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OpenFOAM-1.6 installation on Centos5.4 x86_64 Cluster |
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April 7, 2010, 11:58 |
OpenFOAM-1.6 installation on Centos5.4 x86_64 Cluster
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#1 |
New Member
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Hello Friends,
By quirk of fate I am now an admin on a small univ. cluster eventhough I am a newbie with Linux and Clustering. I am trying to install OpenFOAM-1.6 on the head-node of a cluster based on Centos5.4 x86_64. The directory in NSF shared. I downloaded the 2 source files named 1) OpenFOAM-1.6.General.gtgz and 2) ThirdParty-1.6.General.gtgz . I have changed the bashrc and settings file to include mpi as I am using NSF shared MPICH2. I am getting error during ./Allwmake and I have attached the log file for review. Thanks, Dhoom |
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April 8, 2010, 05:16 |
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#2 | |
Assistant Moderator
Bernhard Gschaider
Join Date: Mar 2009
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Quote:
About the second error: strange. Which g++ are you using? The one that comes with CentOS is 4.1 (which might not work with OF 1.6) BUT you can install 4.4 from the standard-repositories (but the best guess would be to use the 4.3 that comes in ThirdParty) Bernhard |
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April 8, 2010, 09:53 |
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#3 |
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Bernhard,
I will check the paths to mpio.h are correct. I am using the third party module I guess for g++ as I have not specified anywhere to use system compilers. Thanks for the feedback. |
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April 12, 2010, 02:30 |
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#4 |
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I have changed the settings.sh option to use Openfoam compilers and it seems I am getting a libPstream.so error and also errors in the Scotch package. Please find a log file attached.
hmm... where is my Johny Walker, I need it now... |
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April 12, 2010, 06:41 |
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#5 | |
Assistant Moderator
Bernhard Gschaider
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Quote:
Bernhard |
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April 14, 2010, 02:21 |
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#6 |
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any solutions?
Thanks, D |
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April 14, 2010, 12:39 |
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#7 |
Assistant Moderator
Bernhard Gschaider
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Rep Power: 51 |
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April 15, 2010, 01:31 |
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#8 |
New Member
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April 15, 2010, 04:42 |
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#9 | |
Assistant Moderator
Bernhard Gschaider
Join Date: Mar 2009
Posts: 4,225
Rep Power: 51 |
Quote:
This is the relevant section from your log: Code:
/usr/bin/ld: /usr/cluster/mpich2-1.2.1/lib/libmpich.a(allreduce.o): relocation R_X86_64_32 against `a local symbol' can not be used when making a shared object; recompile with -fPIC |
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