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Old   August 30, 2008, 14:10
Default I have a very large pool of co
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David Herzfeld
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I have a very large pool of computational resources available using Condor, and would like to perform CFD simulations across this network. Since the software configuration of these computational nodes is largely unknown, I am attempting to statically compile OpenFOAM to allow for simple distribution of the executables I need (just simpleFOAM and icoFOAM). I am, however, running in to a large number of problems when trying to statically compile these needed executables.

1. I have changed the Allmake scripts to call wmake lib rather than wmake libso for all library instances. These libraries result in *.a's, without error.

2. I have added a -static flag to both the c and c++ rules files in wmake/rules/linuxGcc/c and wmake/rules/linuxGcc/c++

I am, however, still receiving an overwhelming number of errors during the compile/linking of any of the executables. See below:

g++ -m32 -static -Dlinux -DDP -O3 -DNoRepository -ftemplate-depth-40 -I/home/user/OpenFOAM/OpenFOAM-1.5/src/finiteVolume/lnInclude -I/home/user/OpenFOAM/OpenFOAM-1.5/src/sampling/lnInclude -IlnInclude -I. -I/home/user/OpenFOAM/OpenFOAM-1.5/src/OpenFOAM/lnInclude -I/home/user/OpenFOAM/OpenFOAM-1.5/src/OSspecific/Unix/lnInclude -fPIC -pthread -lOpenFOAM -lPstream Make/linuxGccDPOpt/financialFoam.o -L/home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt \
-lsampling -lmeshTools -lfiniteVolume -lOpenFOAM -ldl -lm -o /home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/financialFoam
/home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/libOpenFOAM.a(dlLibraryTable. o): In function `Foam::dlLibraryTable::open(Foam::fileName const&)':
dlLibraryTable.C.text+0x404): warning: Using 'dlopen' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking
Make/linuxGccDPOpt/financialFoam.o: In function `main':
financialFoam.C.text+0x15ef): undefined reference to `Foam::cpuTime::elapsedCpuTime() const'
Make/linuxGccDPOpt/financialFoam.o: In function `Foam::GeometricField<double,>::GeometricBoundaryF ield::evaluate()':
financialFoam.C.text._ZN4Foam14GeometricFieldIdNS_12fvPatchFieldE NS_7volMeshEE22GeometricBounda ryField8evaluateEv[Foam::GeometricField<double,>::GeometricBoundaryFi eld::evalua te()]+0x469): undefined reference to `Foam::IPstream::waitRequests()'
financialFoam.C.text._ZN4Foam14GeometricFieldIdNS_12fvPatchFieldE NS_7volMeshEE22GeometricBounda ryField8evaluateEv[Foam::GeometricField<double,>::GeometricBoundaryFi eld::evalua te()]+0x471): undefined reference to `Foam:Pstream::waitRequests()'
/home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/libfiniteVolume.a(fvMeshGeome try.o): In function `Foam::GeometricField<foam::vector<double>, Foam::fvPatchField, Foam::volMesh>::GeometricBoundaryField::evaluate() ':
fvMeshGeometry.C.text._ZN4Foam14GeometricFieldINS_6VectorIdEENS_12 fvPatchFieldENS_7volMeshEE22Ge ometricBoundaryField8evaluateEv[Foam::GeometricField<foam::vector<double>, Foam::fvPatchField, Foam::volMesh>::GeometricBoundaryField::evaluate()]+0x469): undefined reference to `Foam::IPstream::waitRequests()'
fvMeshGeometry.C.text._ZN4Foam14GeometricFieldINS_6VectorIdEENS_12 fvPatchFieldENS_7volMeshEE22Ge ometricBoundaryField8evaluateEv[Foam::GeometricField<foam::vector<double>, Foam::fvPatchField, Foam::volMesh>::GeometricBoundaryField::evaluate()]+0x471): undefined reference to `Foam:Pstream::waitRequests()'
/home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/libfiniteVolume.a(fvMesh.o): In function `Foam::fvMesh::fvMesh(Foam::IOobject const&)':
fvMesh.C.text+0x300d): undefined reference to `Foam::file(Foam::fileName const&)'
fvMesh.C.text+0x3290): undefined reference to `Foam::file(Foam::fileName const&)'
/home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/libfiniteVolume.a(fvMesh.o): In function `Foam::fvMesh::fvMesh(Foam::IOobject const&)':
fvMesh.C.text+0x400d): undefined reference to `Foam::file(Foam::fileName const&)'
fvMesh.C.text+0x4290): undefined reference to `Foam::file(Foam::fileName const&)'
/home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/libfiniteVolume.a(fvScalarMat rix.o): In function `Foam::fvMatrix<double>::setComponentReference(int , int, unsigned char, double)':
fvScalarMatrix.C.text+0x18c1): undefined reference to `Foam::IPstream::read(Foam::Pstream::commsTypes, int, char*, int)'
fvScalarMatrix.C.text+0x1944): undefined reference to `Foam:Pstream::write(Foam::Pstream::commsTypes, int, char const*, int)'
fvScalarMatrix.C.text+0x19c9): undefined reference to `Foam::IPstream::read(Foam::Pstream::commsTypes, int, char*, int)'
fvScalarMatrix.C.text+0x1a54): undefined reference to `Foam:Pstream::write(Foam::Pstream::commsTypes, int, char const*, int)'
fvScalarMatrix.C.text+0x1c23): undefined reference to `Foam::IPstream::read(Foam::Pstream::commsTypes, int, char*, int)'
fvScalarMatrix.C.text+0x1c4b): undefined reference to `Foam::IPstream::read(Foam::Pstream::commsTypes, int, char*, int)'
fvScalarMatrix.C.text+0x1c73): undefined reference to `Foam:Pstream::write(Foam::Pstream::commsTypes, int, char const*, int)'
fvScalarMatrix.C.text+0x1c9b): undefined reference to `Foam:Pstream::write(Foam::Pstream::commsTypes, int, char const*, int)'
/home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/libfiniteVolume.a(surfaceInte rpolation.o): In function `Foam::surfaceInterpolation::makeCorrectionVectors () const':
surfaceInterpolation.C.text+0x1c00): undefined reference to `Foam::IPstream::read(Foam::Pstream::commsTypes, int, char*, int)'
surfaceInterpolation.C.text+0x1c31): undefined reference to `Foam:Pstream::write(Foam::Pstream::commsTypes, int, char const*, int)'
surfaceInterpolation.C.text+0x1c78): undefined reference to `Foam::IPstream::read(Foam::Pstream::commsTypes, int, char*, int)'
surfaceInterpolation.C.text+0x1cb9): undefined reference to `Foam:Pstream::write(Foam::Pstream::commsTypes, int, char const*, int)'
surfaceInterpolation.C.text+0x1e5b): undefined reference to `Foam::IPstream::read(Foam::Pstream::commsTypes, int, char*, int)'
surfaceInterpolation.C.text+0x1e8c): undefined reference to `Foam:Pstream::write(Foam::Pstream::commsTypes, int, char const*, int)'
surfaceInterpolation.C.text+0x1ed3): undefined reference to `Foam::IPstream::read(Foam::Pstream::commsTypes, int, char*, int)'
surfaceInterpolation.C.text+0x1f14): undefined reference to `Foam:Pstream::write(Foam::Pstream::commsTypes, int, char const*, int)'

These errors continue and occur for the compile/link of every executable (resulting in no binaries at all). I remade libOpenFOAM, believing that it was the problem, but the errors were the same. I have also added -lOpenFOAM and -lPstream to the link lines in the rules directory, but with no result. In an act of final desperation, I actually added references to every *.a file located in /lib/linuxGcc to the link path in rules. I still receive the same errors.

Oddly enough, removing the -static flag from the rules files results in working (but dynamically/shared linked) executables, with no errors. Am I missing another step in my static compilation that the shared libraries somehow account for?

I have been working on this for a little over a month now, any help would be extremely appreciated.

Thanks,
David
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Old   September 1, 2008, 04:21
Default Easy way out is to run 'statif
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Mattijs Janssens
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Easy way out is to run 'statifier'. Converts executable with its libraries into single statically linked executable. Google for 'ELF statifier'.
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Old   September 1, 2008, 10:45
Default Thanks, I will try it.
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Thanks, I will try it.
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Old   September 1, 2008, 11:20
Default I have tried using statifier t
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I have tried using statifier to compose the pseudo-static executables of both icoFoam and simpleFoam. However, when I try to run either of these new executables I receive a segmentation fault.

I recieve the following output from both files:
Exec : ./simpleFoamStatic
Date : Sep 01 2008
Time : 02:56:47
Host : ---------------
PID : 18460
Segmentation fault

Thanks,
David
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Old   September 1, 2008, 11:22
Default Running the program in gdb, sh
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Running the program in gdb, shows the following error messages:

Exec : /home/herzfeldd/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoamStat ic
Date : Sep 01 2008
Time : 03:01:20
Host : sunpassage.eng.mu.edu
PID : 18469
[New Thread 0xb7f2cae0 (LWP 18469)]

Program received signal SIGSEGV, Segmentation fault.
0x00899c48 in strcmp () from /lib/ld-linux.so.2
Missing separate debuginfos, use: debuginfo-install glibc.i686

David
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Old   September 1, 2008, 12:58
Default I just did (with statifier 1.6
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I just did (with statifier 1.6.3)

statifier `which icoFoam` icoFoam-static

and then can run icoFoam-static on cavity tutorial without problems.
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Old   September 1, 2008, 13:24
Default I am still receiving a segment
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I am still receiving a segmentation fault from some executable (not sure if it is the static icoFoam though), perhaps you could shed some light on it.

I performed the same commands that you did:

cd ~/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/
statifier `which icoFoam` icoFoam-static

An executable, icoFoam-static, results. Running the program with no input results in a segmentation fault.

Running the original icoFoam executable on the cavity test cases results in no errors:

Running blockMesh on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavity
Running icoFoam on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavity
Cloning cavityFine case from cavity
Running blockMesh on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityFine
Running mapFields from cavity to cavityFine
Running icoFoam on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityFine
Running blockMesh on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityGrade
Running mapFields from cavityFine to cavityGrade
Running icoFoam on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityGrade
Cloning cavityHighRe case from cavity
Setting cavityHighRe to generate a secondary vortex
Copying cavity/0* directory to cavityHighRe
Running blockMesh on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityHighRe
Running icoFoam on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityHighRe
Running blockMesh on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityClipped
Running mapFields from cavity to cavityClipped
Running icoFoam on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityClipped
fluentMeshToFoam: converting mesh elbow/elbow.msh
Running icoFoam on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/elbow
Running foamMeshToFluent on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/elbow
Running foamDataToFluent on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/elbow


Then I ran ./Allclean and changed Allrun to use the icoFoam-static executable (ie replaced application=`basename $PWD`
with application=icoFoam-static), here's the output:

Running blockMesh on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavity
Running icoFoam-static on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavity
Cloning cavityFine case from cavity
Running blockMesh on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityFine
Running mapFields from cavity to cavityFine
Running icoFoam-static on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityFine
/home/user/OpenFOAM/OpenFOAM-1.5/bin/tools/RunFunctions: line 33: 21915 Segmentation fault $APP_RUN $* > log.$APP_RUN 2>&1
Running blockMesh on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityGrade
Running mapFields from cavityFine to cavityGrade
Running icoFoam-static on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityGrade
/home/user/OpenFOAM/OpenFOAM-1.5/bin/tools/RunFunctions: line 33: 21921 Segmentation fault $APP_RUN $* > log.$APP_RUN 2>&1
Cloning cavityHighRe case from cavity
Setting cavityHighRe to generate a secondary vortex
Copying cavity/0* directory to cavityHighRe
Running blockMesh on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityHighRe
Running icoFoam-static on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityHighRe
/home/user/OpenFOAM/OpenFOAM-1.5/bin/tools/RunFunctions: line 33: 21934 Segmentation fault $APP_RUN $* > log.$APP_RUN 2>&1
Running blockMesh on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityClipped
Running mapFields from cavity to cavityClipped
Running icoFoam-static on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityClipped
/home/user/OpenFOAM/OpenFOAM-1.5/bin/tools/RunFunctions: line 33: 21943 Segmentation fault $APP_RUN $* > log.$APP_RUN 2>&1
fluentMeshToFoam: converting mesh elbow/elbow.msh
Running icoFoam-static on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/elbow
/home/user/OpenFOAM/OpenFOAM-1.5/bin/tools/RunFunctions: line 33: 21946 Segmentation fault $APP_RUN $* > log.$APP_RUN 2>&1
Running foamMeshToFluent on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/elbow
Running foamDataToFluent on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/elbow

A BIG thanks for all your help thus far (in one day I am already father along that a whole month previous),

David
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Old   September 1, 2008, 15:13
Default Executables packed with statif
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Valery Reznic
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Executables packed with statifier doesn't like systems with vDSO and/or stack randomization.

Executables packed with Ermine - http://magicErmine.com (while propertiary)
usually behave themselv on such systems.
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Old   September 2, 2008, 03:51
Default Hi David, ran all icoFoam t
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Hi David,

ran all icoFoam testcases (since your cavity ran fine but not the other cases) successfully. This is on Suse10.2, gcc 4.3.1. Are you running something like Valery suggested (randomisation etc. How do you find this out?)
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Old   September 2, 2008, 05:27
Default It's looks like you have LD_LI
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It's looks like you have LD_LIBRARY_PATH environment variable set.

You can try
./ErmineLight.i386 --ld_library_path="$LD_LIBRARY_PATH" icoFoam --output=icoFoam-static
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Old   September 2, 2008, 10:20
Default Mattijs, I am not sure how to
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Mattijs, I am not sure how to test for vDSO or stack randomization (or confirm that either exist on my system).

However, IT WORKED! Sending LD_LIBRARY_PATH to Ermine produced an executable that works in all test cases.

Valery, could you try to explain why Ermine worked but statifier did not?

I am a running Fedora Core 9, with SMP enabled on two i686 processors.

Thanks for all your help!

David
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Old   September 2, 2008, 10:30
Default Another problem just cropped u
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Another problem just cropped up...

The statically compiled executables (icoFoam-static and simpleFoam-static) work correctly on the original computer, but moving these executables over to a different computer with the same architecture produces a segmentation fault immediately.

Here is the architecture of the computer that I created the static executables on (uname -a)

Linux localhost.localdomain 2.6.25-14.fc9.i686 #1 SMP Thu May 1 06:28:41 EDT 2008 i686 i686 i386 GNU/Linux

Here's the new box:
Linux localhost2.localdomain 2.6.20-1.2320.fc5smp #1 SMP Tue Jun 12 19:40:16 EDT 2007 i686 i686 i386 GNU/Linux


Could it be the differences in the kernel?
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Old   September 2, 2008, 11:49
Default Hi David! Can't rule out th
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Hi David!

Can't rule out the kernel. But another thing is that usually OF-executables need a "minimal" OF-environment that consists of (I'm doing this from memory so it's a bit vague)

- one or two environment variables ($WM_something ...)
- one or two files whose location depends on the environment variables (the system-wide controlDict is one of them I think)

If your other machine "sees" your OF-installation (env-variables & files) this shouldn't be the problem)

Try to run the executable with strace (this might give you more information on the why of the segmentation fault)

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Old   September 2, 2008, 12:12
Default Hi, David. When you wrote "st
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Hi, David.
When you wrote "static" you mean packed with Ermine ?
If yes could you show output of
strace <your_program>

Valery.
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Old   September 2, 2008, 14:02
Default Valey: Yes, when I said "stati
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Valey: Yes, when I said "static" I meant packed with Ermine.

Bernhard: I moved the icoFoam and simpleFoam packed executables with an updated kernel, still I receive a segmentation fault.

Below is the output for strace and both the local and remote systems (I had to split it all up because it exceeds the size limit for the forum).

David
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Old   September 2, 2008, 14:05
Default Local System: execve("/home/u
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Local System:
execve("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam- static", ["icoFoam-static"], [/* 72 vars */]) = 0
readlink("/proc/self/exe", "/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-static" , 4096) = 83
uname({sys="Linux", node="locahost.eng.mu.edu", ...}) = 0
open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3
fstat64(3, {st_mode=S_IFREG|0775, st_size=28475548, ...}) = 0
old_mmap(NULL, 16384, PROT_READ, MAP_PRIVATE, 3, 0xd000) = 0xb7f7d000
close(3) = 0
open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3
lseek(3, 22077440, SEEK_SET) = 22077440
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\2\0\3\0\1\0\0\0\3 20\220\5\0104\0\0\0"..., 512) = 512
open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 4
lseek(4, 69632, SEEK_SET) = 69632
read(4, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\000 08\210\0004\0\0\0"..., 512) = 512
readlink("/proc/self/exe", "/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-static" , 4096) = 83
lseek(3, -512, SEEK_CUR) = 22077440
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\2\0\3\0\1\0\0\0\3 20\220\5\0104\0\0\0"..., 512, 22077440) = 512
old_mmap(0x8048000, 368640, PROT_READ, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x8048000
old_mmap(0x8048000, 364544, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x8048000
lseek(3, 22077440, SEEK_SET) = 22077440
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\2\0\3\0\1\0\0\0\3 20\220\5\0104\0\0\0"..., 364544, 22077440) = 364544
mprotect(0x8048000, 364544, PROT_READ|PROT_EXEC) = 0
old_mmap(0x80a1000, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED, 3, 0x1566000) = 0x80a1000
close(3) = 0
lseek(4, -512, SEEK_CUR) = 69632
pread64(4, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\000 08\210\0004\0\0\0"..., 512, 69632) = 512
old_mmap(0x883000, 122880, PROT_READ, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x883000
old_mmap(0x883000, 114688, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x883000
lseek(4, 69632, SEEK_SET) = 69632
pread64(4, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\000 08\210\0004\0\0\0"..., 114688, 69632) = 114688
mprotect(0x883000, 114688, PROT_READ|PROT_EXEC) = 0
old_mmap(0x89f000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED, 4, 0x2d000) = 0x89f000
close(4) = 0
brk(0) = 0x109cc000
mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb7f7c000
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/tls", 0xbf97e430) = -1 ENOENT (No such file or directory)
open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3
lseek(3, 6942720, SEEK_SET) = 6942720
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0`\ 207#\0004\0\0\0"..., 512) = 512
mmap2(NULL, 10675996, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x69f) = 0xb754d000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0`\ 207#\0004\0\0\0"..., 10675996, 6942720) = 10675996
mprotect(0xb754d000, 10531003, PROT_READ|PROT_EXEC) = 0
mmap2(0xb7f59000, 131072, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x10aa) = 0xb7f59000
mmap2(0xb7f79000, 10012, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xb7f79000
close(3) = 0
open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3
lseek(3, 2469888, SEEK_SET) = 2469888
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0P\ 20\f\0004\0\0\0"..., 512) = 512
mmap2(NULL, 3829360, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x25b) = 0xb71a6000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0P\ 20\f\0004\0\0\0"..., 3829360, 2469888) = 3829360
mprotect(0xb71a6000, 3758785, PROT_READ|PROT_EXEC) = 0
mmap2(0xb753c000, 53248, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x5f0) = 0xb753c000
mmap2(0xb7549000, 15984, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xb7549000
close(3) = 0
stat64("/home/user/OpenFOAM/ThirdParty/gcc-4.3.1/platforms/linux/lib/tls", 0xbf97e3f8) = -1 ENOENT (No such file or directory)
stat64("/home/user/OpenFOAM/ThirdParty/gcc-4.3.1/platforms/linux/lib", {st_mode=S_IFDIR|0750, st_size=4096, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/openmpi-1.2.6/tls", 0xbf97e3f8) = -1 ENOENT (No such file or directory)
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/openmpi-1.2.6", {st_mode=S_IFDIR|0750, st_size=4096, ...}) = 0
stat64("/home/user/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOpt/lib /tls", 0xbf97e3f8) = -1 ENOENT (No such file or directory)
stat64("/home/user/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOpt/lib ", {st_mode=S_IFDIR|0750, st_size=4096, ...}) = 0
stat64("/lib/tls", {st_mode=S_IFDIR|0755, st_size=4096, ...}) = 0
open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3
lseek(3, 1970176, SEEK_SET) = 1970176
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0`\ 232\243\0004\0\0\0"..., 512) = 512
mmap2(0xa39000, 16500, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x1e1) = 0xa39000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0`\ 232\243\0004\0\0\0"..., 16500, 1970176) = 16500
mprotect(0xa39000, 8364, PROT_READ|PROT_EXEC) = 0
mmap2(0xa3c000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x1e3) = 0xa3c000
close(3) = 0
open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3
lseek(3, 22835200, SEEK_SET) = 22835200
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 00\352\3\0004\0\0\0"..., 512) = 512
mmap2(NULL, 952504, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x15c7) = 0xb70bd000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 00\352\3\0004\0\0\0"..., 952504, 22835200) = 952504
mprotect(0xb70bd000, 905520, PROT_READ|PROT_EXEC) = 0
mmap2(0xb719b000, 20480, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x16a4) = 0xb719b000
mmap2(0xb71a0000, 22712, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xb71a0000
close(3) = 0
open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3
lseek(3, 1990656, SEEK_SET) = 1990656
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0 \0 \24\241\0004\0\0\0"..., 512) = 512
mmap2(0xa0e000, 163952, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x1e6) = 0xa0e000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0 \0 \24\241\0004\0\0\0"..., 163952, 1990656) = 163952
mprotect(0xa0e000, 156364, PROT_READ|PROT_EXEC) = 0
mmap2(0xa35000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x20c) = 0xa35000
close(3) = 0
open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3
lseek(3, 22556672, SEEK_SET) = 22556672
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 40\30\0\0004\0\0\0"..., 512) = 512
mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb70bc000
mmap2(NULL, 51528, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x1583) = 0xb70af000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 40\30\0\0004\0\0\0"..., 51528, 22556672) = 51528
mprotect(0xb70af000, 46644, PROT_READ|PROT_EXEC) = 0
mmap2(0xb70bb000, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x158e) = 0xb70bb000
close(3) = 0
open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3
lseek(3, 2318336, SEEK_SET) = 2318336
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 0(\246\0004\0\0\0"..., 512) = 512
mmap2(0xa5e000, 98784, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x236) = 0xa5e000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 0(\246\0004\0\0\0"..., 98784, 2318336) = 98784
mprotect(0xa5e000, 85088, PROT_READ|PROT_EXEC) = 0
mmap2(0xa73000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x24a) = 0xa73000
mmap2(0xa75000, 4576, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xa75000
close(3) = 0
open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3
lseek(3, 208896, SEEK_SET) = 208896
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0@\ 227\213\0004\0\0\0"..., 512) = 512
mmap2(0x8a3000, 1476176, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x33) = 0x8a3000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0@\ 227\213\0004\0\0\0"..., 1476176, 208896) = 1476176
mprotect(0x8a3000, 1453240, PROT_READ|PROT_EXEC) = 0
mmap2(0xa06000, 12288, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x196) = 0xa06000
mmap2(0xa09000, 9808, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xa09000
close(3) = 0
open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3
lseek(3, 22511616, SEEK_SET) = 22511616
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 60*\0\0004\0\0\0"..., 512) = 512
mmap2(NULL, 38236, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x1578) = 0xb70a5000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 60*\0\0004\0\0\0"..., 38236, 22511616) = 38236
mprotect(0xb70a5000, 33018, PROT_READ|PROT_EXEC) = 0
mmap2(0xb70ae000, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x1580) = 0xb70ae000
close(3) = 0
open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3
lseek(3, 21483520, SEEK_SET) = 21483520
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 60\334\0\0004\0\0\0"..., 512) = 512
mmap2(NULL, 454972, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x147d) = 0xb7035000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 60\334\0\0004\0\0\0"..., 454972, 21483520) = 454972
mprotect(0xb7035000, 450554, PROT_READ|PROT_EXEC) = 0
mmap2(0xb70a3000, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x14eb) = 0xb70a3000
mmap2(0xb70a4000, 316, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xb70a4000
close(3) = 0
open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3
lseek(3, 19566592, SEEK_SET) = 19566592
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\0 f\4\0004\0\0\0"..., 512) = 512
mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb7034000
mmap2(NULL, 1680608, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x12a9) = 0xb6e99000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\0 f\4\0004\0\0\0"..., 1680608, 19566592) = 1680608
mprotect(0xb6e99000, 1661926, PROT_READ|PROT_EXEC) = 0
mmap2(0xb702f000, 16384, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x143f) = 0xb702f000
mmap2(0xb7033000, 1248, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xb7033000
close(3) = 0
open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3
lseek(3, 21987328, SEEK_SET) = 21987328
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0 \0 \26\0\0004\0\0\0"..., 512) = 512
mmap2(NULL, 78564, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x14f8) = 0xb6e85000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0 \0 \26\0\0004\0\0\0"..., 78564, 21987328) = 78564
mprotect(0xb6e85000, 77700, PROT_READ|PROT_EXEC) = 0
mmap2(0xb6e98000, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x150b) = 0xb6e98000
close(3) = 0
open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3
lseek(3, 27205632, SEEK_SET) = 27205632
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 20*\1\0004\0\0\0"..., 512) = 512
mmap2(NULL, 510168, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x19f2) = 0xb6e08000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 20*\1\0004\0\0\0"..., 510168, 27205632) = 510168
mprotect(0xb6e08000, 452196, PROT_READ|PROT_EXEC) = 0
mmap2(0xb6e77000, 32768, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x1a60) = 0xb6e77000
mmap2(0xb6e7f000, 22744, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xb6e7f000
close(3) = 0
open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3
lseek(3, 19533824, SEEK_SET) = 19533824
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 40\"\0\0004\0\0\0"..., 512) = 512
mmap2(NULL, 21320, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x12a1) = 0xb6e02000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 40\"\0\0004\0\0\0"..., 21320, 19533824) = 21320
mprotect(0xb6e02000, 20208, PROT_READ|PROT_EXEC) = 0
mmap2(0xb6e07000, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x12a6) = 0xb6e07000
close(3) = 0
open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3
lseek(3, 28073984, SEEK_SET) = 28073984
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 20\334\0\0004\0\0\0"..., 512) = 512
mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb6e01000
mmap2(NULL, 339872, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x1ac6) = 0xb6dae000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 20\334\0\0004\0\0\0"..., 339872, 28073984) = 339872
mprotect(0xb6dae000, 327544, PROT_READ|PROT_EXEC) = 0
mmap2(0xb6dfe000, 12288, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x1b16) = 0xb6dfe000
close(3) = 0
open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3
lseek(3, 27803648, SEEK_SET) = 27803648
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 20\233\0\0004\0\0\0"..., 512) = 512
mmap2(NULL, 362688, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x1a84) = 0xb6d55000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 20\233\0\0004\0\0\0"..., 362688, 27803648) = 362688
mprotect(0xb6d55000, 213688, PROT_READ|PROT_EXEC) = 0
mmap2(0xb6d8a000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x1ab8) = 0xb6d8a000
mmap2(0xb6d8c000, 137408, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xb6d8c000
close(3) = 0
open("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOpt/ lib/tls/i386/libnsl.so.1", O_RDONLY) = -1 ENOENT (No such file or directory)
stat64("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOp t/lib/tls/i386", 0xbf97db74) = -1 ENOENT (No such file or directory)
open("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOpt/ lib/tls/libnsl.so.1", O_RDONLY) = -1 ENOENT (No such file or directory)
stat64("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOp t/lib/tls", 0xbf97db74) = -1 ENOENT (No such file or directory)
open("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOpt/ lib/i386/libnsl.so.1", O_RDONLY) = -1 ENOENT (No such file or directory)
stat64("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOp t/lib/i386", 0xbf97db74) = -1 ENOENT (No such file or directory)
open("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOpt/ lib/libnsl.so.1", O_RDONLY) = -1 ENOENT (No such file or directory)
stat64("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOp t/lib", 0xbf97db74) = -1 ENOENT (No such file or directory)
open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3
lseek(3, 2203648, SEEK_SET) = 2203648
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\000 0\321|\0004\0\0\0"..., 512) = 512
mmap2(0x7ca000, 104392, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x21a) = 0x7ca000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\000 0\321|\0004\0\0\0"..., 104392, 2203648) = 104392
mprotect(0x7ca000, 87276, PROT_READ|PROT_EXEC) = 0
mmap2(0x7e0000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x22f) = 0x7e0000
mmap2(0x7e2000, 6088, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x7e2000
close(3) = 0
open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3
lseek(3, 2453504, SEEK_SET) = 2453504
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0 \0 \332J\0074\0\0\0"..., 512) = 512
mmap2(0x74ad000, 12420, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x257) = 0x74ad000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0 \0 \332J\0074\0\0\0"..., 12420, 2453504) = 12420
mprotect(0x74ad000, 6148, PROT_READ|PROT_EXEC) = 0
mmap2(0x74af000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x258) = 0x74af000
close(3) = 0
mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb6d54000
mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb6d53000
set_thread_area({entry_number:-1 -> 6, base_addr:0xb6d538e0, limit:1048575, seg_32bit:1, contents:0, read_exec_only:0, limit_in_pages:1, seg_not_present:0, useable:1}) = 0
set_tid_address(0xb6d53928) = 25610
set_robust_list(0xb6d53930, 0xc) = 0
futex(0xbf97eb80, FUTEX_WAKE_PRIVATE, 1) = 0
rt_sigaction(SIGRTMIN, {0xa622c0, [], SA_SIGINFO}, NULL, 8) = 0
rt_sigaction(SIGRT_1, {0xa62700, [], SA_RESTART|SA_SIGINFO}, NULL, 8) = 0
rt_sigprocmask(SIG_UNBLOCK, [RTMIN RT_1], NULL, 8) = 0
getrlimit(RLIMIT_STACK, {rlim_cur=10240*1024, rlim_max=RLIM_INFINITY}) = 0
uname({sys="Linux", node="locahost.eng.mu.edu", ...}) = 0
futex(0xb71a06dc, FUTEX_WAKE_PRIVATE, 2147483647) = 0
futex(0xb71a5848, FUTEX_WAKE_PRIVATE, 2147483647) = 0
futex(0xb71a5868, FUTEX_WAKE_PRIVATE, 2147483647) = 0
brk(0) = 0x109cc000
brk(0x109ed000) = 0x109ed000
stat64("/root/.OpenFOAM", 0xbf97e824) = -1 ENOENT (No such file or directory)
stat64("/home/user/OpenFOAM", {st_mode=S_IFDIR|0775, st_size=4096, ...}) = 0
stat64("/home/user/OpenFOAM/site/1.5/controlDict", 0xbf97e814) = -1 ENOENT (No such file or directory)
stat64("/home/user/OpenFOAM/site/1.5/controlDict", 0xbf97e7d4) = -1 ENOENT (No such file or directory)
stat64("/home/user/OpenFOAM/site/1.5/controlDict.gz", 0xbf97e7d4) = -1 ENOENT (No such file or directory)
stat64("/home/user/OpenFOAM/site/controlDict", 0xbf97e814) = -1 ENOENT (No such file or directory)
stat64("/home/user/OpenFOAM/site/controlDict", 0xbf97e7d4) = -1 ENOENT (No such file or directory)
stat64("/home/user/OpenFOAM/site/controlDict.gz", 0xbf97e7d4) = -1 ENOENT (No such file or directory)
stat64("/home/user/OpenFOAM/OpenFOAM-1.5", {st_mode=S_IFDIR|0755, st_size=4096, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/etc/controlDict", {st_mode=S_IFREG|0640, st_size=25240, ...}) = 0
open("/home/user/OpenFOAM/OpenFOAM-1.5/etc/controlDict", O_RDONLY|O_LARGEFILE) = 3
read(3, "/*------------------------------"..., 8191) = 8191
read(3, "0;\n cellToCell 0;\n "..., 8191) = 8191
brk(0x10a0e000) = 0x10a0e000
brk(0x10a0d000) = 0x10a0d000
read(3, "orinsky 0;\n mixedUnburntEn"..., 8191) = 8191
read(3, "Universal gas constant [J/(kmol "..., 8191) = 667
read(3, "", 8191) = 0
close(3) = 0
brk(0x10a2e000) = 0x10a2e000
stat64("/dev/null.gz", 0xbf97e824) = -1 ENOENT (No such file or directory)
stat64("/dev/null.gz.gz", 0xbf97e824) = -1 ENOENT (No such file or directory)
open("/dev/null", O_WRONLY|O_CREAT|O_TRUNC|O_LARGEFILE, 0666) = 3
stat64("/root/.OpenFOAM", 0xbf97e854) = -1 ENOENT (No such file or directory)
stat64("/home/user/OpenFOAM", {st_mode=S_IFDIR|0775, st_size=4096, ...}) = 0
stat64("/home/user/OpenFOAM/site/1.5/cellModels", 0xbf97e844) = -1 ENOENT (No such file or directory)
stat64("/home/user/OpenFOAM/site/1.5/cellModels", 0xbf97e804) = -1 ENOENT (No such file or directory)
stat64("/home/user/OpenFOAM/site/1.5/cellModels.gz", 0xbf97e804) = -1 ENOENT (No such file or directory)
stat64("/home/user/OpenFOAM/site/cellModels", 0xbf97e844) = -1 ENOENT (No such file or directory)
stat64("/home/user/OpenFOAM/site/cellModels", 0xbf97e804) = -1 ENOENT (No such file or directory)
stat64("/home/user/OpenFOAM/site/cellModels.gz", 0xbf97e804) = -1 ENOENT (No such file or directory)
stat64("/home/user/OpenFOAM/OpenFOAM-1.5", {st_mode=S_IFDIR|0755, st_size=4096, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/etc/cellModels", {st_mode=S_IFREG|0640, st_size=7754, ...}) = 0
open("/home/user/OpenFOAM/OpenFOAM-1.5/etc/cellModels", O_RDONLY|O_LARGEFILE) = 4
read(4, "/*------------------------------"..., 8191) = 7754
close(4) = 0
uname({sys="Linux", node="locahost.eng.mu.edu", ...}) = 0
times({tms_utime=24, tms_stime=5, tms_cutime=0, tms_cstime=0}) = 558148283
brk(0x10a4f000) = 0x10a4f000
fstat64(1, {st_mode=S_IFCHR|0620, st_rdev=makedev(136, 0), ...}) = 0
mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb6d52000
write(1, "/*------------------------------"..., 80/*---------------------------------------------------------------------------* \
) = 80
write(1, "| ========= | "..., 160| ========= | |
| \ / F ield | OpenFOAM: The Open Source CFD Toolbox |
) = 160
write(1, "| \\ / O peration | Ve"..., 320| \ / O peration | Version: 1.5 |
| \ / A nd | Web: http://www.OpenFOAM.org |
| \/ M anipulation | |
\*---------------------------------------------------------------------------*/

Continued Below
herzfeldd is offline   Reply With Quote

Old   September 2, 2008, 14:06
Default ) = 320 time(NULL)
  #17
New Member
 
David Herzfeld
Join Date: Mar 2009
Posts: 11
Rep Power: 8
herzfeldd is on a distinguished road
) = 320
time(NULL) = 1220351549
open("/etc/localtime", O_RDONLY) = 4
fstat64(4, {st_mode=S_IFREG|0644, st_size=3543, ...}) = 0
fstat64(4, {st_mode=S_IFREG|0644, st_size=3543, ...}) = 0
mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb6d51000
read(4, "TZif2\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\5\0\0\0 \5\0\0\0\0"..., 4096) = 3543
_llseek(4, -24, [3519], SEEK_CUR) = 0
read(4, "\nCST6CDT,M3.2.0,M11.1.0\n", 4096) = 24
close(4) = 0
munmap(0xb6d51000, 4096) = 0
time(NULL) = 1220351549
stat64("/etc/localtime", {st_mode=S_IFREG|0644, st_size=3543, ...}) = 0
uname({sys="Linux", node="locahost.eng.mu.edu", ...}) = 0
write(1, "Exec : icoFoam-static\n", 24Exec : icoFoam-static
) = 24
write(1, "Date : Sep 02 2008\n", 21Date : Sep 02 2008
) = 21
write(1, "Time : 05:32:29\n", 18Time : 05:32:29
) = 18
write(1, "Host : locahost.eng.mu.edu\n", 31Host : locahost.eng.mu.edu
) = 31
write(1, "PID : 25610\n", 15PID : 25610
) = 15
getuid32() = 0
socket(PF_FILE, SOCK_STREAM, 0) = 4
fcntl64(4, F_SETFL, O_RDWR|O_NONBLOCK) = 0
connect(4, {sa_family=AF_FILE, path="/var/run/nscd/socket"}, 110) = -1 ENOENT (No such file or directory)
close(4) = 0
socket(PF_FILE, SOCK_STREAM, 0) = 4
fcntl64(4, F_SETFL, O_RDWR|O_NONBLOCK) = 0
connect(4, {sa_family=AF_FILE, path="/var/run/nscd/socket"}, 110) = -1 ENOENT (No such file or directory)
close(4) = 0
open("/etc/nsswitch.conf", O_RDONLY) = 4
fstat64(4, {st_mode=S_IFREG|0644, st_size=1708, ...}) = 0
mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb6d51000
read(4, "#\n# /etc/nsswitch.conf\n#\n# An ex"..., 4096) = 1708
read(4, "", 4096) = 0
close(4) = 0
munmap(0xb6d51000, 4096) = 0
open("/home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/tls/libnss_files.so.2", O_RDONLY) = -1 ENOENT (No such file or directory)
open("/home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/libnss_files.so.2", O_RDONLY) = -1 ENOENT (No such file or directory)
open("/home/user/OpenFOAM/ThirdParty/gcc-4.3.1/platforms/linux/lib/tls/libnss_fi les.so.2", O_RDONLY) = -1 ENOENT (No such file or directory)
open("/home/user/OpenFOAM/ThirdParty/gcc-4.3.1/platforms/linux/lib/libnss_files. so.2", O_RDONLY) = -1 ENOENT (No such file or directory)
open("/home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/openmpi-1.2.6/tls/libns s_files.so.2", O_RDONLY) = -1 ENOENT (No such file or directory)
open("/home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/openmpi-1.2.6/libnss_fi les.so.2", O_RDONLY) = -1 ENOENT (No such file or directory)
open("/home/user/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOpt/lib/t ls/libnss_files.so.2", O_RDONLY) = -1 ENOENT (No such file or directory)
open("/home/user/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOpt/lib/l ibnss_files.so.2", O_RDONLY) = -1 ENOENT (No such file or directory)
open("/lib/tls/libnss_files.so.2", O_RDONLY) = -1 ENOENT (No such file or directory)
open("/lib/libnss_files.so.2", O_RDONLY) = 4
read(4, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 40\30\0\0004\0\0\0"..., 512) = 512
fstat64(4, {st_mode=S_IFREG|0755, st_size=54828, ...}) = 0
mmap2(NULL, 45712, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 4, 0) = 0x111000
mmap2(0x11b000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 4, 0xa) = 0x11b000
close(4) = 0
mprotect(0x11b000, 4096, PROT_READ) = 0
open("/etc/passwd", O_RDONLY|0x80000 /* O_??? */) = 4
fcntl64(4, F_GETFD) = 0x1 (flags FD_CLOEXEC)
fstat64(4, {st_mode=S_IFREG|0644, st_size=1918, ...}) = 0
mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb6d51000
read(4, "root:x:0:0:root:/root:/bin/bash\n"..., 4096) = 1918
close(4) = 0
munmap(0xb6d51000, 4096) = 0
getcwd("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt", 255) = 69
getppid() = 25609
getpgrp() = 25609
getcwd("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt", 255) = 69
write(1, "Case : /home/user/OpenFOA"..., 78Case : /home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt
) = 78
write(1, "nProcs : 1\n", 11nProcs : 1
) = 11
rt_sigaction(SIGFPE, {0xb74bd220, [], SA_NOMASK}, {SIG_DFL}, 8) = 0
rt_sigaction(SIGINT, {0xb74bf2a0, [], SA_NOMASK}, {SIG_DFL}, 8) = 0
rt_sigaction(SIGQUIT, {0xb74bf680, [], SA_NOMASK}, {SIG_DFL}, 8) = 0
rt_sigaction(SIGSEGV, {0xb74beeb0, [], SA_NOMASK}, {SIG_DFL}, 8) = 0
write(1, "\n", 1
) = 1
write(1, "// * * * * * * * * * * * * * * *"..., 80// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
) = 80
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin", {st_mode=S_IFDIR|0755, st_size=4096, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt", {st_mode=S_IFDIR|0750, st_size=12288, ...}) = 0
write(1, "Create time\n", 12Create time
) = 12
write(1, "\n", 1
) = 1
time(NULL) = 1220351549
times({tms_utime=24, tms_stime=5, tms_cutime=0, tms_cstime=0}) = 558148284
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/system/c ontrolDict", 0xbf97cdc4) = -1 ENOENT (No such file or directory)
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/system/c ontrolDict.gz", 0xbf97cdc4) = -1 ENOENT (No such file or directory)
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/system", 0xbf97cdf4) = -1 ENOENT (No such file or directory)
open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt", O_RDONLY|O_NONBLOCK|O_LARGEFILE|O_DIRECTORY|0x8000 0) = 4
fstat64(4, {st_mode=S_IFDIR|0750, st_size=12288, ...}) = 0
fcntl64(4, F_GETFD) = 0x1 (flags FD_CLOEXEC)
getdents(4, /* 153 entries */, 4096) = 4084
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/subsetMe sh", {st_mode=S_IFREG|0775, st_size=1037469, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/molConfi g", {st_mode=S_IFREG|0775, st_size=103337, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/flattenM esh", {st_mode=S_IFREG|0775, st_size=42625, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/rhoPimpl eFoam", {st_mode=S_IFREG|0775, st_size=501106, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/lesCavit atingFoam", {st_mode=S_IFREG|0775, st_size=810876, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/wallGrad U", {st_mode=S_IFREG|0775, st_size=114253, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/mergeMes hes", {st_mode=S_IFREG|0775, st_size=80454, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/foamToEn sightParts", {st_mode=S_IFREG|0775, st_size=478454, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/surfaceT oPatch", {st_mode=S_IFREG|0775, st_size=61049, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/patchInt egrate", {st_mode=S_IFREG|0775, st_size=149773, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/PDRFoam" , {st_mode=S_IFREG|0775, st_size=1413336, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/rhoSimpl eFoam", {st_mode=S_IFREG|0775, st_size=470034, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/insideCe lls", {st_mode=S_IFREG|0775, st_size=24585, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/splitCel ls", {st_mode=S_IFREG|0775, st_size=69648, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/surfaceC oarsen", {st_mode=S_IFREG|0775, st_size=64313, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/momentSc alarError", {st_mode=S_IFREG|0775, st_size=401656, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/nonNewto nianIcoFoam", {st_mode=S_IFREG|0775, st_size=429898, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/surfaceC onvert", {st_mode=S_IFREG|0775, st_size=23431, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/plot3dTo Foam", {st_mode=S_IFREG|0775, st_size=53279, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/foamToFi eldview9", {st_mode=S_IFREG|0775, st_size=454568, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/enstroph y", {st_mode=S_IFREG|0775, st_size=283835, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/tetgenTo Foam", {st_mode=S_IFREG|0775, st_size=58406, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/stressCo mponents", {st_mode=S_IFREG|0775, st_size=400764, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/rhoPorou sSimpleFoam", {st_mode=S_IFREG|0775, st_size=580651, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/netgenNe utralToFoam", {st_mode=S_IFREG|0775, st_size=44938, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/splitMes hRegions", {st_mode=S_IFREG|0775, st_size=1002549, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/twoLiqui dMixingFoam", {st_mode=S_IFREG|0775, st_size=741090, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/Lambda2" , {st_mode=S_IFREG|0775, st_size=361430, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/moveDyna micMesh", {st_mode=S_IFREG|0775, st_size=17227, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/settling Foam", {st_mode=S_IFREG|0775, st_size=876824, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/compress ibleLesInterFoam", {st_mode=S_IFREG|0775, st_size=818388, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/checkMes h", {st_mode=S_IFREG|0775, st_size=121348, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/foamToEn sight", {st_mode=S_IFREG|0775, st_size=677414, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/writeMes hObj", {st_mode=S_IFREG|0775, st_size=79346, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/decompos ePar", {st_mode=S_IFREG|0775, st_size=1271300, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/surfaceR efineRedGreen", {st_mode=S_IFREG|0775, st_size=23409, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/refineme ntLevel", {st_mode=S_IFREG|0775, st_size=135846, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/foamForm atConvert", {st_mode=S_IFREG|0775, st_size=80315, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/chtMulti RegionFoam", {st_mode=S_IFREG|0775, st_size=684539, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/extrude2 DMesh", {st_mode=S_IFREG|0775, st_size=55690, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/financia lFoam", {st_mode=S_IFREG|0775, st_size=342290, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/interFoa m", {st_mode=S_IFREG|0775, st_size=696668, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/refineHe xMesh", {st_mode=S_IFREG|0775, st_size=753440, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoMomen tError", {st_mode=S_IFREG|0775, st_size=482710, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/setField s", {st_mode=S_IFREG|0775, st_size=412858, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/setsToZo nes", {st_mode=S_IFREG|0775, st_size=59374, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/polyDual Mesh", {st_mode=S_IFREG|0775, st_size=32966, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/gmshToFo am", {st_mode=S_IFREG|0775, st_size=103042, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/solidEqu ilibriumDisplacementFoam", {st_mode=S_IFREG|0775, st_size=654818, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/probeLoc ations", {st_mode=S_IFREG|0775, st_size=27683, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/foamToSt arMesh", {st_mode=S_IFREG|0775, st_size=44466, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/ansysToF oam", {st_mode=S_IFREG|0775, st_size=106075, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/twoPhase EulerFoam", {st_mode=S_IFREG|0775, st_size=1038023, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/rasCavit atingFoam", {st_mode=S_IFREG|0775, st_size=655283, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/Co", {st_mode=S_IFREG|0775, st_size=182629, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/buoyantS impleRadiationFoam", {st_mode=S_IFREG|0775, st_size=500626, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/oodles", {st_mode=S_IFREG|0775, st_size=420374, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/attachMe sh", {st_mode=S_IFREG|0775, st_size=25383, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/sonicTur bFoam", {st_mode=S_IFREG|0775, st_size=474849, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/turbFoam ", {st_mode=S_IFREG|0775, st_size=420314, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/engineSw irl", {st_mode=S_IFREG|0775, st_size=114690, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/transfor mPoints", {st_mode=S_IFREG|0775, st_size=696672, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/pdfPlot" , {st_mode=S_IFREG|0775, st_size=19046, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/mshToFoa m", {st_mode=S_IFREG|0775, st_size=31613, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/scalarTr ansportFoam", {st_mode=S_IFREG|0775, st_size=323068, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/redistri buteMeshPar", {st_mode=S_IFREG|0775, st_size=873997, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/renumber Mesh", {st_mode=S_IFREG|0775, st_size=726971, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/rhoSonic Foam", {st_mode=S_IFREG|0775, st_size=411784, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/interPha seChangeFoam", {st_mode=S_IFREG|0775, st_size=965533, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/autoPatc h", {st_mode=S_IFREG|0775, st_size=63198, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/vorticit y", {st_mode=S_IFREG|0775, st_size=282629, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/mergeOrS plitBaffles", {st_mode=S_IFREG|0775, st_size=735566, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/buoyantF oam", {st_mode=S_IFREG|0775, st_size=515293, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/coldEngi neFoam", {st_mode=S_IFREG|0775, st_size=497020, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/sonicLiq uidFoam", {st_mode=S_IFREG|0775, st_size=483356, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/refineWa llLayer", {st_mode=S_IFREG|0775, st_size=71319, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/coodles" , {st_mode=S_IFREG|0775, st_size=479299, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/extrudeM esh", {st_mode=S_IFREG|0775, st_size=147666, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/yPlusLES ", {st_mode=S_IFREG|0775, st_size=291233, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/Q", {st_mode=S_IFREG|0775, st_size=283713, ...}) = 0
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/dnsFoam" , {st_mode=S_IFREG|0775, st_size=522006, ...}) = 0
write(2, "fileName::stripInvalid() called "..., 53fileName::stripInvalid() called for invalid fileName ) = 53
write(2, "libfiniteVolume.so", 18libfiniteVolume.so) = 18
write(2, "\n", 1
) = 1
write(2, " For debug level (= ", 23 For debug level (= ) = 23
write(2, "2", 12) = 1
write(2, ") > 1 this is considered fatal", 30) > 1 this is considered fatal) = 30
write(2, "\n", 1
) = 1
rt_sigprocmask(SIG_UNBLOCK, [ABRT], NULL, 8) = 0
tgkill(25610, 25610, SIGABRT) = 0
--- SIGABRT (Aborted) @ 0 (0) ---
+++ killed by SIGABRT +++

Note: An error has appeared on this system (that perhaps I did not see before). fileName::stripInvalid() called for invalid fileName libfiniteVolume.so
For debug level (= 2) > 1 this is considered fatal
Aborted




One the remote system, I receive `strace icoFoam-static`:


execve("./icoFoam-static", ["./icoFoam-static"], [/* 45 vars */]) = 0
readlink("/proc/self/exe", "/home/user/Desktop/icoFoam-static", 4096) = 34
uname({sys="Linux", node="locahost2", ...}) = 0
open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3
fstat64(3, {st_mode=S_IFREG|0775, st_size=28475548, ...}) = 0
old_mmap(NULL, 16384, PROT_READ, MAP_PRIVATE, 3, 0xd000) = 0xb7f9d000
close(3) = 0
open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3
lseek(3, 22077440, SEEK_SET) = 22077440
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\2\0\3\0\1\0\0\0\3 20\220\5\0104\0\0\0"..., 512) = 512
open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 4
lseek(4, 69632, SEEK_SET) = 69632
read(4, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\000 08\210\0004\0\0\0"..., 512) = 512
readlink("/proc/self/exe", "/home/user/Desktop/icoFoam-static", 4096) = 34
lseek(3, -512, SEEK_CUR) = 22077440
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\2\0\3\0\1\0\0\0\3 20\220\5\0104\0\0\0"..., 512, 22077440) = 512
old_mmap(0x8048000, 368640, PROT_READ, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x8048000
old_mmap(0x8048000, 364544, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x8048000
lseek(3, 22077440, SEEK_SET) = 22077440
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\2\0\3\0\1\0\0\0\3 20\220\5\0104\0\0\0"..., 364544, 22077440) = 364544
mprotect(0x8048000, 364544, PROT_READ|PROT_EXEC) = 0
old_mmap(0x80a1000, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED, 3, 0x1566000) = 0x80a1000
close(3) = 0
lseek(4, -512, SEEK_CUR) = 69632
pread64(4, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\000 08\210\0004\0\0\0"..., 512, 69632) = 512
old_mmap(0x883000, 122880, PROT_READ, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x883000
old_mmap(0x883000, 114688, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x883000
lseek(4, 69632, SEEK_SET) = 69632
pread64(4, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\000 08\210\0004\0\0\0"..., 114688, 69632) = 114688
mprotect(0x883000, 114688, PROT_READ|PROT_EXEC) = 0
old_mmap(0x89f000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED, 4, 0x2d000) = 0x89f000
close(4) = 0
brk(0) = 0x119cb000
mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb7f9c000
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/tls", 0xbfa9d680) = -1 ENOENT (No such file or directory)
open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3
lseek(3, 6942720, SEEK_SET) = 6942720
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0`\ 207#\0004\0\0\0"..., 512) = 512
mmap2(NULL, 10675996, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x69f) = 0xb756d000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0`\ 207#\0004\0\0\0"..., 10675996, 6942720) = 10675996
mprotect(0xb756d000, 10531003, PROT_READ|PROT_EXEC) = 0
mmap2(0xb7f79000, 131072, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x10aa) = 0xb7f79000
mmap2(0xb7f99000, 10012, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xb7f99000
close(3) = 0
open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3
lseek(3, 2469888, SEEK_SET) = 2469888
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0P\ 20\f\0004\0\0\0"..., 512) = 512
mmap2(NULL, 3829360, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x25b) = 0xb71c6000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0P\ 20\f\0004\0\0\0"..., 3829360, 2469888) = 3829360
mprotect(0xb71c6000, 3758785, PROT_READ|PROT_EXEC) = 0
mmap2(0xb755c000, 53248, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x5f0) = 0xb755c000
mmap2(0xb7569000, 15984, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xb7569000
close(3) = 0
stat64("/home/user/OpenFOAM/ThirdParty/gcc-4.3.1/platforms/linux/lib/tls", 0xbfa9d648) = -1 ENOENT (No such file or directory)
stat64("/home/user/OpenFOAM/ThirdParty/gcc-4.3.1/platforms/linux/lib", 0xbfa9d648) = -1 ENOENT (No such file or directory)
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/openmpi-1.2.6/tls", 0xbfa9d648) = -1 ENOENT (No such file or directory)
stat64("/home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/openmpi-1.2.6", 0xbfa9d648) = -1 ENOENT (No such file or directory)
stat64("/home/user/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOpt/lib /tls", 0xbfa9d648) = -1 ENOENT (No such file or directory)
stat64("/home/user/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOpt/lib ", 0xbfa9d648) = -1 ENOENT (No such file or directory)
stat64("/lib/tls", {st_mode=S_IFDIR|0755, st_size=4096, ...}) = 0
open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3
lseek(3, 1970176, SEEK_SET) = 1970176
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0`\ 232\243\0004\0\0\0"..., 512) = 512
mmap2(0xa39000, 16500, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x1e1) = 0xa39000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0`\ 232\243\0004\0\0\0"..., 16500, 1970176) = 16500
mprotect(0xa39000, 8364, PROT_READ|PROT_EXEC) = 0
mmap2(0xa3c000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x1e3) = 0xa3c000
close(3) = 0
open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3
lseek(3, 22835200, SEEK_SET) = 22835200
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 00\352\3\0004\0\0\0"..., 512) = 512
mmap2(NULL, 952504, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x15c7) = 0xb70dd000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 00\352\3\0004\0\0\0"..., 952504, 22835200) = 952504
mprotect(0xb70dd000, 905520, PROT_READ|PROT_EXEC) = 0
mmap2(0xb71bb000, 20480, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x16a4) = 0xb71bb000
mmap2(0xb71c0000, 22712, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xb71c0000
close(3) = 0
open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3
lseek(3, 1990656, SEEK_SET) = 1990656
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0 \0 \24\241\0004\0\0\0"..., 512) = 512
mmap2(0xa0e000, 163952, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x1e6) = 0xa0e000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0 \0 \24\241\0004\0\0\0"..., 163952, 1990656) = 163952
mprotect(0xa0e000, 156364, PROT_READ|PROT_EXEC) = 0
mmap2(0xa35000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x20c) = 0xa35000
close(3) = 0
open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3
lseek(3, 22556672, SEEK_SET) = 22556672
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 40\30\0\0004\0\0\0"..., 512) = 512
mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb70dc000
mmap2(NULL, 51528, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x1583) = 0xb70cf000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 40\30\0\0004\0\0\0"..., 51528, 22556672) = 51528
mprotect(0xb70cf000, 46644, PROT_READ|PROT_EXEC) = 0
mmap2(0xb70db000, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x158e) = 0xb70db000
close(3) = 0
open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3
lseek(3, 2318336, SEEK_SET) = 2318336
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 0(\246\0004\0\0\0"..., 512) = 512
mmap2(0xa5e000, 98784, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x236) = 0xa5e000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 0(\246\0004\0\0\0"..., 98784, 2318336) = 98784
mprotect(0xa5e000, 85088, PROT_READ|PROT_EXEC) = 0
mmap2(0xa73000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x24a) = 0xa73000
mmap2(0xa75000, 4576, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xa75000
close(3) = 0
open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3
lseek(3, 208896, SEEK_SET) = 208896
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0@\ 227\213\0004\0\0\0"..., 512) = 512
mmap2(0x8a3000, 1476176, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x33) = 0x8a3000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0@\ 227\213\0004\0\0\0"..., 1476176, 208896) = 1476176
mprotect(0x8a3000, 1453240, PROT_READ|PROT_EXEC) = 0
mmap2(0xa06000, 12288, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x196) = 0xa06000
mmap2(0xa09000, 9808, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xa09000
close(3) = 0
open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3
lseek(3, 22511616, SEEK_SET) = 22511616
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 60*\0\0004\0\0\0"..., 512) = 512
mmap2(NULL, 38236, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x1578) = 0xb70c5000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 60*\0\0004\0\0\0"..., 38236, 22511616) = 38236
mprotect(0xb70c5000, 33018, PROT_READ|PROT_EXEC) = 0
mmap2(0xb70ce000, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x1580) = 0xb70ce000
close(3) = 0
open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3
lseek(3, 21483520, SEEK_SET) = 21483520
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 60\334\0\0004\0\0\0"..., 512) = 512
mmap2(NULL, 454972, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x147d) = 0xb7055000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 60\334\0\0004\0\0\0"..., 454972, 21483520) = 454972
mprotect(0xb7055000, 450554, PROT_READ|PROT_EXEC) = 0
mmap2(0xb70c3000, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x14eb) = 0xb70c3000
mmap2(0xb70c4000, 316, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xb70c4000
close(3) = 0
open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3
lseek(3, 19566592, SEEK_SET) = 19566592
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\0 f\4\0004\0\0\0"..., 512) = 512
mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb7054000
mmap2(NULL, 1680608, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x12a9) = 0xb6eb9000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\0 f\4\0004\0\0\0"..., 1680608, 19566592) = 1680608
mprotect(0xb6eb9000, 1661926, PROT_READ|PROT_EXEC) = 0
mmap2(0xb704f000, 16384, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x143f) = 0xb704f000
mmap2(0xb7053000, 1248, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xb7053000
close(3) = 0
open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3
lseek(3, 21987328, SEEK_SET) = 21987328
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0 \0 \26\0\0004\0\0\0"..., 512) = 512
mmap2(NULL, 78564, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x14f8) = 0xb6ea5000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0 \0 \26\0\0004\0\0\0"..., 78564, 21987328) = 78564
mprotect(0xb6ea5000, 77700, PROT_READ|PROT_EXEC) = 0
mmap2(0xb6eb8000, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x150b) = 0xb6eb8000
close(3) = 0
open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3
lseek(3, 27205632, SEEK_SET) = 27205632
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 20*\1\0004\0\0\0"..., 512) = 512
mmap2(NULL, 510168, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x19f2) = 0xb6e28000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 20*\1\0004\0\0\0"..., 510168, 27205632) = 510168
mprotect(0xb6e28000, 452196, PROT_READ|PROT_EXEC) = 0
mmap2(0xb6e97000, 32768, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x1a60) = 0xb6e97000
mmap2(0xb6e9f000, 22744, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xb6e9f000
close(3) = 0
open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3
lseek(3, 19533824, SEEK_SET) = 19533824
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 40\"\0\0004\0\0\0"..., 512) = 512
mmap2(NULL, 21320, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x12a1) = 0xb6e22000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 40\"\0\0004\0\0\0"..., 21320, 19533824) = 21320
mprotect(0xb6e22000, 20208, PROT_READ|PROT_EXEC) = 0
mmap2(0xb6e27000, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x12a6) = 0xb6e27000
close(3) = 0
open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3
lseek(3, 28073984, SEEK_SET) = 28073984
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 20\334\0\0004\0\0\0"..., 512) = 512
mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb6e21000
mmap2(NULL, 339872, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x1ac6) = 0xb6dce000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 20\334\0\0004\0\0\0"..., 339872, 28073984) = 339872
mprotect(0xb6dce000, 327544, PROT_READ|PROT_EXEC) = 0
mmap2(0xb6e1e000, 12288, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x1b16) = 0xb6e1e000
close(3) = 0
open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3
lseek(3, 27803648, SEEK_SET) = 27803648
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 20\233\0\0004\0\0\0"..., 512) = 512
mmap2(NULL, 362688, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x1a84) = 0xb6d75000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 20\233\0\0004\0\0\0"..., 362688, 27803648) = 362688
mprotect(0xb6d75000, 213688, PROT_READ|PROT_EXEC) = 0
mmap2(0xb6daa000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x1ab8) = 0xb6daa000
mmap2(0xb6dac000, 137408, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xb6dac000
close(3) = 0
open("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOpt/ lib/tls/i386/libnsl.so.1", O_RDONLY) = -1 ENOENT (No such file or directory)
stat64("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOp t/lib/tls/i386", 0xbfa9cdc4) = -1 ENOENT (No such file or directory)
open("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOpt/ lib/tls/libnsl.so.1", O_RDONLY) = -1 ENOENT (No such file or directory)
stat64("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOp t/lib/tls", 0xbfa9cdc4) = -1 ENOENT (No such file or directory)
open("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOpt/ lib/i386/libnsl.so.1", O_RDONLY) = -1 ENOENT (No such file or directory)
stat64("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOp t/lib/i386", 0xbfa9cdc4) = -1 ENOENT (No such file or directory)
open("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOpt/ lib/libnsl.so.1", O_RDONLY) = -1 ENOENT (No such file or directory)
stat64("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOp t/lib", 0xbfa9cdc4) = -1 ENOENT (No such file or directory)
open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3
lseek(3, 2203648, SEEK_SET) = 2203648
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\000 0\321|\0004\0\0\0"..., 512) = 512
mmap2(0x7ca000, 104392, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x21a) = 0x7ca000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\000 0\321|\0004\0\0\0"..., 104392, 2203648) = 104392
mprotect(0x7ca000, 87276, PROT_READ|PROT_EXEC) = 0
mmap2(0x7e0000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x22f) = 0x7e0000
mmap2(0x7e2000, 6088, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x7e2000
close(3) = 0
open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3
lseek(3, 2453504, SEEK_SET) = 2453504
read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0 \0 \332J\0074\0\0\0"..., 512) = 512
mmap2(0x74ad000, 12420, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x257) = 0x74ad000
pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0 \0 \332J\0074\0\0\0"..., 12420, 2453504) = 12420
mprotect(0x74ad000, 6148, PROT_READ|PROT_EXEC) = 0
mmap2(0x74af000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x258) = 0x74af000
close(3) = 0
mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb6d74000
mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb6d73000
set_thread_area({entry_number:-1 -> 6, base_addr:0xb6d738e0, limit:1048575, seg_32bit:1, contents:0, read_exec_only:0, limit_in_pages:1, seg_not_present:0, useable:1}) = 0
mprotect(0x74af000, 4096, PROT_READ) = 0
mprotect(0x7e0000, 4096, PROT_READ) = 0
mprotect(0xb6daa000, 4096, PROT_READ) = 0
mprotect(0xb6e1e000, 4096, PROT_READ) = 0
mprotect(0xb6e97000, 4096, PROT_READ) = 0
mprotect(0xa06000, 8192, PROT_READ) = 0
mprotect(0xa73000, 4096, PROT_READ) = 0
mprotect(0xa35000, 4096, PROT_READ) = 0
mprotect(0xb71bb000, 16384, PROT_READ) = 0
mprotect(0xa3c000, 4096, PROT_READ) = 0
mprotect(0x89f000, 4096, PROT_READ) = 0
set_tid_address(0xb6d73928) = 27214
set_robust_list(0xb6d73930, 0xc) = 0
futex(0xbfa9ddd0, FUTEX_WAKE_PRIVATE, 1) = 0
rt_sigaction(SIGRTMIN, {0xa622c0, [], SA_SIGINFO}, NULL, 8) = 0
rt_sigaction(SIGRT_1, {0xa62700, [], SA_RESTART|SA_SIGINFO}, NULL, 8) = 0
rt_sigprocmask(SIG_UNBLOCK, [RTMIN RT_1], NULL, 8) = 0
getrlimit(RLIMIT_STACK, {rlim_cur=10240*1024, rlim_max=RLIM_INFINITY}) = 0
uname({sys="Linux", node="locahost2", ...}) = 0
futex(0xb71c06dc, FUTEX_WAKE_PRIVATE, 2147483647) = 0
futex(0xb71c5848, FUTEX_WAKE_PRIVATE, 2147483647) = 0
futex(0xb71c5868, FUTEX_WAKE_PRIVATE, 2147483647) = 0
brk(0) = 0x119cb000
brk(0x119ec000) = 0x119ec000
stat64("/root/.OpenFOAM", 0xbfa9da74) = -1 ENOENT (No such file or directory)
--- SIGSEGV (Segmentation fault) @ 0 (0) ---
+++ killed by SIGSEGV +++



Once again, thank you all for your help. This is way beyond my level of expertise.
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Old   September 2, 2008, 15:07
Default When packaging executable you
  #18
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Valery Reznic
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When packaging executable you can try to add flag --with-nss='internal' and when you run packed executable run it with LD_LIBRARY_PATH unset, i.e something like
env -uLD_LIBRARY_PATH your_program.ermine
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Old   September 2, 2008, 16:21
Default On the local computer, I ran
  #19
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David Herzfeld
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On the local computer, I ran

./ErmineLight.i386 icoFoam -ld_library_path=$LD_LIBRARY_PATH --with-nss='internal' --output=icoFoam-static

I then ran:
env -u LD_LIBRARY_PATH icoFoam-static

All features here work correctly.

Running the same command on the remote computer once again results in a segmentation fault.
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Old   September 2, 2008, 16:55
Default OF needs a global startup file
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Mattijs Janssens
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OF needs a global startup file, controlDict. Copy $WM_PROJECT_DIR/etc to the directory of the user on the remote machine such that the user has a ~/.OpenFOAM/1.5/controlDict.
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