patch
-rw-r--r--@ 1 nat  staff  54629903 11 mar 18:26 ThirdParty-2.1.0.tgz
in compliance with openfoamwiki prescriptions.
Then I perfomed these operations
Code:
timon111:OpenFOAM-v2.1 nat$ mv ThirdParty-2.1.0.tgz ThirdParty-2.1.0
timon111:OpenFOAM-v2.1 nat$ mv OpenFOAM-2.1.x-Mac.patch OpenFOAM-2.1.0
timon111:OpenFOAM-v2.1 nat$ mv OpenFOAM-2.1.x-gcc42.patch OpenFOAM-2.1.0
timon111:OpenFOAM-v2.1 nat$ cd OpenFOAM-2.1.0
timon111:OpenFOAM-2.1.0 nat$ ls bin/addr2line4Mac.py 
bin/addr2line4Mac.py
timon111:OpenFOAM-2.1.0 nat$ ls -l bin/addr2line4Mac.py 
-rw-r--r--  1 nat  staff  737 11 mar 18:34 bin/addr2line4Mac.py
timon111:OpenFOAM-2.1.0 nat$ chmod a+x bin/addr2line4Mac.py 
timon111:OpenFOAM-2.1.0 nat$ ls -l bin/addr2line4Mac.py 
-rwxr-xr-x  1 nat  staff  737 11 mar 18:34 bin/addr2line4Mac.py
Then, they proposed
Code:
                    
mon111:OpenFOAM-2.1.0 nat$ patch -p1 < OpenFOAM-2.1.x-Mac-gcc46.patch
but they moved into OpenFOAM-2.1.0 the
Code:
OpenFOAM-2.1.x-gcc42.patch OpenFOAM-2.1.0
and not 46. So, I moved there also 46
Code:
                    
timon111:OpenFOAM-v2.1 nat$ mv OpenFOAM-2.1.x-Mac-gcc46.patch OpenFOAM-2.1.0
timon111:OpenFOAM-2.1.0 nat$ patch -p1 < OpenFOAM-2.1.x-Mac-gcc46.patch
Finally, I got the error
Code:
                    
-bash: /Users/nat/Gcc46/Gcc46-2.1.0/bin/foamCleanPath: No such file or directory
Is anybody could explain me the problem?Please.
Thanks
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Old   March 11, 2013, 18:40
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Quote:
Originally Posted by ciaonataha View Post
Finally, I got the error
Code:
                    
-bash: /Users/nat/Gcc46/Gcc46-2.1.0/bin/foamCleanPath: No such file or directory
Is anybody could explain me the problem?Please.
Thanks
a) what gives you that error (such information is always good)
b) the path should read /Users/nat/OpenFOAM/OpenFOAM-2.1.0/bin/foamCleanPath (THAT file should be there). My guess is that instead of setting WM_COMPILER to Gcc46 you set WM_PROJECT (an that variable should NEVER be altered) somewhere before (probably at the part where they explain changing etc/bashrc)
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Old   March 11, 2013, 18:53
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Quote:
Originally Posted by peter_t View Post
Here is my compilation log. seems to be some error with scotch?
Hello Peter,

It looks like you are using mpicc to compile ptscotch. You need to change this to openmpicc if you haven't done so already.

You may also want to try 2.2.0 that has just been released. gschaider has provided patches for this version in another post in a different thread. The title of the thread is something like patches for version 2.2.0 (or 2.2.x). You may still need to make the change to openmpicc in the Makefile.inc for scotch_6.0.0. Another change may come in the config folder (OpenFOAM-2.2.x/etc/config) for the settings.sh file (if you are using bash). Simply change mpicc to openmpicc if this hasn't been taken care of by the patches.

Good Luck,

Tom
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Old   March 11, 2013, 19:19
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Quote:
Originally Posted by tholsen View Post
Hello Peter,

It looks like you are using mpicc to compile ptscotch. You need to change this to openmpicc if you haven't done so already.

You may also want to try 2.2.0 that has just been released. gschaider has provided patches for this version in another post in a different thread. The title of the thread is something like patches for version 2.2.0 (or 2.2.x). You may still need to make the change to openmpicc in the Makefile.inc for scotch_6.0.0. Another change may come in the config folder (OpenFOAM-2.2.x/etc/config) for the settings.sh file (if you are using bash). Simply change mpicc to openmpicc if this hasn't been taken care of by the patches.

Good Luck,

Tom
The patches should fix both (Makefile.inc and settings.sh use openmpicc). In fact: if mpicc is NOT called openmpicc then you'll have to modify them
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Old   March 11, 2013, 22:28
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ah ok. cheers. so I'm running open mpi 1.6.4

thanks guys. I'll give it a whirl
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Old   March 13, 2013, 13:32
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ok so I tried installing 2.2 and still errors. here is my log
Attached Files
File Type: gz make.log.tar.gz (10.0 KB, 6 views)
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Old   March 13, 2013, 14:04
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Quote:
Originally Posted by peter_t View Post
ok so I tried installing 2.2 and still errors. here is my log
Rant: this is the 4th make.log.tar-something cluttering my Download-folder (would be more if I wouldn't remove that crap from time to time). That would be doable if the file was only zipped because then less could handle it (could anyone explain to me why anyone would want to tar a single file - yeah. If you want to preserve the rights and ownership. But apart from that). So if you must attach log files please:
- give them a unique name
- store them a sensible format (just gnuzipped for single file)
- post an excerpt of the part where you THINK that the error occurs. Maybe that makes looking at the log unnecessary

If the act of getting to the information takes me longer than it took you to post your question (and remember: that doesn't include the time it might take me to answer) then I don't feel were motivated in the first place (occasionaly I feel motivated to rant)
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Last edited by gschaider; March 13, 2013 at 14:05. Reason: y
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Old   March 13, 2013, 16:34
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Quote:
Originally Posted by peter_t View Post
ok so I tried installing 2.2 and still errors. here is my log
Hi Peter,

It looks like darwinIntel64Gcc46 may be a simple file instead of a link to darwinIntel64Gcc. So check out ~/OpenFOAM/OpenFOAM-2.2.0/wmake/rules/darwinIntel64Gcc46 to see if it is a plain file and not a symbolic link to ~/OpenFOAM/OpenFOAM-2.2.0/wmake/rules/darwinIntel64Gcc.

In case you don't know already, use ln -s "~/OpenFOAM/OpenFOAM-2.2.0/wmake/rules/darwinIntel64Gcc" "~/OpenFOAM/OpenFOAM-2.2.0/wmake/rules/darwinIntel64Gcc46" to form the symbolic link. Take the quotes out. They just help to point out the source directory and target directory. man ln will give you more information on the ln command.

Tom
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Old   March 13, 2013, 23:40
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Quote:
Originally Posted by gschaider View Post
Rant: this is the 4th make.log.tar-something cluttering my Download-folder (would be more if I wouldn't remove that crap from time to time). That would be doable if the file was only zipped because then less could handle it (could anyone explain to me why anyone would want to tar a single file - yeah. If you want to preserve the rights and ownership. But apart from that). So if you must attach log files please:
- give them a unique name
- store them a sensible format (just gnuzipped for single file)
- post an excerpt of the part where you THINK that the error occurs. Maybe that makes looking at the log unnecessary

If the act of getting to the information takes me longer than it took you to post your question (and remember: that doesn't include the time it might take me to answer) then I don't feel were motivated in the first place (occasionaly I feel motivated to rant)
sorry about that. I'm a bit new to this
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Old   March 14, 2013, 02:27
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Quote:
Originally Posted by tholsen View Post
Hi Peter,

It looks like darwinIntel64Gcc46 may be a simple file instead of a link to darwinIntel64Gcc. So check out ~/OpenFOAM/OpenFOAM-2.2.0/wmake/rules/darwinIntel64Gcc46 to see if it is a plain file and not a symbolic link to ~/OpenFOAM/OpenFOAM-2.2.0/wmake/rules/darwinIntel64Gcc.

In case you don't know already, use ln -s "~/OpenFOAM/OpenFOAM-2.2.0/wmake/rules/darwinIntel64Gcc" "~/OpenFOAM/OpenFOAM-2.2.0/wmake/rules/darwinIntel64Gcc46" to form the symbolic link. Take the quotes out. They just help to point out the source directory and target directory. man ln will give you more information on the ln command.

Tom
Thanks Tom. I tried doing what you suggested but it didn't work for some reason. So instead I simply changed the name of the folder "darwinIntel64Gcc" to "darwinIntel64Gcc46"(could this cause issues?). This time the compilation worked for a while but still failed in the end. Errors:


SloanRenumber.C:34:28: fatal error: boost/config.hpp: No such file or directory
compilation terminated.
make: *** [Make/darwinIntel64Gcc46DPOpt/SloanRenumber.o] Error 1


CGALPolyhedron/buildCGALPolyhedron.H:39:35: fatal error: CGAL/Simple_cartesian.h: No such file or directory
compilation terminated.
make[2]: *** [Make/darwinIntel64Gcc46DPOpt/surfaceFeatureExtract.o] Error 1
make[2]: Target `/Users/piotrtalikowski/OpenFOAM/OpenFOAM-2.2.0/platforms/darwinIntel64Gcc46DPOpt/bin/surfaceFeatureExtract' not remade because of errors.
make[1]: *** [surfaceFeatureExtract] Error 2


ERROR: ParaView not found in /Users/piotrtalikowski/OpenFOAM/ThirdParty-2.2.0/platforms/darwinIntel64Gcc46/paraview-3.12.0

here is my log
Attached Files
File Type: gz peter_t_log.tar.gz (84.6 KB, 0 views)
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Old   March 14, 2013, 03:40
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ok managed to make that symbolic link to darwinIntel64Gcc but still getting similar errors. all seems to start with boost/config.hpp
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Old   March 14, 2013, 07:16
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Quote:
Originally Posted by peter_t View Post
Thanks Tom. I tried doing what you suggested but it didn't work for some reason. So instead I simply changed the name of the folder "darwinIntel64Gcc" to "darwinIntel64Gcc46"(could this cause issues?). This time the compilation worked for a while but still failed in the end. Errors:


SloanRenumber.C:34:28: fatal error: boost/config.hpp: No such file or directory
compilation terminated.
make: *** [Make/darwinIntel64Gcc46DPOpt/SloanRenumber.o] Error 1


CGALPolyhedron/buildCGALPolyhedron.H:39:35: fatal error: CGAL/Simple_cartesian.h: No such file or directory
compilation terminated.
make[2]: *** [Make/darwinIntel64Gcc46DPOpt/surfaceFeatureExtract.o] Error 1
make[2]: Target `/Users/piotrtalikowski/OpenFOAM/OpenFOAM-2.2.0/platforms/darwinIntel64Gcc46DPOpt/bin/surfaceFeatureExtract' not remade because of errors.
make[1]: *** [surfaceFeatureExtract] Error 2


ERROR: ParaView not found in /Users/piotrtalikowski/OpenFOAM/ThirdParty-2.2.0/platforms/darwinIntel64Gcc46/paraview-3.12.0

here is my log
The boost-problem is on me. The patch assumes that the directory boost/CGAL is installed to /opt/local which is the general MacPorts-directory. The upstream scripts test for the directory that boost/CGAL is installed to (which is sensible, because they're in ThirdParty and unique) but for MacPorts this test is always OK. I'll extend the test to check for /opt/local/include/boost (that should take care of this). Short term solutions are:
- you can live without the surfaceFeatureExtract-utilitiy (a lot of people can)
- you install CGAL and boost with "port install boost cgal"

The paraview-thing puzzles me a bit, because the patch should discourage use of the ThirdParty-paraview (mainly because I can live with the built in reader of the distributed binaries). Will have a look. But the basic OF-utilities should work for you (try blockMesh/setFields/interFoam for the damBreak-case)
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Old   March 14, 2013, 07:17
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Quote:
Originally Posted by peter_t View Post
sorry about that. I'm a bit new to this
That's OK. Hope you didn't feel offended
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Old   March 16, 2013, 04:59
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thanks for your help guys. but decided to install openfoam via virtual box ubuntu
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Old   March 16, 2013, 08:03
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Originally Posted by peter_t View Post
thanks for your help guys. but decided to install openfoam via virtual box ubuntu
As you want. Although it was my impression that your installation was mostly functional (if those two errors you posted were the only ones)
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Old   April 20, 2013, 06:30
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Hello, I have the same problem with Paraview of the guy who posted above. Anyway I have to say that I didn't follow all the steps in the Wiki, because before the guide suggested here I found another tutorial and directly followed it. So, I just downloaded the material, installed the Pre-requisites and launched the compiling of OpenFoam without patching anything. Then I wanted to check if OpenFoam worked (I have to say that's my very first time in the Terminal) so I built a run directory copied the tutorial directory in it and did this:

Code:
cd $FOAM_RUN/tutorials/incompressible/icoFoam/cavity
blockMesh
icoFoam
In here everything worked fine (I guess) because no error message poped up, then I typed:

Code:
paraFoam
and the exactly same error of peter_t occurred:

Code:
FATAL ERROR: ParaView reader module libraries do not exist

Please build the reader module before continuing:
cd $FOAM_UTILITIES/postProcessing/graphics/PV3Readers
./Allwclean
./Allwmake
I followed the advise given by the message but after typing ./Allwmake this happened:
Code:
ERROR: ParaView not found in /Users/piMac/OpenFOAM/ThirdParty-2.2.0/platforms/darwinIntel64Gcc/paraview-3.12.0
So, is it the best way to download Paraview from the website you linked and copy the files in my application folder?

I also want to tell you that when I downloaded the OpenFOAM-v2.2.sparseimage a disk automatically mounted on my desktop, I didn't create a disk image, and I'm wondering if I have to keep this there forever to use OpenFoam or I can copy the OpenFoam directory in my application directory to use openFoam.

Many Thanks in advance.
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Old   April 20, 2013, 11:57
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Quote:
Originally Posted by maCrobo View Post
Hello, I have the same problem with Paraview of the guy who posted above. Anyway I have to say that I didn't follow all the steps in the Wiki, because before the guide suggested here I found another tutorial and directly followed it. So, I just downloaded the material, installed the Pre-requisites and launched the compiling of OpenFoam without patching anything. Then I wanted to check if OpenFoam worked (I have to say that's my very first time in the Terminal) so I built a run directory copied the tutorial directory in it and did this:
"As the guy who posted above": this thread is quite long. It would help anyone tremendously if you use the permalink to the posting (top right corner with #nr). Also I'm not sure what the guide and the tutorial you'r referring to are (it's a long thread and I'm not going through it, sorry)

Quote:
Originally Posted by maCrobo View Post
Code:
cd $FOAM_RUN/tutorials/incompressible/icoFoam/cavity
blockMesh
icoFoam
In here everything worked fine (I guess) because no error message poped up, then I typed:

Code:
paraFoam
and the exactly same error of peter_t occurred:

Code:
FATAL ERROR: ParaView reader module libraries do not exist

Please build the reader module before continuing:
cd $FOAM_UTILITIES/postProcessing/graphics/PV3Readers
./Allwclean
./Allwmake
I followed the advise given by the message but after typing ./Allwmake this happened:
Code:
ERROR: ParaView not found in /Users/piMac/OpenFOAM/ThirdParty-2.2.0/platforms/darwinIntel64Gcc/paraview-3.12.0
So, is it the best way to download Paraview from the website you linked and copy the files in my application folder?

I also want to tell you that when I downloaded the OpenFOAM-v2.2.sparseimage a disk automatically mounted on my desktop, I didn't create a disk image, and I'm wondering if I have to keep this there forever to use OpenFoam or I can copy the OpenFoam directory in my application directory to use openFoam.

Many Thanks in advance.
Did you compile paraview? Because if you didn't, then the PV3Readers won't compile. As I'm quite content with the OpenFOAM-Reader that comes with paraview (the one you can access with "paraFoam -builtin") I didn't bother to compile paraview for a long time. Which doesn't mean that it doesn't work. Maybe even without having to patch anything
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Old   April 20, 2013, 14:34
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@maCrobo: Quick answer: http://openfoamwiki.net/index.php/Ho...using_ParaView

And as Bernhard said, don't expect us to guess which instructions you've been following
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Old   May 9, 2013, 12:15
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Hello,

OF 2.0 was working quiet well on my lion. I recently upgraded my MAC to mountain Lion and wanted to have OF 2.2 on it. I did all the steps just fine but at the end I got some errors(which I don't have any clue) and OF is not working. I attached the make log file, maybe somebody can help. I really appreciate.

best regards
Attached Files
File Type: gz make_20130509_daryoush.log.gz (1.5 KB, 2 views)
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Old   May 9, 2013, 14:00
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Quote:
Originally Posted by MohandeseIrani View Post
Hello,

OF 2.0 was working quiet well on my lion. I recently upgraded my MAC to mountain Lion and wanted to have OF 2.2 on it. I did all the steps just fine but at the end I got some errors(which I don't have any clue) and OF is not working. I attached the make log file, maybe somebody can help. I really appreciate.

best regards
The file you posted is a tar with wmake/rules/darwinIntel64Gcc. Are you sure this is the file you wanted to post?
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