Errors in allwmake

kumar2 · February 8, 2006, 01:01

Hi all
I am getting the following errors when i Allwmake

For example when Allwmake makes bubbleFoam.C it looks for the file crtl.o in /usr/bin/ld , but cannot find this files. So it exits with Error. This happens for almost all .C solvers but the missing files and locations are different.

Please somebody help me !! This is the 2nd week of my installation !!!

mattijs · February 8, 2006, 04:35

- Why are you doing an Allwmake? The binaries should run out of the box (if you're on Linux)

- Did you install all the OS development tools?

- Do 'which gcc'. Are you running the one you downloaded from OpenFOAM?

kumar2 · February 8, 2006, 14:41

Hi Mattijis,

Thanks a lot for your reply.

I am installing the code on a RH AS3 64bit Xeon dell cluster.

1. I first tried with just the binary ( and all other files which are the gcc4.0.1 , java & paraview , downloaded from OpenFOAM site) but there were 2 critical errors in the foamInstallationTest . Both the errors were related to the path of the gcc & java compilers.
Then i decided to remake the code.

2. I did the Allwmake . although there were errors when i do the Allwmake , the subsequent foamInstallationTest did NOT HAVE ANY ERRORS.

3. Allwmake was done with the gcc-4.0.1 downloaded from OpenFOAM site.

But right now when say for example I call blockMesh , there is a fatal error since I have not given the <root> and <case> . Hopefully this will also go away. If it doesnot i will do a new post.

Thanks a lot once again

kumar

bernardomr · March 31, 2006, 11:40

Hi Mattijis an Kumar
I'm a new OpenFOAM user and not linux expert
I tried to install OpenFOAM-1.2 (I did the foamInstallationTest and all was Ok!) but I've the same problem like Kuman. When I did the FoamX command the system send me the next mesage:
nsd:/lib/i686/libc.so.6:version `GLIBC_2.3'not found (required by/ home/open/OpenFOAM/linux/gcc-4.0.1/lib/libstdc++.so.6)

my linux version is (so old, I think):
Red Hat Linux release 7.2 (Enigma)
Kernel 2.4.7-10 enterprise on an i686

When I downloaded OpenFoam, I downloaded the "gcc-4.0.1" also.
What I need to do to solve mi problem?
I need to recopile the gcc sources first and then run the "Allwmake" scrip in the "src" directory for recompile the OpenFoam sources. My question is How I do that? Could you advise or help me?
thanks in advance
bernardo

liu · March 31, 2006, 13:47

I also got this problem on our Unversity's cluster for v1.3:
.../libc.so.6:version `GLIBC_2.3'not found ...

On my laptop, it's ok since I updated to FC5. While on the cluster (where I have no root control), gcc's version is 3.2.1. I believe it's related to the problem. But I don't know how to solved.

I tried to recompile gcc-4.1.0 in my home directory. It seems there is no new libc.so.6.

Any thought?

bernardomr · March 31, 2006, 14:36

Thanks Xlaofeng Llo by your message

I'think that the best solution is try a new linux version like FC5 like you done.

In any case I'll test to understand how to compile gcc

thanks
merci
bernardo

kumar2 · March 31, 2006, 15:16

Hi Martinez

I was not able to install the OpenFoam on RH7.3 & 32 bit . But i finally installed on fedora & RH enterprise - both with 64 bit .

i feel RH7.3 is too old . may be you should go for a newer RH /Fedora and try 64 bit .

hope this helps

regards

kumar

liu · March 31, 2006, 17:08

After googling, I found it maybe a bad news.
The precompiled binary code is build on newer version of gnu c library. For a old linux platform, it will not work if the gnu C lib is not updated.

For the situation like me where I don't have the root control, the only way out is to recompile everything. The only concern I have is if gcc-4.1.0 will get along with the old lib already in the system.

Let's see what will happen.

bernardomr · April 3, 2006, 05:32

Hi all
Thanks a lot for yours advises.
That's true. I think to change
my RH7.32 for the new version
is the only solution (but have
an other CFD-RANScode that I can't
install in a new version so I'll
try to install OpenFOAM in another
cumputer with a new linux version).
Thank and see you
regards
bernardo

bernardomr · April 3, 2006, 05:36

Hi all
Thanks a lot for yours advises.
That's true. I think to change
my RH7.32 for the new version
is the only solution (but have
an other CFD-RANScode that I can't
install in a new version so I'll
try to install OpenFOAM in another
cumputer with a new linux version).
Thank and see you
regards
bernardo

mattijs · April 3, 2006, 08:15

Or you can download the sources for gcc-4.1.0 and recompile it yourself. Make sure you install it into the correct position under the OpenFOAM tree.

Once gcc is running use that to recompile OpenFOAM.

February 8, 2006, 01:01	Hi all I am getting the foll	#1
kumar2 Senior Member kumar Join Date: Mar 2009 Posts: 112 Rep Power: 17	Hi all I am getting the following errors when i Allwmake For example when Allwmake makes bubbleFoam.C it looks for the file crtl.o in /usr/bin/ld , but cannot find this files. So it exits with Error. This happens for almost all .C solvers but the missing files and locations are different. Please somebody help me !! This is the 2nd week of my installation !!!

February 8, 2006, 04:35	- Why are you doing an Allwmak	#2
mattijs Senior Member Mattijs Janssens Join Date: Mar 2009 Posts: 1,419 Rep Power: 26	- Why are you doing an Allwmake? The binaries should run out of the box (if you're on Linux) - Did you install all the OS development tools? - Do 'which gcc'. Are you running the one you downloaded from OpenFOAM?

February 8, 2006, 14:41	Hi Mattijis, Thanks a lot f	#3
kumar2 Senior Member kumar Join Date: Mar 2009 Posts: 112 Rep Power: 17	Hi Mattijis, Thanks a lot for your reply. I am installing the code on a RH AS3 64bit Xeon dell cluster. 1. I first tried with just the binary ( and all other files which are the gcc4.0.1 , java & paraview , downloaded from OpenFOAM site) but there were 2 critical errors in the foamInstallationTest . Both the errors were related to the path of the gcc & java compilers. Then i decided to remake the code. 2. I did the Allwmake . although there were errors when i do the Allwmake , the subsequent foamInstallationTest did NOT HAVE ANY ERRORS. 3. Allwmake was done with the gcc-4.0.1 downloaded from OpenFOAM site. But right now when say for example I call blockMesh , there is a fatal error since I have not given the <root> and <case> . Hopefully this will also go away. If it doesnot i will do a new post. Thanks a lot once again kumar

March 31, 2006, 11:40	Hi Mattijis an Kumar I'm a ne	#4
bernardomr New Member Martinez Ramirez Bernardo Join Date: Mar 2009 Location: Poitiers, Vienne, France Posts: 4 Rep Power: 17	Hi Mattijis an Kumar I'm a new OpenFOAM user and not linux expert I tried to install OpenFOAM-1.2 (I did the foamInstallationTest and all was Ok!) but I've the same problem like Kuman. When I did the FoamX command the system send me the next mesage: nsd:/lib/i686/libc.so.6:version `GLIBC_2.3'not found (required by/ home/open/OpenFOAM/linux/gcc-4.0.1/lib/libstdc++.so.6) my linux version is (so old, I think): Red Hat Linux release 7.2 (Enigma) Kernel 2.4.7-10 enterprise on an i686 When I downloaded OpenFoam, I downloaded the "gcc-4.0.1" also. What I need to do to solve mi problem? I need to recopile the gcc sources first and then run the "Allwmake" scrip in the "src" directory for recompile the OpenFoam sources. My question is How I do that? Could you advise or help me? thanks in advance bernardo

March 31, 2006, 13:47	I also got this problem on our	#5
liu Senior Member Xiaofeng Liu Join Date: Mar 2009 Location: State College, PA, USA Posts: 118 Rep Power: 17	I also got this problem on our Unversity's cluster for v1.3: .../libc.so.6:version `GLIBC_2.3'not found ... On my laptop, it's ok since I updated to FC5. While on the cluster (where I have no root control), gcc's version is 3.2.1. I believe it's related to the problem. But I don't know how to solved. I tried to recompile gcc-4.1.0 in my home directory. It seems there is no new libc.so.6. Any thought? __________________ Xiaofeng Liu, Ph.D., P.E., Assistant Professor Department of Civil and Environmental Engineering Penn State University 223B Sackett Building University Park, PA 16802 Web: http://water.engr.psu.edu/liu/

March 31, 2006, 14:36	Thanks Xlaofeng Llo by your me	#6
bernardomr New Member Martinez Ramirez Bernardo Join Date: Mar 2009 Location: Poitiers, Vienne, France Posts: 4 Rep Power: 17	Thanks Xlaofeng Llo by your message I'think that the best solution is try a new linux version like FC5 like you done. In any case I'll test to understand how to compile gcc thanks merci bernardo

March 31, 2006, 15:16	Hi Martinez I was not able	#7
kumar2 Senior Member kumar Join Date: Mar 2009 Posts: 112 Rep Power: 17	Hi Martinez I was not able to install the OpenFoam on RH7.3 & 32 bit . But i finally installed on fedora & RH enterprise - both with 64 bit . i feel RH7.3 is too old . may be you should go for a newer RH /Fedora and try 64 bit . hope this helps regards kumar

March 31, 2006, 17:08	After googling, I found it may	#8
liu Senior Member Xiaofeng Liu Join Date: Mar 2009 Location: State College, PA, USA Posts: 118 Rep Power: 17	After googling, I found it maybe a bad news. The precompiled binary code is build on newer version of gnu c library. For a old linux platform, it will not work if the gnu C lib is not updated. For the situation like me where I don't have the root control, the only way out is to recompile everything. The only concern I have is if gcc-4.1.0 will get along with the old lib already in the system. Let's see what will happen. __________________ Xiaofeng Liu, Ph.D., P.E., Assistant Professor Department of Civil and Environmental Engineering Penn State University 223B Sackett Building University Park, PA 16802 Web: http://water.engr.psu.edu/liu/

April 3, 2006, 05:32	Hi all Thanks a lot for yours	#9
bernardomr New Member Martinez Ramirez Bernardo Join Date: Mar 2009 Location: Poitiers, Vienne, France Posts: 4 Rep Power: 17	Hi all Thanks a lot for yours advises. That's true. I think to change my RH7.32 for the new version is the only solution (but have an other CFD-RANScode that I can't install in a new version so I'll try to install OpenFOAM in another cumputer with a new linux version). Thank and see you regards bernardo

April 3, 2006, 05:36	Hi all Thanks a lot for yours	#10
bernardomr New Member Martinez Ramirez Bernardo Join Date: Mar 2009 Location: Poitiers, Vienne, France Posts: 4 Rep Power: 17	Hi all Thanks a lot for yours advises. That's true. I think to change my RH7.32 for the new version is the only solution (but have an other CFD-RANScode that I can't install in a new version so I'll try to install OpenFOAM in another cumputer with a new linux version). Thank and see you regards bernardo

April 3, 2006, 08:15	Or you can download the source	#11
mattijs Senior Member Mattijs Janssens Join Date: Mar 2009 Posts: 1,419 Rep Power: 26	Or you can download the sources for gcc-4.1.0 and recompile it yourself. Make sure you install it into the correct position under the OpenFOAM tree. Once gcc is running use that to recompile OpenFOAM.

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