CFD Online Discussion Forums - [Gmsh] Error : Self intersecting surface mesh, computing intersections & Error : Impossible

Hi All,

I have found two mysterious problem. Let me explain what i have done.
I have found one gmsh example in cfd-online and try to replicate it.

http://www.cfd-online.com/Forums/ope...ary-layer.html

It works fine.

Then i Import the stl file and create the external domain{bounding box}.

Now created the prism layer using extrusion command upto certain height. Then try to create the volume from extrusion height to external domain.

But i'm facing a problem

nfo : Meshing volume 1 (extruded)
You are trying to generate a mixed structured/unstructured grid using
the 3D Delaunay algorithm. This algorithm cannot garantee that the
final mesh will be conforming. You should probably use the Frontal
Netgen algorithm instead. Do you really want to continue?

(To disable this warning in the future, select `Enable expert mode'
in the option dialog.)

[Continue] or [Cancel]? (default=Continue)
Info : Meshing volume 31 (Tetgen+Delaunay)
Constructing Delaunay tetrahedralization.
Delaunay seconds: 0.45
Creating surface mesh.
Perturbing vertices.
Delaunizing segments.
Constraining facets.
Error: Invalid PLC.
Two subfaces (4676, 2508, 2788) and (2507, 2508, 3905)
are found intersecting each other.
Hint: Use -d switch to find all intersecting facets.
Error : Self intersecting surface mesh, computing intersections (this could take a while)
Constructing Delaunay tetrahedralization.
Creating initial tetrahedralization.
Incrementally inserting points.
87097 Flips (T23 51371, T32 32804, T22 211, T44 2711)
Delaunay seconds: 0.44

When i visualize those mesh, i found that volume was created from the surface of stl file not from surface of extrusion layer.

When i try to mesh using netgen algorithm,

Info : Region 31 Face 4, 1 intersect
Info : CalcLocalH: 4672 Points 0 Elements 9336 Surface Elements
Info : WARNING: Intersecting elements 2429 and 8321
el1 = np = 3 3904 3905 4036
el2 = np = 3 2508 2788 3275
layer1 = 1
layer2 = 1
Info : WARNING: Intersecting elements 4954 and 8321
el1 = np = 3 2507 4036 3905
el2 = np = 3 2508 2788 3275

Without prism layer, meshing was perfect. But i need to add some prism layer near the surface.

Is it possible to add prism layer and volume mesh from the latest surface of prism layer ?

Second problem was,

Imported the stl file. Created extrusion layer and try to create again extrusion layer from the latest surface of previous extrusion layer. But i am getting error of

Error : Impossible to extrude entity 3 (of type 303)

So, we cant extrude layer from the lastest surface of the extrusion using stl file ?

lc=50;
length=1500;
dec=1000;

Coherence;
Merge "combine.stl";
Coherence;

s1 = news ;
s2 = s1 -1 ;
sl1 = newsl ; Surface Loop (sl1) = {s2} ;

Transfinite Surface {s2}; Recombine Surface {s2};

v2[] = Extrude{Surface{s2};Layers{8,1};Recombine;};

sl2 = newsl ; Surface Loop (sl2) = {-v2[0]} ;

// External Domain
xmin = -length + dec;
xmax = length ;
ymin = -length + dec;
ymax = length - dec;
zmin = -length + dec;
zmax = length - dec;

p1 = newp ; Point (p1) = { xmin, ymin, zmin ,lc }; p2 = newp ; Point (p2) = { xmax, ymin, zmin ,lc };
p3 = newp ; Point (p3) = { xmax, ymax, zmin ,lc }; p4 = newp ; Point (p4) = { xmin, ymax, zmin ,lc };
p5 = newp ; Point (p5) = { xmin, ymin, zmax ,lc }; p6 = newp ; Point (p6) = { xmax, ymin, zmax ,lc };
p7 = newp ; Point (p7) = { xmax, ymax, zmax ,lc }; p8 = newp ; Point (p8) = { xmin, ymax, zmax ,lc };

l1 = newl ; Line(l1) = {p1, p4}; l2 = newl ; Line(l2) = {p4, p8}; l3 = newl ; Line(l3) = {p8, p5}; l4 = newl ; Line(l4) = {p5, p1};
l5 = newl ; Line(l5) = {p2, p3}; l6 = newl ; Line(l6) = {p3, p7}; l7 = newl ; Line(l7) = {p7, p6}; l8 = newl ; Line(l8) = {p6, p2};
l9 = newl ; Line(l9) = {p1, p2}; l10 = newl ; Line(l10) = {p4, p3}; l11 = newl ; Line(l11) = {p5, p6}; l12 = newl ; Line(l12) = {p8, p7};
ll1 = newll ; Line Loop (ll1) = { l1,l2,l3,l4}; s3 = news ; Plane Surface (s3) ={ll1} ;
ll2 = newll ; Line Loop (ll2) = { l5,l6,l7,l8}; s4 = news ; Plane Surface (s4) ={ll2} ;
ll3 = newll ; Line Loop (ll3) = { -l3,l12,l7,-l11}; s5 = news ; Plane Surface (s5) ={ll3} ;
ll4 = newll ; Line Loop (ll4) = { l1,l10,-l5,-l9}; s6 = news ; Plane Surface (s6) ={ll4} ;
ll5 = newll ; Line Loop (ll5) = { l4,l9,-l8,-l11}; s7 = news ; Plane Surface (s7) ={ll5} ;
ll6 = newll ; Line Loop (ll6) = { -l2,l10,l6,-l12}; s8 = news ; Plane Surface (s8) ={ll6} ;
sl3 = newsl ; Surface Loop (sl3) = {s3,s4,s5,s6,s7,s8} ;

ps1=newreg ; Physical Surface("body") = {s2};
ps2=newreg ; Physical Surface("xmin") = {s3};
ps3=newreg ; Physical Surface("xmax") = {s4};
ps4=newreg ; Physical Surface("ymin") = {s5};
ps5=newreg ; Physical Surface("ymax") = {s6};
ps6=newreg ; Physical Surface("zmin") = {s7};
ps7=newreg ; Physical Surface("zmax") = {s8};

v3=newv ; Volume(v3) = {sl3,sl2};
v4=newv ; Physical Volume (v4) = { v3, v2[1]} ;

Thanks
- Ranjith