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-   -   OpenFOAM-1.5 for large scale compute server (http://www.cfd-online.com/Forums/openfoam-installation/76151-openfoam-1-5-large-scale-compute-server.html)

SARU May 16, 2010 08:05

OpenFOAM-1.5 for large scale compute server
 
Hi!!

Now, I try to install OpenFOAM-1.5 on large scale computer server.
but, I have one problem when I carried out ./Allwmake. It is occured such as below.

SOURCE=autoHexMesh/autoHexMeshDriver/autoRefineDriver.C ; g++ -m64 -
Dlinux64 -DDP -Wall -Wno-strict-aliasing -Wextra -Wno-unused-parameter -Wold-style-cast -march=opteron -O3 -DNoRepository -ftemplate- depth-40 -I/work/esashi/OpenFOAM/OpenFOAM-1.5/src/
decompositionAgglomeration/decompositionMethods/lnInclude -I/work/ esashi/OpenFOAM/OpenFOAM-1.5/src/dynamicMesh/lnInclude -I/work/esashi/ OpenFOAM/OpenFOAM-1.5/src/finiteVolume/lnInclude -I/work/esashi/ OpenFOAM/OpenFOAM-1.5/src/lagrangian/basic/lnInclude -I/work/esashi/ OpenFOAM/OpenFOAM-1.5/src/meshTools/lnInclude -I/work/esashi/OpenFOAM/ OpenFOAM-1.5/src/edgeMesh/lnInclude -I/work/esashi/OpenFOAM/ OpenFOAM-1.5/src/triSurface/lnInclude -IlnInclude -I. -I/work/esashi/ OpenFOAM/OpenFOAM-1.5/src/OpenFOAM/lnInclude -I/work/esashi/OpenFOAM/
OpenFOAM-1.5/src/OSspecific/Unix/lnInclude -fPIC -c $SOURCE -o Make/
linux64GccDPOpt/autoRefineDriver.o
/work/esashi/OpenFOAM/OpenFOAM-1.5/src/OpenFOAM/lnInclude/PtrList.C:
In copy constructor Foam::PtrList<T>::PtrList(const
Foam::PtrList<T>&) [with T = Foam::featureEdgeMesh]:
autoHexMesh/autoHexMeshDriver/autoRefineDriver.C:260: instantiated
from here
/work/esashi/OpenFOAM/OpenFOAM-1.5/src/OpenFOAM/lnInclude/PtrList.C:
56: error: invalid conversion from Foam::IOobject* to Foam::featureEdgeMesh*
make: *** [Make/linux64GccDPOpt/autoRefineDriver.o] error 1
+ wmake libso errorEstimation

after that, I carried out foamInstrationTest. The result represented below.

Checking basic setup...
-------------------------------------------------------------------------------
Shell: csh
Host: rsclw13
OS: Linux version 2.6.18-92.1.10.el5_lustre.1.6.6smp
-------------------------------------------------------------------------------


Checking main OpenFOAM env variables...
-------------------------------------------------------------------------------
Environment_variable Set_to_file_or_directory
Valid Crit
-------------------------------------------------------------------------------
$WM_PROJECT_INST_DIR /work/esashi/OpenFOAM
yes yes
$WM_PROJECT_USER_DIR .../research/g48012/OpenFOAM/g48012-1.5
yes no
$WM_THIRD_PARTY_DIR /work/esashi/OpenFOAM/ThirdParty
yes yes
-------------------------------------------------------------------------------


Checking the OpenFOAM env variables set on the PATH...
-------------------------------------------------------------------------------
Environment_variable Set_to_file_or_directory Valid
Path Crit
-------------------------------------------------------------------------------
$WM_PROJECT_DIR /work/esashi/OpenFOAM/OpenFOAM-1.5 yes
yes yes

$FOAM_APPBIN ...1.5/applications/bin/linux64GccDPOpt yes
yes yes
$FOAM_USER_APPBIN ...1.5/applications/bin/linux64GccDPOpt yes
yes no
$WM_DIR /work/esashi/OpenFOAM/OpenFOAM-1.5/wmake yes
yes yes
-------------------------------------------------------------------------------


Checking the OpenFOAM env variables set on the LD_LIBRARY_PATH...
-------------------------------------------------------------------------------
Environment_variable Set_to_file_or_directory Valid
Path Crit
-------------------------------------------------------------------------------
$FOAM_LIBBIN ...OAM/OpenFOAM-1.5/lib/linux64GccDPOpt yes
yes yes
$FOAM_USER_LIBBIN ...nFOAM/g48012-1.5/lib/linux64GccDPOpt yes
yes no
$MPI_ARCH_PATH ...nmpi-1.2.6/platforms/linux64GccDPOpt yes
yes yes
-------------------------------------------------------------------------------


Third party software
-------------------------------------------------------------------------------
Software Version Location
-------------------------------------------------------------------------------
WARNING: gcc version does not match gcc supplied with this release of OpenFOAM
Supplied version: 4.3.1
User version :
Minimum required: 4.2.0

gcc
WARNING: Conflicting installations:
OpenFOAM settings : /bin/gcc
current path : /usr/bin/gcc
CRITICAL ERROR

gzip 1.3.5 /bin/
gzip
tar 1.15.1 /bin/
tar
icoFoam 1.5 .../OpenFOAM-1.5/applications/bin/linux64GccDPOpt/
icoFoam
-------------------------------------------------------------------------------


Checking networking...
-------------------------------------------------------------------------------
Action Result
Crit
-------------------------------------------------------------------------------
Pinging_rsclw13 Successful
yes
Pinging_localHost Successful
yes
Test_rsh: Unsuccessful_connection_refused*
yes
Test_ssh: Successful
yes
(*) Only one of rsh or ssh is required by the OpenFOAM enviroment.

-------------------------------------------------------------------------------

Base configuration ok.

The foam installation contains 1 critical error(s).

Review the output for warning messages and consult the installation guide for trouble shooting.

done.

How can I resolve that?
If someone knows this problems, Could you tell me how to install?

Regards!!

wyldckat May 19, 2010 07:01

Greetings SARU,

Can you change from OpenFOAM 1.5 to 1.5.x? Or to 1.6 or even 1.6.x?
If not, you will have to build gcc version 4.2.x (x=1,2,3 or 4 ;)). There should be one available in the ThirdParty folder.

I say this, because the first error you have is possibly related to changes in gcc coding directives from 4.2.x to 4.3.x .
Nonetheless, OpenFOAM 1.6 and 1.6.x should build well with gcc 4.3.1, which is your system's gcc version.

As for the "Critical error" that foamInstallationTest reports, it's actually a glitch in the script, which doesn't account for the fact that system/user compilers can be placed anywhere... So that error shouldn't be much of a problem ;)

Best regards,
Bruno

PS: I didn't answer earlier, because I was hoping that someone more experienced with OpenFOAM 1.5 would step in before me...

SARU May 19, 2010 23:06

Greetings Mr. Bruno

I appreciate your responce.

Immediately, I try to change gcc version from gcc-4.1.2 to gcc 4.3.1.

Best regards
SARU


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