CFD Online Discussion Forums - libscotch-5.1.so needed for DPOpt

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libscotch-5.1.so needed for DPOpt

Hi,

I am followig the Chalmers method for installing OF2.0.x (http://www.tfd.chalmers.se/~hani/kur...OwnLaptop.html). When I come to the compilation command

Code:

./Allwmake 2>&1 | tee log_Allwmake_0

I get the following error

Code:

ake[1]: Entering directory `/home/jmatthei/OpenFOAM/OpenFOAM-2.0.x/applications/utilities/parallelProcessing'

make[2]: Entering directory `/home/jmatthei/OpenFOAM/OpenFOAM-2.0.x/applications/utilities/parallelProcessing/decomposePar'

g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-100 -I/home/jmatthei/OpenFOAM/OpenFOAM-2.0.x/src/parallel/decompose/decompositionMethods/lnInclude -I/home/jmatthei/OpenFOAM/OpenFOAM-2.0.x/src/finiteVolume/lnInclude -I/home/jmatthei/OpenFOAM/OpenFOAM-2.0.x/src/lagrangian/basic/lnInclude -I/home/jmatthei/OpenFOAM/OpenFOAM-2.0.x/src/meshTools/lnInclude -IlnInclude -I. -I/home/jmatthei/OpenFOAM/OpenFOAM-2.0.x/src/OpenFOAM/lnInclude -I/home/jmatthei/OpenFOAM/OpenFOAM-2.0.x/src/OSspecific/POSIX/lnInclude   -fPIC -Xlinker --add-needed -Xlinker --no-as-needed Make/linux64GccDPOpt/decomposePar.o Make/linux64GccDPOpt/domainDecomposition.o Make/linux64GccDPOpt/domainDecompositionMesh.o Make/linux64GccDPOpt/domainDecompositionDistribute.o Make/linux64GccDPOpt/dimFieldDecomposer.o Make/linux64GccDPOpt/fvFieldDecomposer.o Make/linux64GccDPOpt/pointFieldDecomposer.o Make/linux64GccDPOpt/lagrangianFieldDecomposer.o -L/home/jmatthei/OpenFOAM/OpenFOAM-2.0.x/platforms/linux64GccDPOpt/lib \

         -lfiniteVolume -lgenericPatchFields -ldecompositionMethods -L/home/jmatthei/OpenFOAM/OpenFOAM-2.0.x/platforms/linux64GccDPOpt/lib/dummy -lmetisDecomp -lscotchDecomp -llagrangian -lmeshTools -lOpenFOAM -ldl   -lm -o /home/jmatthei/OpenFOAM/OpenFOAM-2.0.x/platforms/linux64GccDPOpt/bin/decomposePar

/usr/bin/ld: warning: libscotch-5.1.so, needed by /home/jmatthei/OpenFOAM/OpenFOAM-2.0.x/platforms/linux64GccDPOpt/lib/libscotchDecomp.so, not found (try using -rpath or -rpath-link)

/usr/bin/ld: warning: libscotcherrexit-5.1.so, needed by /home/jmatthei/OpenFOAM/OpenFOAM-2.0.x/platforms/linux64GccDPOpt/lib/libscotchDecomp.so, not found (try using -rpath or -rpath-link)

/home/jmatthei/OpenFOAM/OpenFOAM-2.0.x/platforms/linux64GccDPOpt/lib/libscotchDecomp.so: undefined reference to `SCOTCH_stratExit'

/home/jmatthei/OpenFOAM/OpenFOAM-2.0.x/platforms/linux64GccDPOpt/lib/libscotchDecomp.so: undefined reference to `SCOTCH_graphCheck'

/home/jmatthei/OpenFOAM/OpenFOAM-2.0.x/platforms/linux64GccDPOpt/lib/libscotchDecomp.so: undefined reference to `SCOTCH_archCmpltw'

/home/jmatthei/OpenFOAM/OpenFOAM-2.0.x/platforms/linux64GccDPOpt/lib/libscotchDecomp.so: undefined reference to `SCOTCH_stratInit'

/home/jmatthei/OpenFOAM/OpenFOAM-2.0.x/platforms/linux64GccDPOpt/lib/libscotchDecomp.so: undefined reference to `SCOTCH_graphBuild'

/home/jmatthei/OpenFOAM/OpenFOAM-2.0.x/platforms/linux64GccDPOpt/lib/libscotchDecomp.so: undefined reference to `SCOTCH_archInit'

/home/jmatthei/OpenFOAM/OpenFOAM-2.0.x/platforms/linux64GccDPOpt/lib/libscotchDecomp.so: undefined reference to `SCOTCH_stratGraphMap'

/home/jmatthei/OpenFOAM/OpenFOAM-2.0.x/platforms/linux64GccDPOpt/lib/libscotchDecomp.so: undefined reference to `SCOTCH_graphExit'

/home/jmatthei/OpenFOAM/OpenFOAM-2.0.x/platforms/linux64GccDPOpt/lib/libscotchDecomp.so: undefined reference to `SCOTCH_graphMap'

/home/jmatthei/OpenFOAM/OpenFOAM-2.0.x/platforms/linux64GccDPOpt/lib/libscotchDecomp.so: undefined reference to `SCOTCH_archExit'

/home/jmatthei/OpenFOAM/OpenFOAM-2.0.x/platforms/linux64GccDPOpt/lib/libscotchDecomp.so: undefined reference to `SCOTCH_archCmplt'

/home/jmatthei/OpenFOAM/OpenFOAM-2.0.x/platforms/linux64GccDPOpt/lib/libscotchDecomp.so: undefined reference to `SCOTCH_graphInit'

collect2: ld returned 1 exit status

make[2]: *** [/home/jmatthei/OpenFOAM/OpenFOAM-2.0.x/platforms/linux64GccDPOpt/bin/decomposePar] Error 1

In the directory /home/jmatthei/OpenFOAM/ThirdParty-2.0.x/platforms/linux64Gcc, I do have the folder scotch_5.1.11, but this folder is not in /home/jmatthei/OpenFOAM/ThirdParty-2.0.x/platforms/linux64GccDPOpt/
Would that be the problem and how do I solve it?

Greetings flowris,

Insufficient information... please run:

Code:

tar -czf log.tar.gz log_Allwmake_0

And attach "log.tar.gz" to your next post.

I ask this because apparently Scotch didn't build. The weird thing is why on earth is it asking for libscotch-5.1 and not plain and simple libscotch?

WAaaait, scratch that above. Those instructions are ooooooutdated as hell. Get the more recent ThirdParty package: http://downloads.sourceforge.net/pro...rty-2.0.1.gtgz
There was a dumb bug in the 2.0.0 3rdP package.

Best regards,
Bruno

Dear Bruno,

I downloaded the newer ThirdParty and compiled everything successfully. Thanks a lot!

Dear Bruno (and others),

I am now also trying 1.6-ext, and following your short tutorial (http://www.extend-project.de/user-fo...ation-openfoam). While compiling the ThirdParty, I got an error in Stage 3 at 49%:

Code:

../../../../bin/libvtkRendering.so.pv3.10: undefined reference to `glReadBuffer'

../../../../bin/libvtkRendering.so.pv3.10: undefined reference to `glTexCoord1iv'

collect2: ld returned 1 exit status

make[2]: *** [bin/GenericFilteringCxxTests] Error 1

make[1]: *** [VTK/GenericFiltering/Testing/Cxx/CMakeFiles/GenericFilteringCxxTests.dir/all] Error 2

make[1]: *** Waiting for unfinished jobs....

[ 49%] Building CXX object VTK/Parallel/CMakeFiles/vtkParallel.dir/vtkPImageWriter.cxx.o

[ 49%] Building CXX object VTK/Parallel/CMakeFiles/vtkParallel.dir/vtkPipelineSize.cxx.o

[ 49%] Building CXX object VTK/Parallel/CMakeFiles/vtkParallel.dir/vtkSynchronizedRenderers.cxx.o

[ 49%] Building CXX object VTK/Parallel/CMakeFiles/vtkParallel.dir/vtkSynchronizedRenderWindows.cxx.o

[ 49%] Building CXX object VTK/Parallel/CMakeFiles/vtkParallel.dir/vtkTreeCompositer.cxx.o

[ 49%] Building CXX object VTK/Parallel/CMakeFiles/vtkParallel.dir/vtkExodusIIWriter.cxx.o

[ 49%] Building CXX object VTK/Parallel/CMakeFiles/vtkParallel.dir/vtkCompositeZPassShader_fs.cxx.o

[ 49%] Building CXX object VTK/Parallel/CMakeFiles/vtkParallel.dir/vtkParallelInstantiator.cxx.o

Linking CXX shared library ../../bin/libvtkParallel.so

[ 49%] Built target vtkParallel

make: *** [all] Error 2

error: Bad exit status from /home/jmatthei/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/tmp/rpm-tmp.gPd7Hl (%build)





RPM build errors:

    Bad exit status from /home/jmatthei/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/tmp/rpm-tmp.gPd7Hl (%build)

Installing package: ParaView-3.10.1

  Uninstalling ParaView-3.10.1 using RPM: ParaView-3.10.1-linux64GccDPOpt.x86_64

  Installing ParaView-3.10.1 using RPM file: /home/jmatthei/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/RPMS/x86_64/ParaView-3.10.1-linux64GccDPOpt.x86_64.rpm

error: open of /home/jmatthei/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/RPMS/x86_64/ParaView-3.10.1-linux64GccDPOpt.x86_64.rpm failed: No such file or directory

Done installing package 



========================================

Done ThirdParty AllMake: Stage4

========================================



========================================

Done ThirdParty Allwmake

========================================

This one goes beyond my skills. The complete log file is attached. Any tips?

Hi flowris,

Make sure to install the packages mentioned in the section "System Requirements": http://www.openfoam.org/download/source.php#x6-27000

Best regards,
Bruno

Thanks Bruno,

I have all of these packages installed, I updated them and still the same error occurs. However, I am able to compile the main OpenFOAM-1.6-ext folder (running Allwmake).

Attached is the log file for the compilation of the ThirdParty direction. Any tips are still appreciated, because not all functionalities will work for me.

Hi flowris,

Since it's 1.6-ext, I don't know. All I know is that there is a more lengthy explanation about installing 1.6-ext here: http://www.extend-project.de/user-fo...n-openfoam#276

The other possibility is to report this on Extend's bug tracker: http://sourceforge.net/apps/mantisbt...l_bug_page.php

There is also another possibility, partially described here:

Quote:

Originally Posted by wyldckat (Post 358657)

Maybe it's best to do it the other way around: disable the ParaView version you are trying to build and then use the old one instead.

By the looks of it, it seems that you can do this:

Start a new terminal.
Do not run startOF16ext that was assigned to the deb version you had.
When building the new version of 1.6-ext, run it like this:

Code:

export PARAVIEW_SYSTEM=1 ./Allwmake

This way it will skip the step for building ParaView.

When the new version is properly built... well, for now, the easiest thing to do would be to have two terminals:

One where you have working the new 1.6-ext, perhaps in Debug mode already.
Another where you have the old deb version of 1.6-ext, from which you can run ParaView.

The idea is that the other ParaView is the one from the the deb packages provided here: http://openfoamwiki.net/index.php/In...ucid_10.04_LTS

edit: You can also try the answer I gave here: http://www.cfd-online.com/Forums/ope...tml#post358820

Best regards,
Bruno