CFD Online Discussion Forums - Error: Could not open file XX.h for source file YY.C

Hi,
I am trying to test the compilation process for user-written OpenFOAM utilities on a Cray XT5 supercomputer (Kraken at NICS, Tennessee, USA). To begin with, I just made a copy of pisoFoam and tried to compile it:

Code:

  

  mkdir -p $WM_PROJECT_USER_DIR/applications/solvers/pisoFoamAJ

  cd $WM_PROJECT_USER_DIR/applications/solvers/pisoFoamAJ

  cp -r $FOAM_SOLVERS/incompressible/pisoFoam/* .

  wclean

  mv pisoFoam.C pisoFoamAJ.C

Then I edited Make/files to have the foll:

Code:

pisoFoamAJ.C

EXE = $(FOAM_USER_APPBIN)/pisoFoamAJ

Then from the directory pisoFoamAJ, when I run

Code:

wmake

I get the foll errors:

Code:

 

make: Warning: File `linux64GccDPOpt/dependencyFiles' has modification time 0.00083 s in the future

make: warning:  Clock skew detected.  Your build may be incomplete.

Making dependency list for source file pisoFoamAJ.C

could not open file cpuTime.H for source file pisoFoamAJ.C

could not open file fileMonitor.H for source file pisoFoamAJ.C

could not open file sigWriteNow.H for source file pisoFoamAJ.C

could not open file sigStopAtWriteNow.H for source file pisoFoamAJ.C

could not open file regExp.H for source file pisoFoamAJ.C

could not open file sigFpe.H for source file pisoFoamAJ.C

could not open file sigInt.H for source file pisoFoamAJ.C

could not open file sigQuit.H for source file pisoFoamAJ.C

could not open file sigSegv.H for source file pisoFoamAJ.C

SOURCE=pisoFoamAJ.C ;  CC -m64 -Dlinux64Gcc -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-100 -I/lustre/scratch/proj/sw/openfoam/2.1.1/cnl3.1_gnu4.6.2/OpenFOAM-2.1.1/src/turbulenceModels/incompressible/turbulenceModel -I/lustre/scratch/proj/sw/openfoam/2.1.1/cnl3.1_gnu4.6.2/OpenFOAM-2.1.1/src/transportModels -I/lustre/scratch/proj/sw/openfoam/2.1.1/cnl3.1_gnu4.6.2/OpenFOAM-2.1.1/src/transportModels/incompressible/singlePhaseTransportModel -I/lustre/scratch/proj/sw/openfoam/2.1.1/cnl3.1_gnu4.6.2/OpenFOAM-2.1.1/src/finiteVolume/lnInclude -IlnInclude -I. -I/lustre/scratch/proj/sw/openfoam/2.1.1/cnl3.1_gnu4.6.2/OpenFOAM-2.1.1/src/OpenFOAM/lnInclude -I/lustre/scratch/proj/sw/openfoam/2.1.1/cnl3.1_gnu4.6.2/OpenFOAM-2.1.1/src/OSspecific//lnInclude   -fPIC -c $SOURCE -o Make/linux64GccDPOpt/pisoFoamAJ.o

In file included from /lustre/scratch/proj/sw/openfoam/2.1.1/cnl3.1_gnu4.6.2/OpenFOAM-2.1.1/src/finiteVolume/lnInclude/fvCFD.H:6:0,

                 from pisoFoamAJ.C:34:

/lustre/scratch/proj/sw/openfoam/2.1.1/cnl3.1_gnu4.6.2/OpenFOAM-2.1.1/src/OpenFOAM/lnInclude/Time.H:46:21: fatal error: cpuTime.H: No such file or directory

compilation terminated.

make: *** [Make/linux64GccDPOpt/pisoFoamAJ.o] Error 1

Any idea why? Is it because of the clock skew? Or perhaps something in the OpenFOAM environment is screwed up? Below are the FOAM_ and WM_ environment variables for this machine:

Code:

 

env | grep FOAM_

FOAM_SOLVERS=/lustre/scratch/proj/sw/openfoam/2.1.1/cnl3.1_gnu4.6.2/OpenFOAM-2.1.1/applications/solvers

FOAM_EXT_LIBBIN=/lustre/scratch/proj/sw/openfoam/2.1.1/cnl3.1_gnu4.6.2/ThirdParty-2.1.1/platforms/linux64GccDPOpt/lib

FOAM_APPBIN=/lustre/scratch/proj/sw/openfoam/2.1.1/cnl3.1_gnu4.6.2/OpenFOAM-2.1.1/platforms/linux64GccDPOpt/bin

FOAM_TUTORIALS=/lustre/scratch/proj/sw/openfoam/2.1.1/cnl3.1_gnu4.6.2/OpenFOAM-2.1.1/tutorials

FOAM_JOB_DIR=/lustre/scratch/proj/sw/openfoam/2.1.1/cnl3.1_gnu4.6.2/jobControl

FOAM_SITE_APPBIN=/lustre/scratch/proj/sw/openfoam/2.1.1/cnl3.1_gnu4.6.2/site/2.1.1/platforms/linux64GccDPOpt/bin

OPENFOAM_LIB=-L /lustre/scratch/proj/sw/openfoam/2.1.1/cnl3.1_gnu4.6.2/OpenFOAM-2.1.1/lib

FOAM_APP=/lustre/scratch/proj/sw/openfoam/2.1.1/cnl3.1_gnu4.6.2/OpenFOAM-2.1.1/applications

FOAM_SITE_LIBBIN=/lustre/scratch/proj/sw/openfoam/2.1.1/cnl3.1_gnu4.6.2/site/2.1.1/platforms/linux64GccDPOpt/lib

FOAM_SRC=/lustre/scratch/proj/sw/openfoam/2.1.1/cnl3.1_gnu4.6.2/OpenFOAM-2.1.1/src

FOAM_SIGFPE=

FOAM_UTILITIES=/lustre/scratch/proj/sw/openfoam/2.1.1/cnl3.1_gnu4.6.2/OpenFOAM-2.1.1/applications/utilities

FOAM_USER_LIBBIN=/nics/c/home/janirban/OpenFOAM/janirban-2.1.1/platforms/linux64GccDPOpt/lib

OPENFOAM_INC=-I /lustre/scratch/proj/sw/openfoam/2.1.1/cnl3.1_gnu4.6.2/OpenFOAM-2.1.1/include

FOAM_INST_DIR=/lustre/scratch/proj/sw/openfoam/2.1.1/cnl3.1_gnu4.6.2

FOAM_MPI=mpich2-system

FOAM_LIBBIN=/lustre/scratch/proj/sw/openfoam/2.1.1/cnl3.1_gnu4.6.2/OpenFOAM-2.1.1/platforms/linux64GccDPOpt/lib

FOAM_SETTINGS=

FOAM_RUN=/nics/c/home/janirban/OpenFOAM/janirban-2.1.1/run

OPENFOAM_DIR=/lustre/scratch/proj/sw/openfoam/2.1.1/cnl3.1_gnu4.6.2/OpenFOAM-2.1.1

FOAM_USER_APPBIN=/nics/c/home/janirban/OpenFOAM/janirban-2.1.1/platforms/linux64GccDPOpt/bin

and

Code:

 

env | grep WM_

WM_LINK_LANGUAGE=c++

WM_ARCH=linux64Gcc

WM_PROJECT_VERSION=2.1.1

WM_CXXFLAGS=-m64 -fPIC

WM_CFLAGS=-m64 -fPIC

WM_COMPILER_LIB_ARCH=64

WM_PROJECT_INST_DIR=/lustre/scratch/proj/sw/openfoam/2.1.1/cnl3.1_gnu4.6.2

WM_PROJECT_DIR=/lustre/scratch/proj/sw/openfoam/2.1.1/cnl3.1_gnu4.6.2/OpenFOAM-2.1.1

WM_CXX=g++

WM_PROJECT=OpenFOAM

WM_LDFLAGS=-m64

WM_MPLIB=MPICH

WM_CC=gcc

WM_COMPILE_OPTION=Opt

WM_DIR=/lustre/scratch/proj/sw/openfoam/2.1.1/cnl3.1_gnu4.6.2/OpenFOAM-2.1.1/wmake

WM_PROJECT_USER_DIR=/nics/c/home/janirban/OpenFOAM/janirban-2.1.1

WM_OPTIONS=linux64GccDPOpt

WM_PRECISION_OPTION=DP

BTW the compiler is
gcc version 4.6.2 20111026 (Cray Inc.) (GCC)

Thanks much in anticipation of your help
Anirban