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Compiling errors for OpenFOAM 13

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Old   October 4, 2006, 01:33
Default I have no idea of what happene
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Jinyu Zhu
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I have no idea of what happened. Can anybody figure it out for me? Thank you.

/home/jimo/OpenFOAM/OpenFOAM-1.3/wmake/bashScripts/mkObjectDir /home/jimo/OpenFOAM/OpenFOAM-1.3/applications/bin/linuxGcc4DPOpt/scalarTransport Foam
g++ -m32 -Dlinux -DDP -Wall -W -Wno-unused-parameter -Wold-style-cast -O3 -DNoRepository -ftemplate-depth-30 -I/home/jimo/OpenFOAM/OpenFOAM-1.3/src/finiteVolume/lnInclude -I/home/jimo/OpenFOAM/OpenFOAM-1.3/src/OpenFOAM/lnInclude -IlnInclude -I. -fPIC -pthread Make/linuxGcc4DPOpt/scalarTransportFoam.o -L/home/jimo/OpenFOAM/OpenFOAM-1.3/lib/linuxGcc4DPOpt \
-lfiniteVolume -lOpenFOAM -liberty -o /home/jimo/OpenFOAM/OpenFOAM-1.3/applications/bin/linuxGcc4DPOpt/scalarTransport Foam
/home/jimo/OpenFOAM/linux/binutils-2.16.1/bin/ld: warning: libPstream.so, needed by /home/jimo/OpenFOAM/OpenFOAM-1.3/lib/linuxGcc4DPOpt/libOpenFOAM.so, not found (try using -rpath or -rpath-link)
Make/linuxGcc4DPOpt/scalarTransportFoam.o: In function `void Foam::Pstream::scatter<double>(Foam::List<foam::ps tream::commsstruct> const&, double&)':
scalarTransportFoam.C.text._ZN4Foam7Pstream7scatterIdEEvRKNS_4ListINS0_ 11commsStructEEERT_[void Foam::Pstream::scatter<double>(Foam::List<foam::ps tream::commsstruct> const&, double&)]+0x9c): undefined reference to `Foam::IPstream::IPstream(int, int, Foam::IOstream::streamFormat, Foam::IOstream::versionNumber)'
scalarTransportFoam.C.text._ZN4Foam7Pstream7scatterIdEEvRKNS_4ListINS0_ 11commsStructEEERT_[void Foam::Pstream::scatter<double>(Foam::List<foam::ps tream::commsstruct> const&, double&)]+0x155): undefined reference to `Foam:Pstream::~OPstream()'
scalarTransportFoam.C.text._ZN4Foam7Pstream7scatterIdEEvRKNS_4ListINS0_ 11commsStructEEERT_[void Foam::Pstream::scatter<double>(Foam::List<foam::ps tream::commsstruct> const&, double&)]+0x191): undefined reference to `Foam:Pstream::~OPstream()'
Make/linuxGcc4DPOpt/scalarTransportFoam.o: In function `void Foam::Pstream::gather<double,> >(Foam::List<foam::pstream::commsstruct> const&, double&, Foam::maxOp<double> const&)':
scalarTransportFoam.C.text._ZN4Foam7Pstream6gatherIdNS_5maxOpIdEEEEvRKN S_4ListINS0_11commsStructEEERT _RKT0_[void Foam::Pstream::gather<double,> >(Foam::List<foam::pstream::commsstruct> const&, double&, Foam::maxOp<double> const&)]+0xcf): undefined reference to `Foam::IPstream::IPstream(int, int, Foam::IOstream::streamFormat, Foam::IOstream::versionNumber)'
scalarTransportFoam.C.text._ZN4Foam7Pstream6gatherIdNS_5maxOpIdEEEEvRKN S_4ListINS0_11commsStructEEERT _RKT0_[void Foam::Pstream::gather<double,> >(Foam::List<foam::pstream::commsstruct> const&, double&, Foam::maxOp<double> const&)]+0x18e): undefined reference to `Foam:Pstream::~OPstream()'
scalarTransportFoam.C.text._ZN4Foam7Pstream6gatherIdNS_5maxOpIdEEEEvRKN S_4ListINS0_11commsStructEEERT _RKT0_[void Foam::Pstream::gather<double,> >(Foam::List<foam::pstream::commsstruct> const&, double&, Foam::maxOp<double> const&)]+0x1a3): undefined reference to `Foam:Pstream::~OPstream()'
Make/linuxGcc4DPOpt/scalarTransportFoam.o: In function `Foam::dimensioned<double> Foam::sum<double,>(Foam::GeometricField<double,> const&)':
scalarTransportFoam.C.text._ZN4Foam3sumIdNS_12fvPatchFieldENS_11surface MeshEEENS_11dimensionedIT_EERK NS_14GeometricFieldIS4_T0_T1_EE[Foam::dimensioned<double> Foam::sum<double,>(Foam::GeometricField<double,> const&)]+0x59): undefined reference to `Foam::reduce(double&, Foam::sumOp<double> const&)'
/home/jimo/OpenFOAM/OpenFOAM-1.3/lib/linuxGcc4DPOpt/libOpenFOAM.so: undefined reference to `vtable for Foam:Pstream'
/home/jimo/OpenFOAM/OpenFOAM-1.3/lib/linuxGcc4DPOpt/libfiniteVolume.so: undefined reference to `Foam::IPstream::read(int, char*, int)'
/home/jimo/OpenFOAM/OpenFOAM-1.3/lib/linuxGcc4DPOpt/libOpenFOAM.so: undefined reference to `Foam::Pstream::exit(int)'
/home/jimo/OpenFOAM/OpenFOAM-1.3/lib/linuxGcc4DPOpt/libOpenFOAM.so: undefined reference to `Foam::Pstream::addValidParOptions(Foam::HashTable <foam::string,>&)'
/home/jimo/OpenFOAM/OpenFOAM-1.3/lib/linuxGcc4DPOpt/libOpenFOAM.so: undefined reference to `Foam::Pstream::init(int&, char**&)'
/home/jimo/OpenFOAM/OpenFOAM-1.3/lib/linuxGcc4DPOpt/libOpenFOAM.so: undefined reference to `Foam::Pstream::abort()'
/home/jimo/OpenFOAM/OpenFOAM-1.3/lib/linuxGcc4DPOpt/libfiniteVolume.so: undefined reference to `Foam:Pstream::write(int, char const*, int, bool)'
collect2: ld returned 1 exit status
make: *** [/home/jimo/OpenFOAM/OpenFOAM-1.3/applications/bin/linuxGcc4DPOpt/scalarTranspor tFoam] Error 1
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Old   October 4, 2006, 03:30
Default Do an ldd $FOAM_LIBBIN/lib
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Mattijs Janssens
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Do an

ldd $FOAM_LIBBIN/libOpenFOAM.so

and check for libPstream.so. My one is in $FOAM_LIBBIN/lam-7.1.2/libPstream.so but might be different (e.g. .../mpi/libPstream.so) for you depending on your WM_MPLIB setting in your ~/.OpenFOAM-1.3.2/bashrc.
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Old   October 4, 2006, 03:34
Default It looks like your LD_LIBRARY_
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Bernhard Gschaider
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It looks like your LD_LIBRARY_PATH is not set correctly.

May I ask how you started wmake? (in a shell, in (X)Emacs ....)
Some people here have had similar error messages: what usually happened was: they started XEmacs from their desktop-environment. XEmacs inherited the environment variables from the "desktop-process" which doesn't know about OpenFOAM. When they tried to compile in XEmacs (which is a good thing) linking failed with similar errors. If they started XEmacs from a shell that has all the environment variables set for OpenFOAM it inherits these values and all is well.

(insert the IDE of your choice instead of XEmacs, the same applies)
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Old   October 5, 2006, 00:01
Default I've solved this problem by co
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Jinyu Zhu
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I've solved this problem by compiling libOpenFOAM.so again. Thank you very much. However, I do have another error later.

SOURCE_DIR=.
SOURCE=chemkinToFoam.C ; g++ -m32 -Dlinux -DDP -Wall -W -Wno-unused-parameter -Wold-style-cast -O3 -DNoRepository -ftemplate-depth-30 -I/home/jimo/OpenFOAM/OpenFOAM-1.3/src/thermophysicalModels/specie/lnInclude -I/home/jimo/OpenFOAM/OpenFOAM-1.3/src/thermophysicalModels/combustion/lnInclude -I/home/jimo/OpenFOAM/OpenFOAM-1.3/src/OpenFOAM/lnInclude -IlnInclude -I. -fPIC -pthread -c $SOURCE -o Make/linuxGcc4DPOpt/chemkinToFoam.o
In file included from chemkinToFoam.C:31:
/home/jimo/OpenFOAM/OpenFOAM-1.3/src/thermophysicalModels/combustion/lnInclude/c hemkinReader.H:49:23: error: FlexLexer.h: No such file or directory
/home/jimo/OpenFOAM/OpenFOAM-1.3/src/thermophysicalModels/combustion/lnInclude/c hemkinReader.H:64: error: expected class-name before '{' token
make: *** [Make/linuxGcc4DPOpt/chemkinToFoam.o] Error 1

I searched FlexLexer.h but didn't find it. I guess I have other errors earlier to cause this problem.
How can I check all the errors after the
compilation? Is there any log file to read?

Thanks.
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