SD@TUB |
March 5, 2014 07:15 |
Truncated terminal output using 'Run-time Code Compilation in parallel'
Hi FOAMers,
I am working on Debian Squeeze (x64). Since version 2.2.x I need to install OF via
Code:
foamCompiler=ThirdParty
option because of minimum requirement for the compiler gcc.
Compilation went smooth, foamInstallationTest reports:
Code:
Checking basic setup...
-------------------------------------------------------------------------------
Shell: bash
Host: computer
OS: Linux version 2.6.32-5-amd64
-------------------------------------------------------------------------------
Checking main OpenFOAM env variables...
-------------------------------------------------------------------------------
Environment_variable Set_to_file_or_directory Valid Crit
-------------------------------------------------------------------------------
$WM_PROJECT_INST_DIR /prgz/OpenFOAM yes yes
$WM_PROJECT_USER_DIR /storage001/me/usrDev-2.3.x no no
$WM_THIRD_PARTY_DIR /prgz/OpenFOAM/ThirdParty-2.3.x yes yes
-------------------------------------------------------------------------------
Checking the OpenFOAM env variables set on the PATH...
-------------------------------------------------------------------------------
Environment_variable Set_to_file_or_directory Valid Path Crit
-------------------------------------------------------------------------------
$WM_PROJECT_DIR /prgz/OpenFOAM/OpenFOAM-2.3.x yes yes yes
$FOAM_APPBIN ...-2.3.x/platforms/linux64GccDPOpt/bin yes yes yes
$FOAM_SITE_APPBIN .../2.3.x/platforms/linux64GccDPOpt/bin no no
$FOAM_USER_APPBIN ...-2.3.x/platforms/linux64GccDPOpt/bin no no
$WM_DIR /prgz/OpenFOAM/OpenFOAM-2.3.x/wmake yes yes yes
-------------------------------------------------------------------------------
Checking the OpenFOAM env variables set on the LD_LIBRARY_PATH...
-------------------------------------------------------------------------------
Environment_variable Set_to_file_or_directory Valid Path Crit
-------------------------------------------------------------------------------
$FOAM_LIBBIN ...-2.3.x/platforms/linux64GccDPOpt/lib yes yes yes
$FOAM_SITE_LIBBIN .../2.3.x/platforms/linux64GccDPOpt/lib no no
$FOAM_USER_LIBBIN ...-2.3.x/platforms/linux64GccDPOpt/lib no no
$MPI_ARCH_PATH ...x/platforms/linux64Gcc/openmpi-1.6.5 yes yes yes
-------------------------------------------------------------------------------
Third party software
-------------------------------------------------------------------------------
Software Version Location
-------------------------------------------------------------------------------
flex 2.5.37 .../ThirdParty-2.3.x/platforms/linux64/gcc-4.8.2/bin/flex
[: 460: -lt: unexpected operator
[: 460: -gt: unexpected operator
[: 460: -lt: unexpected operator
[: 460: -gt: unexpected operator
[: 460: !=: unexpected operator
gcc ...M/ThirdParty-2.3.x/platforms/linux64/gcc-4.8.2/bin/gcc
gzip 1.3.12 /bin/gzip
tar 1.23 /bin/tar
icoFoam 2.3.x ...M/OpenFOAM-2.3.x/platforms/linux64GccDPOpt/bin/icoFoam
-------------------------------------------------------------------------------
Summary
-------------------------------------------------------------------------------
Base configuration ok.
Critical systems ok.
The solvers running both in serial and parallel mode. But, in parallel cases where I am using the Run-time Code Compilation functionality the terminal output is truncated everytime at line 52:
Code:
31 Pstream initialized with:
32 floatTransfer : 0
33 nProcsSimpleSum : 0
34 commsType : nonBlocking
35 polling iterations : 0
36 sigFpe : Enabling floating point exception trapping (FOAM_SIGFPE).
37 fileModificationChecking : Monitoring run-time modified files using timeStampMaster
38 allowSystemOperations : Allowing user-supplied system call operations
39
40 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
41 Create time
42
43 Create mesh for time = 0
44
45 Reading field p
46
47 Reading field U
48
49 Reading/calculating face flux field phi
50
51 Using #calcEntry at line 34 in file "/storage002/daum/runs/cpu/wigley/ms--hullNo03-doubleHullTest/constant/transportProperties"
52 Using #codeStream with "/storage002/daum/runs/cpu/wigley/ms--hullNo03-doubleHullTest/dynamicCode/platforms/linux64GccDPOpt/lib/libcodeStream_9a1af66df5a41e153af5341b0be9738563cb3a41.so"
although the process keeps running.
Does anyone know why or experienced the same? With version 2.1.x everything is working fine. I guessed that it might be due to OpenMPI, but I tried both the system version and that one provided by ThirdParty with no difference.
The foamInstallationTest-script also outputs the some warning lines, which were discussed somewhere else in this forum. But this should not be related to the problem above, shouldn' it?
Code:
[: 460: -lt: unexpected operator
[: 460: -gt: unexpected operator
[: 460: -lt: unexpected operator
[: 460: -gt: unexpected operator
[: 460: !=: unexpected operator
Thanks
/Stefan
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