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Incomplete installation of OpenFOAM 2.1.1 on ubuntu 12.10

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Old   February 27, 2013, 03:20
Default Incomplete installation of OpenFOAM 2.1.1 on ubuntu 12.10
  #1
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Hello
To install I followed the instructions 2.4 Ubuntu 12.10
http://openfoamwiki.net/index.php/In...u#Ubuntu_12.10
by following the detailed step-by-step instructions below...
Steps:
  1. Switch to root mode (administrator) and install the necessary packages (run one line at a time):
… all the way down
I got a file OpenFOAM and within that
file OpenFOAM-2.1.1 (not the file ThirdParty-2.1.1) and
OpenFOAM-2.1.1.tgz
ThirdParty-2.1.1.tgz
icoFoam –help Does not give anything
gedit ~/.bashrc doesn’t contain line OpenFOAM
Question:Do I have to uninstall and start from the beginning?
Thanks
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Old   February 27, 2013, 04:52
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Greetings zania and welcome to the forum!

Inside the folder "$HOME/OpenFOAM/OpenFOAM-2.1.1", do you have a file named "make.log"? If you do, follow the instructions that were given on the instructions, namely:
Code:
#Create a tarball in case you've seen any errors (it's the first error that matters)
#or if you don't understand the output
#and attach the file "make.log.tar.gz" to a post in the designated thread

tar -czf make.log.tar.gz make.log
edit: A follow-up question: what did you exactly do in step #3?

Best regards,
Bruno

Last edited by wyldckat; February 27, 2013 at 04:54. Reason: see "edit:"
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Old   February 27, 2013, 05:21
Default More information on Incomplete installation of OpenFOAM 2.1.1
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Hello Bruno
Thanks for your welcome and the quick response!
Inside the folder “OpenFOAM/OpenFOAM-2.1.1”, I do not have a file named "make.log"?

To your follow-up question: what did you exactly do in step #3? I copied
For i386:
#here you can change 4 to the number of cores you've gotsource $HOME/OpenFOAM/OpenFOAM-2.1.1/etc/bashrc WM_NCOMPPROCS=4 WM_MPLIB=SYSTEMOPENMPI WM_ARCH_OPTION=32 echo "source $HOME/OpenFOAM/OpenFOAM-2.1.1/etc/bashrc $FOAM_SETTINGS" >> $HOME/.bashrc
All the Best
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Old   February 27, 2013, 09:54
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Hi zania,

OK, then check the following details:
  1. What does this output:
    Code:
    echo $HOME
    ls -l $HOME
    It should tell you where your home folder is and also list the contents of your home folder.
  2. What does this output:
    Code:
    ls -l $HOME/OpenFOAM
    It should show you the contents of the OpenFOAM folder, which should be 2 "*.tgz" files and 2 folders for "OpenFOAM-2.1.1" and "ThirdParty-2.1.1".
  3. And what does this output:
    Code:
    ls -l $HOME/OpenFOAM/OpenFOAM-2.1.1
    It should show you a file list similar to this one: https://github.com/OpenFOAM/OpenFOAM-2.1.x
If either one of these do not correspond to the description I made, then let us know!

Best regards,
Bruno
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Old   February 27, 2013, 13:32
Default Trying your instructions
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Hello Bruno Thank you for your patience!
Trying your instructions:
  1. What does this output:
Code:
echo $HOMEls -l $HOME
It should tell you where your home folder is and also list the contents of your home folder.
eva@eva-Inspiron-1525:~$ echo $HOME
/home/eva
eva@eva-Inspiron-1525:~$ ls -l $HOME
σύνολο 56
drwxr-xr-x 3 root root 4096 Φεβ 20 20:10 OpenFOAM
-rw-r--r-- 1 eva eva 8445 Φεβ 9 22:41 examples.desktop
drwxrwxr-x 2 eva eva 4096 Φεβ 26 20:33 Ubuntu One
drwxrwxr-x 2 eva eva 4096 Φεβ 26 20:51 user
drwxr-xr-x 2 eva eva 4096 Φεβ 9 22:49 Βίντεο
drwxr-xr-x 2 eva eva 4096 Φεβ 9 22:49 Δημόσια
drwxr-xr-x 2 eva eva 4096 Φεβ 9 22:49 Έγγραφα
drwxr-xr-x 2 eva eva 4096 Φεβ 9 22:49 Εικόνες
drwxr-xr-x 2 eva eva 4096 Φεβ 9 22:49 Επιφάνεια εργασίας
drwxr-xr-x 2 eva eva 4096 Φεβ 9 22:49 Λήψεις
drwxr-xr-x 2 eva eva 4096 Φεβ 9 22:49 Μουσική
drwxr-xr-x 2 eva eva 4096 Φεβ 9 22:49 Πρότυπα

  1. What does this output:
Code:
ls -l $HOME/OpenFOAM
It should show you the contents of the OpenFOAM folder, which should be 2 "*.tgz" files and 2 folders for "OpenFOAM-2.1.1" and "ThirdParty-2.1.1".
ls: αδυναμία πρόσβασης του (Its in Greek: inability to access) /home/eva/OpenFOAM: Δεν υπάρχει τέτοιο αρχείο ή κατάλογος (there is not such file)
And what does this output:
Code:
ls -l $HOME/OpenFOAM/OpenFOAM-2.1.1
eva@eva-Inspiron-1525:~$ ls -l $HOME/OpenFOAM/OpenFOAM-2.1.1
ls: αδυναμία πρόσβασης του /home/eva/OpenFOAM/OpenFOAM-2.1.1: Δεν υπάρχει τέτοιο αρχείο ή κατάλογος
eva@eva-Inspiron-1525:~$
It should show you a file list similar to this one: https://github.com/OpenFOAM/OpenFOAM-2.1.x

After the installation a file OpenFOAM was created @ user eva that contains
eva@eva-Inspiron-1525:~$ cd OpenFOAM
eva@eva-Inspiron-1525:~/OpenFOAM$ ls
OpenFOAM-2.1.1 OpenFOAM-2.1.1.tgz ThirdParty-2.1.1.tgz
not the file ThirdParty-2.1.1
eva@eva-Inspiron-1525:~/OpenFOAM$ cd OpenFOAM-2.1.1
eva@eva-Inspiron-1525:~/OpenFOAM/OpenFOAM-2.1.1$ ls
Allwmake bin doc README.html src wmake
applications COPYING etc README.org tutorials
eva@eva-Inspiron-1525:~/OpenFOAM/OpenFOAM-2.1.1$
Best regards
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Old   February 27, 2013, 13:53
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Hi zania,

Looks like you forgot to run the exit command at the end of the step #1. This lead to having the "OpenFOAM" folder set to root permissions:
Quote:
Code:
drwxr-xr-x 3 root root 4096 Φεβ  20 20:10 OpenFOAM
You can restore permissions to this folder by running:
Code:
sudo chown -R eva:eva /home/eva/OpenFOAM
To play it safe, I suggest that you start a new terminal window and fix the missing part of step #2:
Code:
cd ~
cd OpenFOAM
tar xzf ThirdParty-2.1.1.tgz
If after this the folder "ThirdParty-2.1.1" doesn't exist, then the file "ThirdParty-2.1.1.tgz" might be broken...


Afterwards, continue from step #3. And keep in mind that you only need root permissions for the very first step! After that, you do not need root permissions!

Best regards,
Bruno
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Old   February 27, 2013, 16:00
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Hi Bruno,
I am sorry to come back.
"ThirdParty-2.1.1" now exists.
But continuing from step #3 I got:
eva@eva-Inspiron-1525:~$ uname -m
i686
eva@eva-Inspiron-1525:~$ source $HOME/OpenFOAM/OpenFOAM-2.1.1/etc/bashrc WM_NCOMPPROCS=4 WM_MPLIB=SYSTEMOPENMPI WM_ARCH_OPTION=32
Το πρόγραμμα The programe 'mpicc' can be bound μπορεί να βρεθεί στα παρακάτω πακέτα in the:
* lam4-dev
* libmpich-mpd1.0-dev
* libmpich-shmem1.0-dev
* libmpich1.0-dev
* libmpich2-dev
* libopenmpi-dev
* libopenmpi1.6-dev
Try Δοκιμάστε: sudo apt-get install <sellected package επιλεγμένο πακέτο>
Το πρόγραμμα 'mpicc' μπορεί να βρεθεί στα παρακάτω πακέτα:
* lam4-dev
* libmpich-mpd1.0-dev
* libmpich-shmem1.0-dev
* libmpich1.0-dev
* libmpich2-dev
* libopenmpi-dev
* libopenmpi1.6-dev
Try Δοκιμάστε: sudo apt-get install <επιλεγμένο πακέτο>
eva@eva-Inspiron-1525:~$
eva@eva-Inspiron-1525:~$ echo "source $HOME/OpenFOAM/OpenFOAM-2.1.1/etc/bashrc $FOAM_SETTINGS" >> $HOME/.bashrc


What did I do wrong?


Thank you
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Old   February 27, 2013, 18:06
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Hi zania,

I think I now understand what happened. The instructions on step #1 have (had) the following code at the very beginning:
Code:
sudo -s
#or
su -
The idea was to execute only one of these two commands, not both. I'll take care of making these instructions clearer...


Anyway, try running the following, one line at a time:
Code:
sudo -s
 
apt-get install build-essential cmake flex bison zlib1g-dev qt4-dev-tools libqt4-dev gnuplot libreadline-dev libncurses-dev libxt-dev libopenmpi-dev openmpi-bin
 
exit
Then start a new terminal. There shouldn't be any error messages. Then:
  1. Go into OpenFOAM's main folder:
    Code:
    cd ~/OpenFOAM
  2. Follow the instructions starting from step #4.

Best regards,
Bruno
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Old   February 28, 2013, 07:48
Default I know I take too much of your time.
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Hi Bruno,
I know I take too much of your time. Could you please check if its ok to carry to step 4.
eva@eva-Inspiron-1525:~$ sudo -s
[sudo] password for eva:
root@eva-Inspiron-1525:~# apt-get install build-essential cmake flex bison zlib1g-dev qt4-dev-tools libqt4-dev gnuplot libreadline-dev libncurses-dev libxt-dev libopenmpi-dev openmpi-
Ανάγνωση Λιστών Πακέτων... Ολοκληρώθηκε reading completed
Κατασκευή Δένδρου Εξαρτήσεων constructing dependence tree
Ανάγνωση περιγραφής της τρέχουσας κατάσταση... Ολοκληρώθηκε reading current state
(Σημείωση, επιλέχθηκε το libncurses5-dev αντί του libncurses-dev)
Notice it was chosen libncurses5-dev instead of libncurses-dev
(E: It was not located Αδυναμία εντοπισμού του πακέτου openmpi)
E: It was not located openmpi

root@eva-Inspiron-1525:~#

root@eva-Inspiron-1525:~# exit
exit
eva@eva-Inspiron-1525:~$
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Old   February 28, 2013, 09:22
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Hi zania,

You forgot to add "bin" to the end of the apt-get line. Try this:
Code:
sudo apt-get install openmpi-bin
Best regards,
Bruno
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Old   March 1, 2013, 06:05
Default Can I redo step #4?
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Ηello Bruno
eva@eva-Inspiron-1525:~$ cd ~/OpenFOAM
eva@eva-Inspiron-1525:~/OpenFOAM$ cd OpenFOAM-2.1.1
eva@eva-Inspiron-1525:~/OpenFOAM/OpenFOAM-2.1.1$ ./Allwmake > make.log 2>&1
eva@eva-Inspiron-1525:~/OpenFOAM/OpenFOAM-2.1.1$
eva@eva-Inspiron-1525:~/OpenFOAM/OpenFOAM-2.1.1$ ./Allwmake > make.log 2>&1
eva@eva-Inspiron-1525:~/OpenFOAM/OpenFOAM-2.1.1$ icoFoam -help
icoFoam: η εντολή δε βρέθηκε
gedit make.log
./Allwmake: 4: ./Allwmake: wmakeCheckPwd: not found
Error: Current directory is not $WM_PROJECT_DIR
The environment variables are inconsistent with the installation.
Check the OpenFOAM entries in your dot-files and source them.

Can I open a new terminal and
Code:
cd ~/OpenFOAM
and
Follow the instructions starting from step #4.

I know your instructions are right. I just don’t follow them correctly.
All the best
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Old   March 2, 2013, 06:09
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Hi zania,

Run:
Code:
source $HOME/OpenFOAM/OpenFOAM-2.1.1/etc/bashrc WM_NCOMPPROCS=4 WM_MPLIB=SYSTEMOPENMPI WM_ARCH_OPTION=32
And try step #4 once again.

Best regards,
Bruno
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Old   March 4, 2013, 17:00
Default What should I choose in <selected package>
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Hello Bruno I think I need more help

I got :
eva@eva-Inspiron-1525:~$ source $HOME/OpenFOAM/OpenFOAM-2.1.1/etc/bashrc WM_NCOMPPROCS=4 WM_MPLIB=SYSTEMOPENMPI WM_ARCH_OPTION=32
The program 'mpicc' can be found in the following:
* lam4-dev
* libmpich-mpd1.0-dev
* libmpich-shmem1.0-dev
* libmpich1.0-dev
* libmpich2-dev
* libopenmpi-dev
* libopenmpi1.6-dev
Try: sudo apt-get install <selected package>
The program 'mpicc' can be found in the following:
* lam4-dev
* libmpich-mpd1.0-dev
* libmpich-shmem1.0-dev
* libmpich1.0-dev
* libmpich2-dev
* libopenmpi-dev
* libopenmpi1.6-dev
Try: sudo apt-get install < selected package >
eva@eva-Inspiron-1525:~$


All the best
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Old   March 4, 2013, 18:13
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Hi zania,

OK, start a new terminal.

Then run:
Code:
sudo apt-get install build-essential cmake flex bison zlib1g-dev qt4-dev-tools libqt4-dev
And then run:
Code:
sudo apt-get install gnuplot libreadline-dev libncurses-dev libxt-dev libopenmpi-dev openmpi-bin
Then try again:
Code:
source $HOME/OpenFOAM/OpenFOAM-2.1.1/etc/bashrc WM_NCOMPPROCS=4 WM_MPLIB=SYSTEMOPENMPI WM_ARCH_OPTION=32
Best regards,
Bruno
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Old   March 5, 2013, 09:07
Default Do I have to exit terminal?
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Hi Bruno

Q1) Do I have to exit terminal after the above two sudo … steps ?
Q2)After running code source … (of the above)
do I go to step #5 of the original instructions?
Thanks
All the best
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Old   March 5, 2013, 17:16
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Hi zania,

Quote:
Originally Posted by zania View Post
Q1) Do I have to exit terminal after the above two sudo … steps ?
Sorry, I forgot to emphasize that when using sudo in-line with the command, it does not require you to exit from root mode, because sudo will only go into root more for that one line.

Quote:
Originally Posted by zania View Post
Q2)After running code source … (of the above)
do I go to step #5 of the original instructions?
I was hoping you would tell me first if the same error still occurred or not.
If there aren't any more error messages, then you must go to step #4. It's only after step #4 that you can to #5 .

Best regards,
Bruno
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Old   March 7, 2013, 07:39
Default Can I add the echo … line now?
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Hello Bruno
I know I give you a hard time!
I did the steps
Code:
sudo apt-get install build-essential cmake flex bison zlib1g-dev qt4-dev-tools libqt4-dev
And then run:
Code:
sudo apt-get install gnuplot libreadline-dev libncurses-dev libxt-dev libopenmpi-dev openmpi-bin
Then try again:
Code:
source $HOME/OpenFOAM/OpenFOAM-2.1.1/etc/bashrc WM_NCOMPPROCS=4 WM_MPLIB=SYSTEMOPENMPI WM_ARCH_OPTION=32

eva@eva-Inspiron-1525:~$ source $HOME/OpenFOAM/OpenFOAM-2.1.1/etc/bashrc WM_NCOMPPROCS=4 WM_MPLIB=SYSTEMOPENMPI WM_ARCH_OPTION=32


with no error

I did notecho "source $HOME/OpenFOAM/OpenFOAM-2.1.1/etc/bashrc $FOAM_SETTINGS" >> $HOME/.bashrc
and then step #4

eva@eva-Inspiron-1525:~$ cd OpenFOAM-2.1.1
bash: cd: OpenFOAM-2.1.1: There is not such file

so I tried

eva@eva-Inspiron-1525:~$ ls
examples.desktop Ubuntu One Δημόσια Επιφάνεια εργασίας Πρότυπα
FOAM_RUN user Έγγραφα Λήψεις
OpenFOAM Βίντεο Εικόνες Μουσική
eva@eva-Inspiron-1525:~$ cd OpenFOAM
eva@eva-Inspiron-1525:~/OpenFOAM$ cd OpenFOAM-2.1.1
eva@eva-Inspiron-1525:~/OpenFOAM/OpenFOAM-2.1.1$ ./Allwmake > make.log 2>&1
eva@eva-Inspiron-1525:~/OpenFOAM/OpenFOAM-2.1.1$

eva@eva-Inspiron-1525:~/OpenFOAM/OpenFOAM-2.1.1$ ./Allwmake > make.log 2>&1
eva@eva-Inspiron-1525:~/OpenFOAM/OpenFOAM-2.1.1$ icoFoam -help

Usage: icoFoam [OPTIONS]
options:
-case <dir> specify alternate case directory, default is the cwd
-noFunctionObjects
do not execute functionObjects
-parallel run in parallel
-roots <(dir1 .. dirN)>
slave root directories for distributed running
-srcDoc display source code in browser
-doc display application documentation in browser
-help print the usage

Using: OpenFOAM-2.1.1 (see www.OpenFOAM.org)
Build: 2.1.1-221db2718bbb

eva@eva-Inspiron-1525:~/OpenFOAM/OpenFOAM-2.1.1$

The make log
make: Nothing to be done for `all'.

========================================
Start ThirdParty Allwmake
========================================

========================================
Build MPI libraries if required

======================================== etc
From within the case (cavity) directory
I typed blockMesh and got the message
Command missing or something like that
I do not have the line OpenFOAM … in the .bashrc file. Is it because of the missed echo … line? Can I type it now?

Thanks
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Old   March 7, 2013, 09:23
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You can do step #3 without any concerns. Feel free to edit the file "$HOME/.bashrc", to check what is already inside it.

As for not being able to run blockMesh, do as instructed in step #5:
Code:
#Create a tarball in case you've seen any errors (it's the first error that matters)
#or if you don't understand the output
#and attach the file "make.log.tar.gz" to a post in the designated thread
tar -czf make.log.tar.gz make.log
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Old   March 8, 2013, 06:07
Default The mistakes I made
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Hello Bruno
I got OpenFOAM installed finally (with much help)!
Thank you very much.

I had no experience at all in Ubuntu. The first mistake I made was at the beginning when I gave the code sudo, typing the user password, I was expecting ****** or something like that to appear. Since nothing happened I tried su.

All the Best
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Old   November 15, 2014, 17:56
Default Ubuntu 12.04
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Quote:
Originally Posted by zania View Post
Hello
To install I followed the instructions 2.4 Ubuntu 12.10
http://openfoamwiki.net/index.php/In...u#Ubuntu_12.10
by following the detailed step-by-step instructions below...
Steps:
  1. Switch to root mode (administrator) and install the necessary packages (run one line at a time):
… all the way down
I got a file OpenFOAM and within that
file OpenFOAM-2.1.1 (not the file ThirdParty-2.1.1) and
OpenFOAM-2.1.1.tgz
ThirdParty-2.1.1.tgz
icoFoam –help Does not give anything
gedit ~/.bashrc doesn’t contain line OpenFOAM
Question:Do I have to uninstall and start from the beginning?
Thanks
Hi Zania i followed the instruccion in openfoam wiki to install openfoam 2.2.1 but i dont have connection in the pc that i have ubuntu, how i can to get the procedure, or how i have to do with that
apt-get install build-essential cmake flex bison zlib1g-dev qt4-dev-tools libqt4-dev gnuplot libreadline-dev \ libncurses-dev libxt-dev libopenmpi-dev openmpi-bin

i cant install openfoam

best regards Zania
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