CFD Online Logo CFD Online URL
www.cfd-online.com
[Sponsors]
Home > Forums > Software User Forums > OpenFOAM > OpenFOAM Meshing & Mesh Conversion

[blockMesh] Fatal IO error with multi-grading

Register Blogs Community New Posts Updated Threads Search

Reply
 
LinkBack Thread Tools Search this Thread Display Modes
Old   February 24, 2016, 11:45
Default Fatal IO error with multi-grading
  #1
Member
 
Sandra
Join Date: Oct 2014
Posts: 58
Rep Power: 11
sabago is on a distinguished road
Dear Foamers,

I installed OF 2.4 in order to try the multi-grading feature. I have the following as part of my blockMeshDict
Code:
blocks
(
    hex (0 1 2 3 4 5 6 7) (1 100 1) 
    simpleGrading 
    ( 
        1                  // x-direction expansion ratio 
        ( 
            (0.12 0.12 1)    // 12% y-dir, 12% cells, expansion = 1 
            (0.1 0.1 3)    // 10% y-dir, 10% cells, expansion = 3 
            (0.78 0.78 1) // 78% y-dir, 78% cells, expansion = 1 
        ) 
        1                  // z-direction expansion ratio 
    ) 

);
but when I run blockMesh, I get the error below (which disappears as soon as I eliminate the multi-grading.
Code:
--> FOAM FATAL IO ERROR: 
wrong token type - expected Scalar, found on line 38 the punctuation token '('

file: /home/sandra/OpenFOAM/sandra-2.4.0/GSOFC/constant/polyMesh/blockMeshDict.blocks at line 38.

    From function operator>>(Istream&, Scalar&)
    in file lnInclude/Scalar.C at line 93.

FOAM exiting
Any help will be much appreciated
sabago is offline   Reply With Quote

Old   February 24, 2016, 21:56
Default
  #2
Senior Member
 
Join Date: Aug 2013
Posts: 407
Rep Power: 15
Antimony is on a distinguished road
Hi,

Perhaps you could try with OF-2.4.x instead? It seems like a couple of bugs in the multi-grading from 2.4.0 were resolved in 2.4.x

http://www.openfoam.org/mantisbt/view.php?id=1809

Hope this helps.

Cheers,
Antimony
Antimony is offline   Reply With Quote

Old   February 26, 2016, 13:33
Default
  #3
Member
 
Sandra
Join Date: Oct 2014
Posts: 58
Rep Power: 11
sabago is on a distinguished road
Thank you Antimony!

I installed OF 2.4.X as well and now the multi-grading is working with the same case that wouldn't work in OF 2.4.0.

Best,
Sandra
sabago is offline   Reply With Quote

Old   February 26, 2016, 14:15
Default
  #4
Member
 
Sandra
Join Date: Oct 2014
Posts: 58
Rep Power: 11
sabago is on a distinguished road
blockMesh works fine in 2.4.x but my case stops running after a few iterations. It is the case that I have copied from 2.4.0 and it runs fine there. I have copied and recopied both the solver and case and it culminates in an error in 2.4.x

Is this a bug?

Best,
Sandra
sabago is offline   Reply With Quote

Old   February 26, 2016, 21:07
Default
  #5
Senior Member
 
Join Date: Aug 2013
Posts: 407
Rep Power: 15
Antimony is on a distinguished road
Hi,

What error message does it show? Can you post it here?

Cheers,
Antimony
Antimony is offline   Reply With Quote

Old   February 29, 2016, 10:12
Default
  #6
Member
 
Sandra
Join Date: Oct 2014
Posts: 58
Rep Power: 11
sabago is on a distinguished road
Hi Antimony,

I've pasted the error below. But a few things to note are
1. The point in the code where the error is coming from seems to be the weakest point in my code. Even errors with the fvSchemes will invoke it and whenever I modify my solvers, it's the first part to break usually
2. In this case, I don't think it's my solver or case for they work fine in 2.4.x but as soon as I add the multi grading and blockMesh, and then run my code, I get this error after about 10 iterations.
Code:
here07
here09
#0  Foam::error::printStack(Foam::Ostream&) at ??:?
#1  Foam::sigFpe::sigHandler(int) at ??:?
#2  ? in "/lib/x86_64-linux-gnu/libc.so.6"
#3  ? in "/lib/x86_64-linux-gnu/libm.so.6"
#4  exp in "/lib/x86_64-linux-gnu/libm.so.6"
#5  Foam::exp(Foam::Field<double>&, Foam::UList<double> const&) at ??:?
#6  ? at ??:?
#7  ? at ??:?
#8  __libc_start_main in "/lib/x86_64-linux-gnu/libc.so.6"
#9  ? at ??:?
Floating point exception (core dumped)
Best,
Sandra
sabago is offline   Reply With Quote

Old   February 29, 2016, 20:44
Default
  #7
Senior Member
 
Join Date: Aug 2013
Posts: 407
Rep Power: 15
Antimony is on a distinguished road
Hi,

I see that you have a floating point exception, as a result of which I am tempted to say that some quantity reaches zero and is used as the divisor. You might want to check the minimum area of an element via checkMesh and ensure that you don't have any zero area element that has come about because of the mesh grading.

Hope this helps.

Cheers,
Antimony
Antimony is offline   Reply With Quote

Old   March 2, 2016, 10:07
Default
  #8
Member
 
Sandra
Join Date: Oct 2014
Posts: 58
Rep Power: 11
sabago is on a distinguished road
Hi again,

1. Thank you for your input but I seem to see a bigger issue. When I revert to simple grading and blockMesh, I still get the error when I run the solver so it doesn't make sense that the issue is from the grading coz reverting should fix it, no? So far, I have had to recopy the case to 2.4.x to make sure it's not my case that's causing problems and it runs fine if I just copy it and blockMesh without adding the multi-grading.
2.Here's the equation below; the parameters Rg (gas constant) and T(Temperature) are constants in the tranportProperties so I'm certain that there's no division by zero, otherwise, the error would say "FPE, division etc", no?
Code:
jbvagCell = iagCell*((Foam::exp(alphaaa*F*EttaaCell/(Rg*T)))-(Foam::exp(-alphaca*F*EttaaCell/(Rg*T))));
Best,
Sandra
sabago is offline   Reply With Quote

Old   March 2, 2016, 19:45
Default
  #9
Senior Member
 
Join Date: Aug 2013
Posts: 407
Rep Power: 15
Antimony is on a distinguished road
Hi,

My apologies. Floating point exception could be either division by zero or an extremely large number. As you have an exp term, again, it is tempting to say that that is what is causing it to blow up.

I would suggest that you write out the results at the end of every step (since you mentioned that it runs up to 10 iterations and then crashes) and view the results to help troubleshoot the problem. You will then know (hopefully!) which quantity is causing the problem.

Apart from this though, at the moment, I can't think of any other solution.

Cheers,
Antimony
Antimony is offline   Reply With Quote

Old   March 3, 2016, 03:13
Default
  #10
Member
 
Sandra
Join Date: Oct 2014
Posts: 58
Rep Power: 11
sabago is on a distinguished road
Thanks Antimony,

How about the issue where i revert to simple grading and still error after i blockMesh and run the solver?

Sandra
sabago is offline   Reply With Quote

Old   March 3, 2016, 10:33
Default
  #11
Senior Member
 
Join Date: Aug 2013
Posts: 407
Rep Power: 15
Antimony is on a distinguished road
Hi,

I would suggest that you run my previous comment first with the regular blockMesh and figure out the problem.

Once that is settled, moving to a graded blockMesh (and troubleshooting it if necessary) should be easier.

Cheers,
Antimony
Antimony is offline   Reply With Quote

Reply


Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are Off
Pingbacks are On
Refbacks are On


Similar Threads
Thread Thread Starter Forum Replies Last Post
[Salome] Salome import "Cannot find file "points" in directory..." mismichael OpenFOAM Meshing & Mesh Conversion 5 June 22, 2019 02:56
problem during mpi in server: expected Scalar, found on line 0 the word 'nan' muth OpenFOAM Running, Solving & CFD 3 August 27, 2018 04:18
simpleFoam parallel AndrewMortimer OpenFOAM Running, Solving & CFD 12 August 7, 2015 18:45
[snappyHexMesh] sHM: FATAL ERROR: More than six unsigned transforms detected Djub OpenFOAM Meshing & Mesh Conversion 0 July 15, 2014 04:43
error while compiling the USER Sub routine CFD user CFX 3 November 25, 2002 15:16


All times are GMT -4. The time now is 19:47.