danny123 
June 19, 2013 05:23 
AMI interDyMFoam for mixer nu problem
Hello,
I have altered the mixerAMI tutorial case to have an interface between 2 phases. The calculation seems starting off ok, and build the 1st time folder (0.1 s) result out of 5 s. Then the program abborts having the following error message:
HTML Code:
dw@PC83U:~/OpenFOAM/dw2.1.x/run/MooneyMeter_AMI_interDymFoam_2$ mpirun np 6 interDyMFoam parallel > log &
[1] 3945
dw@PC83U:~/OpenFOAM/dw2.1.x/run/MooneyMeter_AMI_interDymFoam_2$ [1]
[1]
[1] > FOAM FATAL IO ERROR:
[1] keyword nu is undefined in dictionary "/home/dw/OpenFOAM/dw2.1.x/run/MooneyMeter_AMI_interDymFoam_2/processor1/constant/transportProperties"
[1]
[1] file: [2]
[2]
[2] > FOAM FATAL IO ERROR:
[2] keyword nu is undefined in dictionary "/home/dw/OpenFOAM/dw2.1.x/run/MooneyMeter_AMI_interDymFoam_2/processor2/constant/transportProperties"
[2]
[2] file: /home/dw/OpenFOAM/dw2.1.x/run/MooneyMeter_AMI_interDymFoam_2/processor2/constant/transportProperties from line 0 to line 0[4] [5]
[5]
[5] > FOAM FATAL IO ERROR:
[5] keyword nu is undefined in dictionary "/home/dw/OpenFOAM/dw2.1.x/run/MooneyMeter_AMI_interDymFoam_2/processor5/constant/transportProperties"
[5]
[5] file: /home/dw/OpenFOAM/dw2.1.x/run/MooneyMeter_AMI_interDymFoam_2/processor5/constant/transportProperties from line 0 to line 0.
[5]
[5] From function dictionary::lookupEntry(const word&, bool, bool) const/home/dw/OpenFOAM/dw2.1.x/run/MooneyMeter_AMI_interDymFoam_2/processor1/constant/transportProperties from line 0 to line 0.
[1]
[1] From function dictionary::lookupEntry(const word&, bool, bool) const
[1] in file db/dictionary/dictionary.C at line 400.
[1]
FOAM parallel run exiting
[1]
.
[2]
[2] From function dictionary::lookupEntry(const word&, bool, bool) const
[2] in file db/dictionary/dictionary.C at line 400.
[2]
FOAM parallel run exiting
[2]

MPI_ABORT was invoked on rank 5 in communicator MPI_COMM_WORLD
with errorcode 1.
NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.

[5] in file db/dictionary/dictionary.C at line 400.
[5]
FOAM parallel run exiting
[5]
[0]
[0]
[0] > FOAM FATAL IO ERROR:
[0] keyword nu is undefined in dictionary "/home/dw/OpenFOAM/dw2.1.x/run/MooneyMeter_AMI_interDymFoam_2/processor0/constant/transportProperties"
[0]
[0] file: /home/dw/OpenFOAM/dw2.1.x/run/MooneyMeter_AMI_interDymFoam_2/processor0/constant/transportProperties from line 20 to line 43.
[0]
[0] From function dictionary::lookupEntry(const word&, bool, bool) const
[0] in file db/dictionary/dictionary.C at line 400.
[0]
FOAM parallel run exiting
[0]
[3]
[3]
[3] > FOAM FATAL IO ERROR:
[3] keyword nu is undefined in dictionary "/home/dw/OpenFOAM/dw2.1.x/run/MooneyMeter_AMI_interDymFoam_2/processor3/constant/transportProperties"
[3]
[3] file: /home/dw/OpenFOAM/dw2.1.x/run/MooneyMeter_AMI_interDymFoam_2/processor3/constant/transportProperties from line 0 to line 0.
[3]
[3] From function dictionary::lookupEntry(const word&, bool, bool) const
[3] in file db/dictionary/dictionary.C at line 400.
[3]
FOAM parallel run exiting
[3]
[4]
[4] > FOAM FATAL IO ERROR:
[4] keyword nu is undefined in dictionary "/home/dw/OpenFOAM/dw2.1.x/run/MooneyMeter_AMI_interDymFoam_2/processor4/constant/transportProperties"
[4]
[4] file: /home/dw/OpenFOAM/dw2.1.x/run/MooneyMeter_AMI_interDymFoam_2/processor4/constant/transportProperties from line 0 to line 0.
[4]
[4] From function dictionary::lookupEntry(const word&, bool, bool) const
[4] in file db/dictionary/dictionary.C at line 400.
[4]
FOAM parallel run exiting
[4]

mpirun has exited due to process rank 5 with PID 3951 on
node PC83U exiting improperly. There are two reasons this could occur:
1. this process did not call "init" before exiting, but others in
the job did. This can cause a job to hang indefinitely while it waits
for all processes to call "init". By rule, if one process calls "init",
then ALL processes must call "init" prior to termination.
2. this process called "init", but exited without calling "finalize".
By rule, all processes that call "init" MUST call "finalize" prior to
exiting or it will be considered an "abnormal termination"
This may have caused other processes in the application to be
terminated by signals sent by mpirun (as reported here).

[PC83U:03945] 5 more processes have sent help message helpmpiapi.txt / mpiabort
[PC83U:03945] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
[1]+ Exit 1 mpirun np 6 interDyMFoam parallel > log
dw@PC83U:~/OpenFOAM/dw2.1.x/run/MooneyMeter_AMI_interDymFoam_2$
The last iteration step looks like this:
HTML Code:
Interface Courant Number mean: 0 max: 0
Courant Number mean: 0.00718959 max: 0.0288944
deltaT = 0.00863822
Time = 0.1
solidBodyMotionFunctions::rotatingMotion::transformation(): Time = 0.1 transformation: ((0 0 0) (0.999945 (0 0 0.0104718)))
AMI: Creating addressing and weights between 3834 source faces and 3834 target faces
AMI: Patch source weights min/max/average = 1, 1.00701, 1.00045
AMI: Patch target weights min/max/average = 1, 1.00435, 1.00039
Execution time for mesh.update() = 0.14 s
MULES: Solving for alpha1
Phase1 volume fraction = 0.531065 Min(alpha1) = 2.5463e34 Max(alpha1) = 1
MULES: Solving for alpha1
Phase1 volume fraction = 0.531065 Min(alpha1) = 1.57193e33 Max(alpha1) = 1
MULES: Solving for alpha1
Phase1 volume fraction = 0.531065 Min(alpha1) = 1.57193e33 Max(alpha1) = 1
PIMPLE: iteration 1
smoothSolver: Solving for Ux, Initial residual = 0.000580287, Final residual = 7.26327e06, No Iterations 7
smoothSolver: Solving for Uy, Initial residual = 0.000580396, Final residual = 7.1926e06, No Iterations 7
smoothSolver: Solving for Uz, Initial residual = 0.0348143, Final residual = 6.43603e06, No Iterations 17
GAMG: Solving for p_rgh, Initial residual = 4.63679e07, Final residual = 9.73762e09, No Iterations 11
time step continuity errors : sum local = 6.73903e08, global = 8.68606e09, cumulative = 2.30308e06
GAMG: Solving for p_rgh, Initial residual = 2.225e08, Final residual = 4.5959e09, No Iterations 6
time step continuity errors : sum local = 1.80979e07, global = 9.84622e09, cumulative = 2.31293e06
GAMG: Solving for p_rgh, Initial residual = 2.65858e08, Final residual = 7.77777e09, No Iterations 1
time step continuity errors : sum local = 1.27862e07, global = 9.97309e09, cumulative = 2.3229e06
GAMG: Solving for p_rgh, Initial residual = 1.39376e08, Final residual = 7.85448e09, No Iterations 2
time step continuity errors : sum local = 1.23004e07, global = 9.88666e09, cumulative = 2.33279e06
GAMG: Solving for p_rgh, Initial residual = 1.6827e08, Final residual = 2.94924e09, No Iterations 1
time step continuity errors : sum local = 4.24369e08, global = 9.88312e09, cumulative = 2.34267e06
GAMG: Solving for p_rgh, Initial residual = 5.29784e09, Final residual = 5.29784e09, No Iterations 0
time step continuity errors : sum local = 7.37101e08, global = 9.88904e09, cumulative = 2.35256e06
PIMPLE: iteration 2
smoothSolver: Solving for Ux, Initial residual = 0.000406186, Final residual = 9.17091e06, No Iterations 8
smoothSolver: Solving for Uy, Initial residual = 0.000406245, Final residual = 9.11417e06, No Iterations 8
smoothSolver: Solving for Uz, Initial residual = 0.03295, Final residual = 7.27708e06, No Iterations 17
GAMG: Solving for p_rgh, Initial residual = 1.20815e07, Final residual = 6.02623e09, No Iterations 8
time step continuity errors : sum local = 1.17466e07, global = 1.1788e08, cumulative = 2.36435e06
GAMG: Solving for p_rgh, Initial residual = 4.85723e08, Final residual = 9.21026e09, No Iterations 6
time step continuity errors : sum local = 1.65825e07, global = 1.0649e08, cumulative = 2.375e06
GAMG: Solving for p_rgh, Initial residual = 1.4502e07, Final residual = 8.6203e09, No Iterations 7
time step continuity errors : sum local = 2.90993e08, global = 1.05608e08, cumulative = 2.38556e06
GAMG: Solving for p_rgh, Initial residual = 4.74253e08, Final residual = 5.46874e09, No Iterations 1
time step continuity errors : sum local = 2.40905e08, global = 1.05746e08, cumulative = 2.39613e06
GAMG: Solving for p_rgh, Initial residual = 1.16193e08, Final residual = 4.55811e09, No Iterations 2
time step continuity errors : sum local = 1.99323e08, global = 1.05617e08, cumulative = 2.40669e06
GAMG: Solving for p_rgh, Initial residual = 9.88582e09, Final residual = 9.88582e09, No Iterations 0
time step continuity errors : sum local = 4.26416e08, global = 1.05606e08, cumulative = 2.41726e06
PIMPLE: iteration 3
smoothSolver: Solving for Ux, Initial residual = 7.31042e05, Final residual = 8.09888e06, No Iterations 3
smoothSolver: Solving for Uy, Initial residual = 7.3104e05, Final residual = 8.05193e06, No Iterations 3
smoothSolver: Solving for Uz, Initial residual = 0.0126386, Final residual = 8.20881e06, No Iterations 14
GAMG: Solving for p_rgh, Initial residual = 7.15945e08, Final residual = 7.47356e09, No Iterations 1
time step continuity errors : sum local = 3.32439e08, global = 1.059e08, cumulative = 2.42785e06
GAMG: Solving for p_rgh, Initial residual = 1.86575e08, Final residual = 4.7532e09, No Iterations 1
time step continuity errors : sum local = 2.10096e08, global = 1.0583e08, cumulative = 2.43843e06
GAMG: Solving for p_rgh, Initial residual = 8.49776e09, Final residual = 8.49776e09, No Iterations 0
time step continuity errors : sum local = 3.53645e08, global = 1.05813e08, cumulative = 2.44901e06
GAMG: Solving for p_rgh, Initial residual = 1.04412e08, Final residual = 3.86596e09, No Iterations 1
time step continuity errors : sum local = 1.63832e08, global = 1.05833e08, cumulative = 2.45959e06
GAMG: Solving for p_rgh, Initial residual = 4.58133e09, Final residual = 4.58133e09, No Iterations 0
time step continuity errors : sum local = 1.87374e08, global = 1.05827e08, cumulative = 2.47018e06
GAMG: Solving for p_rgh, Initial residual = 5.12872e09, Final residual = 5.12872e09, No Iterations 0
time step continuity errors : sum local = 2.09763e08, global = 1.05827e08, cumulative = 2.48076e06
PIMPLE: iteration 4
smoothSolver: Solving for Ux, Initial residual = 3.00653e05, Final residual = 7.61561e06, No Iterations 2
smoothSolver: Solving for Uy, Initial residual = 3.00715e05, Final residual = 7.61024e06, No Iterations 2
smoothSolver: Solving for Uz, Initial residual = 0.00640266, Final residual = 8.44997e06, No Iterations 13
GAMG: Solving for p_rgh, Initial residual = 2.59555e08, Final residual = 4.07093e09, No Iterations 1
time step continuity errors : sum local = 1.67074e08, global = 1.05998e08, cumulative = 2.49136e06
GAMG: Solving for p_rgh, Initial residual = 8.68281e09, Final residual = 8.68281e09, No Iterations 0
time step continuity errors : sum local = 3.60341e08, global = 1.06025e08, cumulative = 2.50196e06
GAMG: Solving for p_rgh, Initial residual = 1.17972e08, Final residual = 3.7096e09, No Iterations 1
time step continuity errors : sum local = 1.5422e08, global = 1.05886e08, cumulative = 2.51255e06
GAMG: Solving for p_rgh, Initial residual = 5.39397e09, Final residual = 5.39397e09, No Iterations 0
time step continuity errors : sum local = 2.22894e08, global = 1.05884e08, cumulative = 2.52314e06
GAMG: Solving for p_rgh, Initial residual = 6.74929e09, Final residual = 6.74929e09, No Iterations 0
time step continuity errors : sum local = 2.789e08, global = 1.05884e08, cumulative = 2.53373e06
GAMG: Solving for p_rgh, Initial residual = 7.69072e09, Final residual = 7.69072e09, No Iterations 0
time step continuity errors : sum local = 3.17803e08, global = 1.05884e08, cumulative = 2.54431e06
PIMPLE: iteration 5
smoothSolver: Solving for Ux, Initial residual = 1.45307e05, Final residual = 7.77353e06, No Iterations 1
smoothSolver: Solving for Uy, Initial residual = 1.4495e05, Final residual = 7.72975e06, No Iterations 1
smoothSolver: Solving for Uz, Initial residual = 0.0039205, Final residual = 8.98137e06, No Iterations 12
GAMG: Solving for p_rgh, Initial residual = 1.855e08, Final residual = 5.7775e09, No Iterations 1
time step continuity errors : sum local = 2.3897e08, global = 1.05728e08, cumulative = 2.55489e06
GAMG: Solving for p_rgh, Initial residual = 1.00594e08, Final residual = 3.79035e09, No Iterations 1
time step continuity errors : sum local = 1.5562e08, global = 1.05829e08, cumulative = 2.56547e06
GAMG: Solving for p_rgh, Initial residual = 5.14613e09, Final residual = 5.14613e09, No Iterations 0
time step continuity errors : sum local = 2.10885e08, global = 1.05838e08, cumulative = 2.57605e06
GAMG: Solving for p_rgh, Initial residual = 6.09124e09, Final residual = 6.09124e09, No Iterations 0
time step continuity errors : sum local = 2.49615e08, global = 1.05838e08, cumulative = 2.58664e06
GAMG: Solving for p_rgh, Initial residual = 6.82151e09, Final residual = 6.82151e09, No Iterations 0
time step continuity errors : sum local = 2.79541e08, global = 1.05838e08, cumulative = 2.59722e06
GAMG: Solving for p_rgh, Initial residual = 7.36735e09, Final residual = 7.36735e09, No Iterations 0
time step continuity errors : sum local = 3.01909e08, global = 1.05838e08, cumulative = 2.60781e06
PIMPLE: iteration 6
smoothSolver: Solving for Ux, Initial residual = 8.0169e06, Final residual = 9.08257e07, No Iterations 4
smoothSolver: Solving for Uy, Initial residual = 7.99963e06, Final residual = 8.9875e07, No Iterations 4
smoothSolver: Solving for Uz, Initial residual = 0.00224408, Final residual = 8.402e07, No Iterations 16
GAMG: Solving for p_rgh, Initial residual = 1.59378e08, Final residual = 4.26623e09, No Iterations 1
time step continuity errors : sum local = 1.74918e08, global = 1.0607e08, cumulative = 2.61841e06
GAMG: Solving for p_rgh, Initial residual = 8.24514e09, Final residual = 8.24514e09, No Iterations 0
time step continuity errors : sum local = 3.42347e08, global = 1.061e08, cumulative = 2.62902e06
GAMG: Solving for p_rgh, Initial residual = 1.10524e08, Final residual = 3.48832e09, No Iterations 1
time step continuity errors : sum local = 1.44895e08, global = 1.0589e08, cumulative = 2.63961e06
GAMG: Solving for p_rgh, Initial residual = 5.03605e09, Final residual = 5.03605e09, No Iterations 0
time step continuity errors : sum local = 2.07288e08, global = 1.05877e08, cumulative = 2.6502e06
GAMG: Solving for p_rgh, Initial residual = 6.05585e09, Final residual = 6.05585e09, No Iterations 0
time step continuity errors : sum local = 2.49263e08, global = 1.05877e08, cumulative = 2.66079e06
GAMGPCG: Solving for p_rgh, Initial residual = 6.71681e09, Final residual = 6.71681e09, No Iterations 0
time step continuity errors : sum local = 2.76469e08, global = 1.05877e08, cumulative = 2.67137e06
ExecutionTime = 26.87 s ClockTime = 27 s
I am a little confused. 1st: there is no transport property file within processor0 to 5 folders. There is, of course, in the parent folder. This looks like this:
Code:
/** C++ **\
 =========  
 \\ / F ield  OpenFOAM: The Open Source CFD Toolbox 
 \\ / O peration  Version: 2.1.x 
 \\ / A nd  Web: www.OpenFOAM.com 
 \\/ M anipulation  
\**/
FoamFile
{
version 2.0;
format ascii;
class dictionary;
location "constant";
object transportProperties;
}
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
phase1
{
transportModel CrossPowerLaw;
nu nu [ 0 2 1 0 0 0 0 ] 1;
CrossPowerLawCoeffs
{
nu0 nu0 [ 0 2 1 0 0 0 0 ] 310.553906;
nuInf nuInf [ 0 2 1 0 0 0 0 ] 0;
m m [ 0 0 1 0 0 0 0 ] 2.26191333;
n n [ 0 0 0 0 0 0 0 ] 0.33808236;
}
rho rho [ 1 3 0 0 0 0 0 ] 803.792583;
}
phase2
{
transportModel Newtonian;
nu nu [ 0 2 1 0 0 0 0 ] 1e5;
rho rho [ 1 3 0 0 0 0 0 ] 1;
}
sigma sigma [ 1 0 2 0 0 0 0 ] 0.05;
// ************************************************************************* //
One hint: the folder "forces" is empty, no data written except the header. This is, where it hangs?
Thanks for the help.
Regards,
Daniel
