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OF 1.9 (aka OF 2.1) on Mac OS X

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Old   May 9, 2013, 19:21
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  #281
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Quote:
Originally Posted by gschaider View Post
The file you posted is a tar with wmake/rules/darwinIntel64Gcc. Are you sure this is the file you wanted to post?
thank you bernhard for your reply,
I wanted to send the log file. this one is correct, will you take a look?
thanks

regards
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Old   May 11, 2013, 06:10
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Quote:
Originally Posted by MohandeseIrani View Post
thank you bernhard for your reply,
I wanted to send the log file. this one is correct, will you take a look?
thanks

regards
The problem is straight in the beginning and all through the log:

Code:
Makefile:54: /Users/kiarashkashi/OpenFOAM/OpenFOAM-2.2.0/wmake/rules/darwinIntel64/general: No such file or directory
Makefile:55: /Users/kiarashkashi/OpenFOAM/OpenFOAM-2.2.0/wmake/rules/darwinIntel64/c++: No such file or directory
It should look for the files in darwinIntel64Gcc (BTW: could you verify that this directory is present in wmake/rules?). The Gcc (or Gcc45 or similar) comes from the environment variable WM_COMPILER. Is that set and if yes to which value (if unset it should be set automatically by etc/bashrc)?
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Old   May 11, 2013, 17:14
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Quote:
Originally Posted by gschaider View Post
The problem is straight in the beginning and all through the log:

Code:
Makefile:54: /Users/kiarashkashi/OpenFOAM/OpenFOAM-2.2.0/wmake/rules/darwinIntel64/general: No such file or directory
Makefile:55: /Users/kiarashkashi/OpenFOAM/OpenFOAM-2.2.0/wmake/rules/darwinIntel64/c++: No such file or directory
It should look for the files in darwinIntel64Gcc (BTW: could you verify that this directory is present in wmake/rules?). The Gcc (or Gcc45 or similar) comes from the environment variable WM_COMPILER. Is that set and if yes to which value (if unset it should be set automatically by etc/bashrc)?
Thank you Bernhard for your reply. I got over the problem with your tip. now I'm dealing with a new problem. I solved a case and wanted to run paraFoam, but I got the following fault:

FATAL ERROR: ParaView reader module libraries do not exist

Please build the reader module before continuing:
cd $FOAM_UTILITIES/postProcessing/graphics/PV3Readers
./Allwclean
./Allwmake

I went to the mentioned directory and somehow I had to change the location of paraview to /Thirdparty-2.2.0/platforms/darwinIntel64/paraview-3.12.0 , because otherwise it couldn't find it. it's again problem of compiling I think. I attached the log file here after running ./Allwmake. will you please take a look at it. thank you

best regards
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Old   May 12, 2013, 05:55
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Greetings to all!

@MohandeseIrani: I think you didn't read the whole wiki page Have a look at the section "Installing and using ParaView ": http://openfoamwiki.net/index.php/Ho...using_ParaView

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Old   June 1, 2013, 14:39
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Hi everyone,

thanks a lot for this very helpful thread and the openfoamwiki page. Because of you guys, I just successfully installed OpenFOAM 2.1.1 on my Snow Leopard. I'm very happy.

Two remarks:
1. In the great wiki-tutorial (http://www.openfoamwiki.net/index.ph...enFOAM_v21_Mac), it is missing that one should apply the Third-Party patch:
Code:
 patch -p1 <ThirdParty-2.1.0-Mac.patch
It would be helpful to add this part.

At first, I forgot to apply this patch and I guess that was the reason why I encountered some similar problems as HJG with turbulance/R/make/options. I got the same error:
Quote:
Originally Posted by wyldckat View Post
Code:
Undefined symbols for architecture x86_64:
  "Foam::incompressible::turbulenceModel::typeName", referenced from:
      Foam::calc(Foam::argList const&, Foam::Time const&, Foam::fvMesh const&) in R.o
ld: symbol(s) not found for architecture x86_64
collect2: ld returned 1 exit status
make[3]: *** [/Users/heinzjuergengeurtz/OpenFOAM/OpenFOAM-2.1.x/platforms/darwinIntel64Gcc46DPOpt/bin/R] Error 1
make[2]: *** [R] Error 2
and when trying
Quote:
Originally Posted by wyldckat View Post
Code:
foam
cd applications/utilities/postProcessing/turbulence/R/
wclean
wmake
wmake all
it resulted in
Quote:
Originally Posted by hjg View Post
Code:
Undefined symbols for architecture x86_64:
  "Foam::incompressible::turbulenceModel::typeNa  me", referenced from:
      Foam::calc(Foam::argList const&, Foam::Time const&, Foam::fvMesh const&) in R.o
ld: symbol(s) not found for architecture x86_64
collect2: ld returned 1 exit status
make: *** [/Users/heinzjuergengeurtz/OpenFOAM/OpenFOAM-2.1.x/platforms/darwinIntel64Gcc46DPOpt/bin/R] Error 1
But after applying the fix:
Quote:
Originally Posted by wyldckat View Post
Edit the file "applications/utilities/postProcessing/turbulence/R/Make/options". You should see these last lines:
Code:
    -lfiniteVolume \
    -lgenericPatchFields
Replace the last line and add another like this:
Code:
    -lfiniteVolume \
    -lgenericPatchFields \
    -lincompressibleTurbulenceModel
Note: Be careful to not leave any spaces on the right of the backslash "\".
Then follow those two command blocks I wrote before.
and running
Code:
./Allwmake
wcleanAll
wcleanLnIncludeAll
./Allwmake
all error messages were gone.

2. So, as a second remark, it would be great if this and similar fixes (e.g. with regard to multiphaseEulerFoam) could be added to the tutorial for less experienced users like me.

Many thanks again,
Steffen
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Old   June 1, 2013, 18:22
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Hi again,

I have exactly the same problem as maCrombo (#276) and MohandeseIrani (#283) with paraFoam:
Code:
FATAL ERROR: ParaView reader module libraries do not exist
Please build the reader module before continuing:
cd $FOAM_UTILITIES/postProcessing/graphics/PV3Readers
./Allwclean
./Allwmake
I closely followed the instructions on http://openfoamwiki.net/index.php/Ho...enFOAM_v21_Mac (including the section on ParaView, the "parax" command works!) and applied the 3 patches of gschaider (#1).
Could it be possible that Paraview has to be compiled first? Can anyone tell me how to do this on a Mac? When trying
Code:
 cd OpenFOAM/ThirdParty-2.1.1
./makeParaView
it returns
Code:
 *** Error: cannot find qmake either at $QMAKE_PATH or in current $PATH
It would be great if anyone could give me a hint.
Thanks
Steffen

Last edited by Stev-o; June 2, 2013 at 09:37.
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Old   June 4, 2013, 12:49
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Quote:
Originally Posted by Stev-o View Post
Hi everyone,

thanks a lot for this very helpful thread and the openfoamwiki page. Because of you guys, I just successfully installed OpenFOAM 2.1.1 on my Snow Leopard. I'm very happy.

Two remarks:
1. In the great wiki-tutorial (http://www.openfoamwiki.net/index.ph...enFOAM_v21_Mac), it is missing that one should apply the Third-Party patch:
Code:
 patch -p1 <ThirdParty-2.1.0-Mac.patch
It would be helpful to add this part.
Thanks for noticing and diagnosing the problem. The spirtit of the Wiki is: you find a mistake, you fix it. Especially in this case where you (as the last person who did it) probably have the best understanding of what is missing.

Quote:
Originally Posted by Stev-o View Post
2. So, as a second remark, it would be great if this and similar fixes (e.g. with regard to multiphaseEulerFoam) could be added to the tutorial for less experienced users like me.

Many thanks again,
Steffen
Which version of the patch are you using? Usually I update the patch over time and post the subsequent versions in the same thread as the original patch for that OF-version. Problem is that I usually use the .x-version of OF (from git) and not the "regular" releases so it might not always be clear which of those works with intermediate versions like 2.1.1
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Old   June 4, 2013, 12:56
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Quote:
Originally Posted by Stev-o View Post
Hi again,

I have exactly the same problem as maCrombo (#276) and MohandeseIrani (#283) with paraFoam:
Code:
FATAL ERROR: ParaView reader module libraries do not exist
Please build the reader module before continuing:
cd $FOAM_UTILITIES/postProcessing/graphics/PV3Readers
./Allwclean
./Allwmake
I closely followed the instructions on http://openfoamwiki.net/index.php/Ho...enFOAM_v21_Mac (including the section on ParaView, the "parax" command works!) and applied the 3 patches of gschaider (#1).
Could it be possible that Paraview has to be compiled first? Can anyone tell me how to do this on a Mac? When trying
Code:
 cd OpenFOAM/ThirdParty-2.1.1
./makeParaView
it returns
Code:
 *** Error: cannot find qmake either at $QMAKE_PATH or in current $PATH
It would be great if anyone could give me a hint.
Thanks
Steffen
The PV3Readers-reader is not supported by my patches (I explained the reasons elsewhere a number of times. Bottom line: don't have the time). I use the Paraview binary by kitware with the built-in reader. Just create in the case a stub-file with "touch casename.foam" and open that. Or if you have the paraview executable in your path (the 2.2-patch sets this up automatically) use "paraFoam -builtin"
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Old   June 7, 2013, 13:03
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Ok, thanks for your responses:

1. I updated the wiki page. I just wasn't sure whether some completely ignorant user like me should mess around with it.

2. I'm actually using the very first versions of your patches (from post # 1). I will have a look if I can find more recent ones in this thread. Thanks.

3. Thanks as well for the information on the PV3-Reader (sorry that I haven't seen it elsewhere). I'm actually already doing it like you said: I just create a stub-file which I can open. Maybe with a more recent patch I might also be able to use the command "paraFoam -builtin" which right now gives me the error message above.

Best
Steffen
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Old   June 8, 2013, 10:58
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Quote:
Originally Posted by Stev-o View Post
Ok, thanks for your responses:

1. I updated the wiki page. I just wasn't sure whether some completely ignorant user like me should mess around with it.
No one using OpenFOAM is ignorant (it's a bit like the Fight Club except that you're allowed to talk about it)

Quote:
Originally Posted by Stev-o View Post
2. I'm actually using the very first versions of your patches (from post # 1). I will have a look if I can find more recent ones in this thread. Thanks.
Should be one from January

Quote:
Originally Posted by Stev-o View Post
3. Thanks as well for the information on the PV3-Reader (sorry that I haven't seen it elsewhere). I'm actually already doing it like you said: I just create a stub-file which I can open. Maybe with a more recent patch I might also be able to use the command "paraFoam -builtin" which right now gives me the error message above.
Basically the binary inside the Paraview.app has to be called. Setting the PATH-variable to it is no good. I'm afraid the 2.1.x-patch doesn't set that (only the 2.2 does)
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Old   June 17, 2013, 20:49
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Hi!

First of all, let me thank you for taking care of this blog and for helping others to install OpenFOAM. The jobs you are doing is really admirable!

I have spent the last two days on trying to install OpenFOAM on my MBA 13". Unsuccessfully. I have followed step-by-step the tutorial http://openfoamwiki.net/index.php/Ho...enFOAM_v21_Mac but in the building process something always goes wrong. I get a quite massive bunch of error for which it is rather difficult for me to understand the source of the problem (I have taken a look at the first error I get but with no clue). As suggested in some of these posts, I have changed the make files of "multiphaseEulerFoam" and "turbulence/R" but with no luck. I have also tried with both OpenFOAM-2.1.0 and OpenFOAM-2.1.1, and for each I have tried the several patches which has been release over the past year and a half (the last patch released the 25th of January does not seem to work on my laptop tough).

My MBA mounts a OSx Lion 10.7.5. I have OPENMPI 1.6.1 already installed and I switch between the one coming from the third-party and the one I have by means of the WM_MPLIB flag.

The log file is rather big, probably because of the massive amounts of error. Anyway, I attach the first part of the make.log file in the hope that you guys can identify a little where the problem may be. If you need anything else, do not hesitate to get back to me!

Best,

Enrico
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Old   June 18, 2013, 12:11
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Quote:
Originally Posted by deusebio View Post
Hi!

First of all, let me thank you for taking care of this blog and for helping others to install OpenFOAM. The jobs you are doing is really admirable!

I have spent the last two days on trying to install OpenFOAM on my MBA 13". Unsuccessfully. I have followed step-by-step the tutorial http://openfoamwiki.net/index.php/Ho...enFOAM_v21_Mac but in the building process something always goes wrong. I get a quite massive bunch of error for which it is rather difficult for me to understand the source of the problem (I have taken a look at the first error I get but with no clue). As suggested in some of these posts, I have changed the make files of "multiphaseEulerFoam" and "turbulence/R" but with no luck. I have also tried with both OpenFOAM-2.1.0 and OpenFOAM-2.1.1, and for each I have tried the several patches which has been release over the past year and a half (the last patch released the 25th of January does not seem to work on my laptop tough).

My MBA mounts a OSx Lion 10.7.5. I have OPENMPI 1.6.1 already installed and I switch between the one coming from the third-party and the one I have by means of the WM_MPLIB flag.

The log file is rather big, probably because of the massive amounts of error. Anyway, I attach the first part of the make.log file in the hope that you guys can identify a little where the problem may be. If you need anything else, do not hesitate to get back to me!

Best,

Enrico
That looks strange
Code:
/opt/local/include/gcc46/c++/cwchar:66:11: error: '::mbstate_t' has not been declared
/opt/local/include/gcc46/c++/cwchar:141:11: error: '::wint_t' has not been declared
Seems like your compiler installation is broken. Have you tried whether you can compile a simple HelloWorld-C++-file?
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Old   June 18, 2013, 13:22
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First of all, thanks for the reply!

Quote:
Originally Posted by gschaider View Post
That looks strange
Code:
/opt/local/include/gcc46/c++/cwchar:66:11: error: '::mbstate_t' has not been declared
/opt/local/include/gcc46/c++/cwchar:141:11: error: '::wint_t' has not been declared
Seems like your compiler installation is broken. Have you tried whether you can compile a simple HelloWorld-C++-file?
I tried to compile a "hello world.cpp" program and it worked! I do not have too much experience with c++. Since I rather come from the Fortran community, I have not tested extensively with my work whether the c++ complier I have is broken.

It then seems to be a problem similar to the one reported here 2.0.x on Mac OSX . Do you know whether "bambedil" found a solution? There is none in the thread...

Enrico
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Old   June 20, 2013, 19:50
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Quote:
Originally Posted by deusebio View Post
First of all, thanks for the reply!



I tried to compile a "hello world.cpp" program and it worked! I do not have too much experience with c++. Since I rather come from the Fortran community, I have not tested extensively with my work whether the c++ complier I have is broken.
You used the SAME compiler that is mentioned in the log (==used by OpenFOAM)? That is strange

Quote:
Originally Posted by deusebio View Post
It then seems to be a problem similar to the one reported here 2.0.x on Mac OSX . Do you know whether "bambedil" found a solution? There is none in the thread...

Enrico
Am still travelling and have neither time nor motivation to look through the whole thread. Please use the permalink (the #42 in the upper right corner of each post) to refer to a SPECIFIC post)
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Old   August 12, 2013, 10:39
Default Last Error _yPlusLES
  #295
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Hello,

I am not familiar with the forum, although I have immersed myself in this thread from one weak ago to try to compile OpenFOAM-V2.1.1 on my Mac (OSX 10.6.8). I have to greet every body for the collective effort.
I have conscientiously examine all the posts, and applied some corrections. Now I block on the last and unique error remaining in the Allwmake
step :
2.1.1/platforms/darwinIntel64Gcc46DPOpt/bin/yPlusLES
Undefined symbols for architecture x86_64:
"Foam::incompressible::turbulenceModel::typeNa me", referenced from:
_main in yPlusLES.o
ld: symbol(s) not found for architecture x86_64
collect2: ld returned 1 exit status
make[3]: *** [/Users/vg/OpenFOAM/OpenFOAM-2.1.1/platforms/darwinIntel64Gcc46DPOpt/bin/yPlusLES] Error 1
make[2]: *** [yPlusLES] Error 2
make[3]: `/Users/vg/OpenFOAM/OpenFOAM-2.1.1/platforms/darwinIntel64Gcc46DPOpt/bin/yPlusRAS' is up to date.
make[2]: Target `application' not remade because of errors.
make[1]: *** [wall] Error 2
make[1]: Target `application' not remade because of errors.
make: *** [postProcessing] Error 2

Could you help me please ?
Best regards,
VG
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Old   August 12, 2013, 12:34
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Quote:
Originally Posted by NewVGh01 View Post
Hello,

I am not familiar with the forum, although I have immersed myself in this thread from one weak ago to try to compile OpenFOAM-V2.1.1 on my Mac (OSX 10.6.8). I have to greet every body for the collective effort.
I have conscientiously examine all the posts, and applied some corrections. Now I block on the last and unique error remaining in the Allwmake
step :
2.1.1/platforms/darwinIntel64Gcc46DPOpt/bin/yPlusLES
Undefined symbols for architecture x86_64:
"Foam::incompressible::turbulenceModel::typeNa me", referenced from:
_main in yPlusLES.o
ld: symbol(s) not found for architecture x86_64
collect2: ld returned 1 exit status
make[3]: *** [/Users/vg/OpenFOAM/OpenFOAM-2.1.1/platforms/darwinIntel64Gcc46DPOpt/bin/yPlusLES] Error 1
make[2]: *** [yPlusLES] Error 2
make[3]: `/Users/vg/OpenFOAM/OpenFOAM-2.1.1/platforms/darwinIntel64Gcc46DPOpt/bin/yPlusRAS' is up to date.
make[2]: Target `application' not remade because of errors.
make[1]: *** [wall] Error 2
make[1]: Target `application' not remade because of errors.
make: *** [postProcessing] Error 2

Could you help me please ?
Best regards,
VG
Have a look at Make/options of that utility and whether
Code:
    -lincompressibleTransportModels \
is in the EXE_LIBS. The linker on Mac OS X needs that (other platforms don't)
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Old   August 13, 2013, 07:23
Default no more
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Good Morning,

In the Make/Options of yPlusLes utility :
path : /Applications/utilities/Postprocessing/wall/yPlusLes/
the “ –lincompressibletransportModels “ line was present :
EXE_INC = \
-I$(LIB_SRC)/meshTools/lnInclude \
-I$(LIB_SRC)/turbulenceModels \
-I$(LIB_SRC)/turbulenceModels/incompressible/LES/LESModel \
-I$(LIB_SRC)/turbulenceModels/LES/LESdeltas/lnInclude \
-I$(LIB_SRC)/transportModels \
-I$(LIB_SRC)/finiteVolume/lnInclude

EXE_LIBS = \
-lincompressibleLESModels \
-lincompressibleTurbulenceModel \
-lincompressibleTransportModels \
-lfiniteVolume \
-lgenericPatchFields

I have only cleaned it and rewrite. Now There is no more error. I’ ll work now to progress on OF.
I thank you.
Best regards,
VG
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Old   August 19, 2013, 07:40
Default How to launch ParaView
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Good morning,

After resolution of problems for OF-2.1.1 installation on my Mac OSX 10.6.8, I am now sticked at the stage of paraview use to extract results.
I read all the previous posts on the subject: #217,218 ,219, 277,288, 290, and I have to say that I don’t know what to do. I have installed OF-2.1.1 , using ThirdParty-2.1.0.patch, and I don’t understand how to launch Paraview (present in the ThirdParty package) using paraFoam. Can somebody resume simply but clearly (for the non-specialist that I am) the necessary stages ?
Kind regards
VG
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Old   August 19, 2013, 10:23
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Greetings to all!

@NewVGh01:
Quote:
Originally Posted by NewVGh01 View Post
Can somebody resume simply but clearly (for the non-specialist that I am) the necessary stages ?
Have you seen this the chapter "Installing and using ParaView" on the respective page on the wiki? Namely this one: http://openfoamwiki.net/index.php/Ho...using_ParaView

If there is something you don't understand there, please let us know.

Best regards,
Bruno
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Old   August 19, 2013, 11:25
Default paraview
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re- Good morning Bruno,

Yes I have seen the wiki-page. From the posted messages, i thought that I had to use the configuration with the stub-file created with touch. The execution of the “ . paraFoam –builtin command” creates the error :
FATAL ERROR: ParaView reader module libraries do not exist
Please build the reader module before continuing:
cd $FOAM_UTILITIES/postProcessing/graphics/PV3Readers
./Allwclean
./Allwmake

I don’t install paraview from www.paraview.org but try to use the version 3.12.0 present in ThirdParty. I should have missed a stage in the installation because I don’t find any file named only « paraview » in the ThirdParty-2.1.1.
?
VG
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