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ngj November 10, 2011 07:00

Waves2Foam Related Topics
 
Dear all,

This thread has been started to replace the discussions in the announcement thread for waves2Foam, as most activities are not related to actually announcements.

Please use this thread as of now for any discussions, questions, problems or suggestions in relation to waves2Foam.

Thanks a lot for your corporation,

Niels

PS:


[Moderator note: The original post is actually this one: http://www.cfd-online.com/Forums/ope...tml#post355762 ]

tfuwa November 16, 2011 12:25

Waves2Foam Related Topics
 
Dear Niels,

Thanks so much for providing such a wonderful tool. I am doing some calculations of hydrodynamics around ocean structures, so wave2Foam is really a great toolbox for me. I am trying to install it at FOAM_USER_APPBIN. But after changing all the files-files (for instance, EXE = $(FOAM_USER_APPBIN)/wave2Foam), I got the following error.

Code:

SOURCE=relaxationZone/numericalBeach/numericalBeach.C ;  g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-40 -DOFVERSION=171    -I/opt/openfoam171/src/finiteVolume/lnInclude    -I/opt/openfoam171/src/meshTools/lnInclude    -I/usr/local/include    -I/usr/include -IlnInclude -I. -I/opt/openfoam171/src/OpenFOAM/lnInclude -I/opt/openfoam171/src/OSspecific/POSIX/lnInclude  -fPIC -c $SOURCE -o Make/linux64GccDPOpt/numericalBeach.o
SOURCE=relaxationZone/numericalBeach/newNumericalBeach.C ;  g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-40 -DOFVERSION=171    -I/opt/openfoam171/src/finiteVolume/lnInclude    -I/opt/openfoam171/src/meshTools/lnInclude    -I/usr/local/include    -I/usr/include -IlnInclude -I. -I/opt/openfoam171/src/OpenFOAM/lnInclude -I/opt/openfoam171/src/OSspecific/POSIX/lnInclude  -fPIC -c $SOURCE -o Make/linux64GccDPOpt/newNumericalBeach.o
SOURCE=relaxationZone/numericalBeach/empty/numericalBeachEmpty.C ;  g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-40 -DOFVERSION=171    -I/opt/openfoam171/src/finiteVolume/lnInclude    -I/opt/openfoam171/src/meshTools/lnInclude    -I/usr/local/include    -I/usr/include -IlnInclude -I. -I/opt/openfoam171/src/OpenFOAM/lnInclude -I/opt/openfoam171/src/OSspecific/POSIX/lnInclude  -fPIC -c $SOURCE -o Make/linux64GccDPOpt/numericalBeachEmpty.o
SOURCE=relaxationZone/relaxationZone.C ;  g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-40 -DOFVERSION=171    -I/opt/openfoam171/src/finiteVolume/lnInclude    -I/opt/openfoam171/src/meshTools/lnInclude    -I/usr/local/include    -I/usr/include -IlnInclude -I. -I/opt/openfoam171/src/OpenFOAM/lnInclude -I/opt/openfoam171/src/OSspecific/POSIX/lnInclude  -fPIC -c $SOURCE -o Make/linux64GccDPOpt/relaxationZone.o
'/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/bin/linux64GccDPOpt/libwaves2Foam.so' is up to date.
make[1]: Entering directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/solvers/solvers/waveFoam'
SOURCE=waveFoam.C ;  g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-40 -I/opt/openfoam171/src/transportModels    -I/opt/openfoam171/src/transportModels/incompressible/lnInclude    -I/opt/openfoam171/src/transportModels/interfaceProperties/lnInclude    -I/opt/openfoam171/src/turbulenceModels/incompressible/turbulenceModel    -I/opt/openfoam171/src/finiteVolume/lnInclude    -DOFVERSION=16    -I./../../../../src/lnInclude      -IlnInclude -I. -I/opt/openfoam171/src/OpenFOAM/lnInclude -I/opt/openfoam171/src/OSspecific/POSIX/lnInclude  -fPIC -c $SOURCE -o Make/linux64GccDPOpt/waveFoam.o
/opt/openfoam171/src/finiteVolume/lnInclude/readPISOControls.H: In function ‘int main(int, char**)’:
/opt/openfoam171/src/finiteVolume/lnInclude/readPISOControls.H:11:10: warning: unused variable ‘transonic’
/opt/openfoam171/src/finiteVolume/lnInclude/readPISOControls.H:14:9: warning: unused variable ‘nOuterCorr’
/opt/openfoam171/src/finiteVolume/lnInclude/readPISOControls.H:3:15: warning: unused variable ‘nCorr’
/opt/openfoam171/src/finiteVolume/lnInclude/readPISOControls.H:8:10: warning: unused variable ‘momentumPredictor’
/opt/openfoam171/src/finiteVolume/lnInclude/readPISOControls.H:11:10: warning: unused variable ‘transonic’
/opt/openfoam171/src/finiteVolume/lnInclude/readPISOControls.H:14:9: warning: unused variable ‘nOuterCorr’
g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-40 -I/opt/openfoam171/src/transportModels    -I/opt/openfoam171/src/transportModels/incompressible/lnInclude    -I/opt/openfoam171/src/transportModels/interfaceProperties/lnInclude    -I/opt/openfoam171/src/turbulenceModels/incompressible/turbulenceModel    -I/opt/openfoam171/src/finiteVolume/lnInclude    -DOFVERSION=16    -I./../../../../src/lnInclude      -IlnInclude -I. -I/opt/openfoam171/src/OpenFOAM/lnInclude -I/opt/openfoam171/src/OSspecific/POSIX/lnInclude  -fPIC -Xlinker --add-needed Make/linux64GccDPOpt/waveFoam.o -L/opt/openfoam171/lib/linux64GccDPOpt \
        -linterfaceProperties    -lincompressibleTransportModels    -lincompressibleTurbulenceModel    -lincompressibleRASModels    -lincompressibleLESModels    -lfiniteVolume    -lwaves2Foam -lOpenFOAM -liberty -ldl  -lm -o /home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/bin/linux64GccDPOpt/waveFoam
/opt/openfoam171/lib/linux64GccDPOpt/libinterfaceProperties.so: undefined reference to `typeinfo for Foam::alphaContactAngleFvPatchScalarField'
collect2: ld returned 1 exit status

make[1]: *** [/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/bin/linux64GccDPOpt/waveFoam] Error 1
make[1]: Leaving directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/solvers/solvers/waveFoam'
make: *** [waveFoam] Error 2

make: Target `application' not remade because of errors.
make[1]: Entering directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/utilities/misc'
make[2]: Entering directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/utilities/misc/matlab'
make[2]: Nothing to be done for `application'.
make[2]: Leaving directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/utilities/misc/matlab'
make[1]: Leaving directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/utilities/misc'
make[1]: Entering directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/utilities/preProcessing'
options:6:12: warning: backslash-newline at end of file
make[2]: Entering directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/utilities/preProcessing/relaxationZoneLayout'
SOURCE=relaxationZoneLayout.C ;  g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-40 -I/opt/openfoam171/src/finiteVolume/lnInclude    -DOFVERSION=171    -I./../../../../src/lnInclude -IlnInclude -I. -I/opt/openfoam171/src/OpenFOAM/lnInclude -I/opt/openfoam171/src/OSspecific/POSIX/lnInclude  -fPIC -c $SOURCE -o Make/linux64GccDPOpt/relaxationZoneLayout.o
g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-40 -I/opt/openfoam171/src/finiteVolume/lnInclude    -DOFVERSION=171    -I./../../../../src/lnInclude -IlnInclude -I. -I/opt/openfoam171/src/OpenFOAM/lnInclude -I/opt/openfoam171/src/OSspecific/POSIX/lnInclude  -fPIC -Xlinker --add-needed Make/linux64GccDPOpt/relaxationZoneLayout.o -L/opt/openfoam171/lib/linux64GccDPOpt \
        -lfiniteVolume    -lwaves2Foam  -lOpenFOAM -liberty -ldl  -lm -o /home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/bin/linux64GccDPOpt/relaxationZoneLayout
make[2]: Leaving directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/utilities/preProcessing/relaxationZoneLayout'
make[2]: Entering directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/utilities/preProcessing/setWaveField'
SOURCE=setWaveField.C ;  g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-40 -I/opt/openfoam171/src/finiteVolume/lnInclude    -DOFVERSION=171    -I./../../../../src/lnInclude    -IlnInclude -I. -I/opt/openfoam171/src/OpenFOAM/lnInclude -I/opt/openfoam171/src/OSspecific/POSIX/lnInclude  -fPIC -c $SOURCE -o Make/linux64GccDPOpt/setWaveField.o
g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-40 -I/opt/openfoam171/src/finiteVolume/lnInclude    -DOFVERSION=171    -I./../../../../src/lnInclude    -IlnInclude -I. -I/opt/openfoam171/src/OpenFOAM/lnInclude -I/opt/openfoam171/src/OSspecific/POSIX/lnInclude  -fPIC -Xlinker --add-needed Make/linux64GccDPOpt/setWaveField.o -L/opt/openfoam171/lib/linux64GccDPOpt \
        -lfiniteVolume    -lwaves2Foam -lOpenFOAM -liberty -ldl  -lm -o /home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/bin/linux64GccDPOpt/setWaveField
make[2]: Leaving directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/utilities/preProcessing/setWaveField'
make[2]: Entering directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/utilities/preProcessing/setWaveParameters'
SOURCE=setWaveParameters.C ;  g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-40 -DOFVERSION=171    -I/opt/openfoam171/src/finiteVolume/lnInclude    -I./../../../../src/lnInclude    -I./../../../../src/lnInclude    -I/usr/local/include    -I/include -IlnInclude -I. -I/opt/openfoam171/src/OpenFOAM/lnInclude -I/opt/openfoam171/src/OSspecific/POSIX/lnInclude  -fPIC -c $SOURCE -o Make/linux64GccDPOpt/setWaveParameters.o
g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-40 -DOFVERSION=171    -I/opt/openfoam171/src/finiteVolume/lnInclude    -I./../../../../src/lnInclude    -I./../../../../src/lnInclude    -I/usr/local/include    -I/include -IlnInclude -I. -I/opt/openfoam171/src/OpenFOAM/lnInclude -I/opt/openfoam171/src/OSspecific/POSIX/lnInclude  -fPIC -Xlinker --add-needed Make/linux64GccDPOpt/setWaveParameters.o -L/opt/openfoam171/lib/linux64GccDPOpt \
        -lfiniteVolume    -lgsl    -lgslcblas    -lwaves2Foam -lOpenFOAM -liberty -ldl  -lm -o /home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/bin/linux64GccDPOpt/setWaveParameters
make[2]: Leaving directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/utilities/preProcessing/setWaveParameters'
make[1]: Leaving directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/utilities/preProcessing'

As you may see, I am using OF171 and Ubuntu 11.04 natty. Can you please help me come out from this problem? Any suggestions would be greatly appreciated.

Kind regards,
Albert

ngj November 16, 2011 13:24

Hi Albert

Thanks a lot for the kind comments.

I have just tried making a local compilation, and I did not experience any problems. What I can note from your installation is:

1. To preserve consistency you should do LIB=$(FOAM_USER_LIBBIN)/libwaves2Foam and not $(FOAM_USER_APPBIN) as it appears from your log-file. If you have a problem compiling the code, then it is because you have not created the directory /home/tfuwa/OpenFOAM/tfuwa-1.7.1/lib

2. From the log, it seems that all of the utilities are compiled correctly (can you verify that, i.e. by running them?) Only the solver, waveFoam, is not compiled correctly and it is due to a problem with libinterfaceProperties, which is natively OpenFOAM. To narrow down the problem, could you try to compile interFoam in your USER directory.

Kind regards,

Niels

tfuwa November 17, 2011 06:33

2 Attachment(s)
Hi Niels,

Thanks very much for your quick reply and your time considering this error.

1, I made the change as you suggested LIB=$(FOAM_USER_LIBBIN)/libwaves2Foam . While I can compile, the error consists. But yes, you are right that utilities(setWaveParameters, setWaveFields) are compiled successfully and can be run.

Code:

tfuwa@tfuwa:~/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam$ ./Allwmake
wmakeLnInclude: linking include files to ./lnInclude
Making dependency list for source file convexPolyhedral/convexPolyhedral.C
....
Making dependency list for source file relaxationZone/relaxationZone.C
SOURCE=convexPolyhedral/convexPolyhedral.C ;  g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-40 -DOFVERSION=171    -I/opt/openfoam171/src/finiteVolume/lnInclude    -I/opt/openfoam171/src/meshTools/lnInclude    -I/usr/local/include    -I/usr/include -IlnInclude -I. -I/opt/openfoam171/src/OpenFOAM/lnInclude -I/opt/openfoam171/src/OSspecific/POSIX/lnInclude  -fPIC -c $SOURCE -o Make/linux64GccDPOpt/convexPolyhedral.o
....
SOURCE=relaxationZone/relaxationZone.C ;  g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-40 -DOFVERSION=171    -I/opt/openfoam171/src/finiteVolume/lnInclude    -I/opt/openfoam171/src/meshTools/lnInclude    -I/usr/local/include    -I/usr/include -IlnInclude -I. -I/opt/openfoam171/src/OpenFOAM/lnInclude -I/opt/openfoam171/src/OSspecific/POSIX/lnInclude  -fPIC -c $SOURCE -o Make/linux64GccDPOpt/relaxationZone.o
'/home/tfuwa/OpenFOAM/tfuwa-1.7.1/lib/linux64GccDPOpt/libwaves2Foam.so' is up to date.
Making dependency list for source file waveFoam.C
make[1]: Entering directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/solvers/solvers/waveFoam'
SOURCE=waveFoam.C ;  g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-40 -I/opt/openfoam171/src/transportModels    -I/opt/openfoam171/src/transportModels/incompressible/lnInclude    -I/opt/openfoam171/src/transportModels/interfaceProperties/lnInclude    -I/opt/openfoam171/src/turbulenceModels/incompressible/turbulenceModel    -I/opt/openfoam171/src/finiteVolume/lnInclude    -DOFVERSION=16    -I./../../../../src/lnInclude      -IlnInclude -I. -I/opt/openfoam171/src/OpenFOAM/lnInclude -I/opt/openfoam171/src/OSspecific/POSIX/lnInclude  -fPIC -c $SOURCE -o Make/linux64GccDPOpt/waveFoam.o
/opt/openfoam171/src/finiteVolume/lnInclude/readPISOControls.H: In function ‘int main(int, char**)’:
/opt/openfoam171/src/finiteVolume/lnInclude/readPISOControls.H:11:10: warning: unused variable ‘transonic’
/opt/openfoam171/src/finiteVolume/lnInclude/readPISOControls.H:14:9: warning: unused variable ‘nOuterCorr’
/opt/openfoam171/src/finiteVolume/lnInclude/readPISOControls.H:3:15: warning: unused variable ‘nCorr’
/opt/openfoam171/src/finiteVolume/lnInclude/readPISOControls.H:8:10: warning: unused variable ‘momentumPredictor’
/opt/openfoam171/src/finiteVolume/lnInclude/readPISOControls.H:11:10: warning: unused variable ‘transonic’
/opt/openfoam171/src/finiteVolume/lnInclude/readPISOControls.H:14:9: warning: unused variable ‘nOuterCorr’
g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-40 -I/opt/openfoam171/src/transportModels    -I/opt/openfoam171/src/transportModels/incompressible/lnInclude    -I/opt/openfoam171/src/transportModels/interfaceProperties/lnInclude    -I/opt/openfoam171/src/turbulenceModels/incompressible/turbulenceModel    -I/opt/openfoam171/src/finiteVolume/lnInclude    -DOFVERSION=16    -I./../../../../src/lnInclude      -IlnInclude -I. -I/opt/openfoam171/src/OpenFOAM/lnInclude -I/opt/openfoam171/src/OSspecific/POSIX/lnInclude  -fPIC -Xlinker --add-needed Make/linux64GccDPOpt/waveFoam.o -L/opt/openfoam171/lib/linux64GccDPOpt \
        -linterfaceProperties    -lincompressibleTransportModels    -lincompressibleTurbulenceModel    -lincompressibleRASModels    -lincompressibleLESModels    -lfiniteVolume    -L/home/tfuwa/OpenFOAM/tfuwa-1.7.1/lib/linux64GccDPOpt    -lwaves2Foam -lOpenFOAM -liberty -ldl  -lm -o /home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/bin/linux64GccDPOpt/waveFoam
/opt/openfoam171/lib/linux64GccDPOpt/libinterfaceProperties.so: undefined reference to `typeinfo for Foam::alphaContactAngleFvPatchScalarField'
collect2: ld returned 1 exit status
make[1]: *** [/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/bin/linux64GccDPOpt/waveFoam] Error 1

make[1]: Leaving directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/solvers/solvers/waveFoam'
make: *** [waveFoam] Error 2
make: Target `application' not remade because of errors.
make[1]: Entering directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/utilities/misc'
make[2]: Entering directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/utilities/misc/matlab'
make[2]: Nothing to be done for `application'.
make[2]: Leaving directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/utilities/misc/matlab'
make[1]: Leaving directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/utilities/misc'
make[1]: Entering directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/utilities/preProcessing'
make[2]: Entering directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/utilities/preProcessing/relaxationZoneLayout'
Making dependency list for source file relaxationZoneLayout.C
could not open file readEnvironmentalProperties.H for source file relaxationZoneLayout.C
make[2]: Leaving directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/utilities/preProcessing/relaxationZoneLayout'
make[2]: Entering directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/utilities/preProcessing/relaxationZoneLayout'
SOURCE=relaxationZoneLayout.C ;  g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-40 -I/opt/openfoam171/src/finiteVolume/lnInclude    -DOFVERSION=171    -I./../../../../src/lnInclude -IlnInclude -I. -I/opt/openfoam171/src/OpenFOAM/lnInclude -I/opt/openfoam171/src/OSspecific/POSIX/lnInclude  -fPIC -c $SOURCE -o Make/linux64GccDPOpt/relaxationZoneLayout.o
g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-40 -I/opt/openfoam171/src/finiteVolume/lnInclude    -DOFVERSION=171    -I./../../../../src/lnInclude -IlnInclude -I. -I/opt/openfoam171/src/OpenFOAM/lnInclude -I/opt/openfoam171/src/OSspecific/POSIX/lnInclude  -fPIC -Xlinker --add-needed Make/linux64GccDPOpt/relaxationZoneLayout.o -L/opt/openfoam171/lib/linux64GccDPOpt \
        -lfiniteVolume    -L/home/tfuwa/OpenFOAM/tfuwa-1.7.1/lib/linux64GccDPOpt    -lwaves2Foam -lOpenFOAM -liberty -ldl  -lm -o /home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/bin/linux64GccDPOpt/relaxationZoneLayout
make[2]: Leaving directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/utilities/preProcessing/relaxationZoneLayout'
make[2]: Entering directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/utilities/preProcessing/setWaveField'
Making dependency list for source file setWaveField.C
could not open file readEnvironmentalProperties.H for source file setWaveField.C
make[2]: Leaving directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/utilities/preProcessing/setWaveField'
make[2]: Entering directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/utilities/preProcessing/setWaveField'
SOURCE=setWaveField.C ;  g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-40 -I/opt/openfoam171/src/finiteVolume/lnInclude    -DOFVERSION=171    -I./../../../../src/lnInclude    -IlnInclude -I. -I/opt/openfoam171/src/OpenFOAM/lnInclude -I/opt/openfoam171/src/OSspecific/POSIX/lnInclude  -fPIC -c $SOURCE -o Make/linux64GccDPOpt/setWaveField.o
g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-40 -I/opt/openfoam171/src/finiteVolume/lnInclude    -DOFVERSION=171    -I./../../../../src/lnInclude    -IlnInclude -I. -I/opt/openfoam171/src/OpenFOAM/lnInclude -I/opt/openfoam171/src/OSspecific/POSIX/lnInclude  -fPIC -Xlinker --add-needed Make/linux64GccDPOpt/setWaveField.o -L/opt/openfoam171/lib/linux64GccDPOpt \
        -lfiniteVolume    -L/home/tfuwa/OpenFOAM/tfuwa-1.7.1/lib/linux64GccDPOpt    -lwaves2Foam -lOpenFOAM -liberty -ldl  -lm -o /home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/bin/linux64GccDPOpt/setWaveField
make[2]: Leaving directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/utilities/preProcessing/setWaveField'
make[2]: Entering directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/utilities/preProcessing/setWaveParameters'
Making dependency list for source file setWaveParameters.C
could not open file readEnvironmentalProperties.H for source file setWaveParameters.C
make[2]: Leaving directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/utilities/preProcessing/setWaveParameters'
make[2]: Entering directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/utilities/preProcessing/setWaveParameters'
SOURCE=setWaveParameters.C ;  g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-40 -DOFVERSION=171    -I/opt/openfoam171/src/finiteVolume/lnInclude    -I./../../../../src/lnInclude    -I./../../../../src/lnInclude    -I/usr/local/include    -I/include -IlnInclude -I. -I/opt/openfoam171/src/OpenFOAM/lnInclude -I/opt/openfoam171/src/OSspecific/POSIX/lnInclude  -fPIC -c $SOURCE -o Make/linux64GccDPOpt/setWaveParameters.o
g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-40 -DOFVERSION=171    -I/opt/openfoam171/src/finiteVolume/lnInclude    -I./../../../../src/lnInclude    -I./../../../../src/lnInclude    -I/usr/local/include    -I/include -IlnInclude -I. -I/opt/openfoam171/src/OpenFOAM/lnInclude -I/opt/openfoam171/src/OSspecific/POSIX/lnInclude  -fPIC -Xlinker --add-needed Make/linux64GccDPOpt/setWaveParameters.o -L/opt/openfoam171/lib/linux64GccDPOpt \
        -lfiniteVolume    -lgsl    -lgslcblas    -L/home/tfuwa/OpenFOAM/tfuwa-1.7.1/lib/linux64GccDPOpt    -lwaves2Foam -lOpenFOAM -liberty -ldl  -lm -o /home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/bin/linux64GccDPOpt/setWaveParameters
make[2]: Leaving directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/utilities/preProcessing/setWaveParameters'

2, interFoam can be compiled in both USER and ROOT directory.
Code:

tfuwa@tfuwa:~/OpenFOAM/tfuwa-1.7.1/applications/interFoamTestCompile$ ./Allwmake
+ wmake
Making dependency list for source file interFoamTestCompile.C
SOURCE=interFoamTestCompile.C ;  g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-40 -I/opt/openfoam171/src/transportModels    -I/opt/openfoam171/src/transportModels/incompressible/lnInclude    -I/opt/openfoam171/src/transportModels/interfaceProperties/lnInclude    -I/opt/openfoam171/src/turbulenceModels/incompressible/turbulenceModel    -I/opt/openfoam171/src/finiteVolume/lnInclude -IlnInclude -I. -I/opt/openfoam171/src/OpenFOAM/lnInclude -I/opt/openfoam171/src/OSspecific/POSIX/lnInclude  -fPIC -c $SOURCE -o Make/linux64GccDPOpt/interFoamTestCompile.o
/opt/openfoam171/src/finiteVolume/lnInclude/readPISOControls.H: In function ‘int main(int, char**)’:
/opt/openfoam171/src/finiteVolume/lnInclude/readPISOControls.H:11:10: warning: unused variable ‘transonic’
/opt/openfoam171/src/finiteVolume/lnInclude/readPISOControls.H:14:9: warning: unused variable ‘nOuterCorr’
/opt/openfoam171/src/finiteVolume/lnInclude/readPISOControls.H:3:15: warning: unused variable ‘nCorr’
/opt/openfoam171/src/finiteVolume/lnInclude/readPISOControls.H:8:10: warning: unused variable ‘momentumPredictor’
/opt/openfoam171/src/finiteVolume/lnInclude/readPISOControls.H:11:10: warning: unused variable ‘transonic’
/opt/openfoam171/src/finiteVolume/lnInclude/readPISOControls.H:14:9: warning: unused variable ‘nOuterCorr’
g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-40 -I/opt/openfoam171/src/transportModels    -I/opt/openfoam171/src/transportModels/incompressible/lnInclude    -I/opt/openfoam171/src/transportModels/interfaceProperties/lnInclude    -I/opt/openfoam171/src/turbulenceModels/incompressible/turbulenceModel    -I/opt/openfoam171/src/finiteVolume/lnInclude -IlnInclude -I. -I/opt/openfoam171/src/OpenFOAM/lnInclude -I/opt/openfoam171/src/OSspecific/POSIX/lnInclude  -fPIC -Xlinker --add-needed Make/linux64GccDPOpt/interFoamTestCompile.o -L/opt/openfoam171/lib/linux64GccDPOpt \
        -ltwoPhaseInterfaceProperties    -lincompressibleTransportModels    -lincompressibleTurbulenceModel    -lincompressibleRASModels    -lincompressibleLESModels    -lfiniteVolume -lOpenFOAM -liberty -ldl  -lm -o /home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/bin/linux64GccDPOpt/interFoamTestCompile

make[1]: Leaving directory `/home/tfuwa/OpenFOAM/tfuwa-1.7.1/applications/waves2Foam/applications/utilities/preProcessing'

3, I assume some parts of the OpenFOAM maybe not compiled correctly at the beginning, so reinstall a fresh new OpenFOAM-1.7.x as root. (download through: git clone git://github.com/OpenCFD/OpenFOAM-1.7.x.git ; install without any error) Then compile waves2Foam, but failed both as root (with no changes to waves2Foam) and as user (with changes to options and files files), due to the same error.

Code:


'/opt/OpenFOAM/OpenFOAM-1.7.x/lib/linux64GccDPOpt/libwaves2Foam.so' is up to date.
Making dependency list for source file waveFoam.C
make[1]: Entering directory `/opt/OpenFOAM/OpenFOAM-1.7.x/applications/solvers/multiphase/waves2Foam/applications/solvers/solvers/waveFoam'
$SOURCE -o Make/linux64GccDPOpt/waveFoam.o
/opt/OpenFOAM/OpenFOAM-1.7.x/src/finiteVolume/lnInclude/readPISOControls.H: In function ‘int main(int, char**)’:
....
/opt/OpenFOAM/OpenFOAM-1.7.x/src/finiteVolume/lnInclude/readPISOControls.H:14:9: warning: unused variable ‘nOuterCorr’
g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-40 -I/opt/OpenFOAM/OpenFOAM-1.7.x/src/transportModels    -I/opt/OpenFOAM/OpenFOAM-1.7.x/src/transportModels/incompressible/lnInclude    -I/opt/OpenFOAM/OpenFOAM-1.7.x/src/transportModels/interfaceProperties/lnInclude    -I/opt/OpenFOAM/OpenFOAM-1.7.x/src/turbulenceModels/incompressible/turbulenceModel    -I/opt/OpenFOAM/OpenFOAM-1.7.x/src/finiteVolume/lnInclude    -DOFVERSION=16    -I./../../../../src/lnInclude      -IlnInclude -I. -I/opt/OpenFOAM/OpenFOAM-1.7.x/src/OpenFOAM/lnInclude -I/opt/OpenFOAM/OpenFOAM-1.7.x/src/OSspecific/POSIX/lnInclude  -fPIC -Xlinker --add-needed Make/linux64GccDPOpt/waveFoam.o -L/opt/OpenFOAM/OpenFOAM-1.7.x/lib/linux64GccDPOpt \
        -linterfaceProperties    -lincompressibleTransportModels    -lincompressibleTurbulenceModel    -lincompressibleRASModels    -lincompressibleLESModels    -lfiniteVolume    -lwaves2Foam -lOpenFOAM -ldl  -lm -o /opt/OpenFOAM/OpenFOAM-1.7.x/applications/bin/linux64GccDPOpt/waveFoam
/opt/OpenFOAM/OpenFOAM-1.7.x/lib/linux64GccDPOpt/libinterfaceProperties.so: undefined reference to `typeinfo for Foam::alphaContactAngleFvPatchScalarField'
collect2: ld returned 1 exit status
make[1]: *** [/opt/OpenFOAM/OpenFOAM-1.7.x/applications/bin/linux64GccDPOpt/waveFoam] Error 1

make[1]: Leaving directory `/opt/OpenFOAM/OpenFOAM-1.7.x/applications/solvers/multiphase/waves2Foam/applications/solvers/solvers/waveFoam'
make: *** [waveFoam] Error 2
make: Target `application' not remade because of errors.
make[1]: Entering directory `/opt/OpenFOAM/OpenFOAM-1.7.x/applications/solvers/multiphase/waves2Foam/applications/utilities/misc'
make[2]: Entering directory `/opt/OpenFOAM/OpenFOAM-1.7.x/applications/solvers/multiphase/waves2Foam/applications/utilities/misc/matlab'
make[2]: Nothing to be done for `application'.
make[2]: Leaving directory `/opt/OpenFOAM/OpenFOAM-1.7.x/applications/solvers/multiphase/waves2Foam/applications/utilities/misc/matlab'
make[1]: Leaving directory `/opt/OpenFOAM/OpenFOAM-1.7.x/applications/solvers/multiphase/waves2Foam/applications/utilities/misc'
make[1]: Entering directory `/opt/OpenFOAM/OpenFOAM-1.7.x/applications/solvers/multiphase/waves2Foam/applications/utilities/preProcessing'
options:6:12: warning: backslash-newline at end of file
make[2]: Entering directory `/opt/OpenFOAM/OpenFOAM-1.7.x/applications/solvers/multiphase/waves2Foam/applications/utilities/preProcessing/relaxationZoneLayout'
Making dependency list for source file relaxationZoneLayout.C
could not open file readEnvironmentalProperties.H for source file relaxationZoneLayout.C
make[2]: Leaving directory `/opt/OpenFOAM/OpenFOAM-1.7.x/applications/solvers/multiphase/waves2Foam/applications/utilities/preProcessing/relaxationZoneLayout'
.....
SOURCE=setWaveParameters.C ;  g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-40 -DOFVERSION=17    -I/opt/OpenFOAM/OpenFOAM-1.7.x/src/finiteVolume/lnInclude    -I./../../../../src/lnInclude    -I./../../../../src/lnInclude    -I/usr/local/include    -I/include -IlnInclude -I. -I/opt/OpenFOAM/OpenFOAM-1.7.x/src/OpenFOAM/lnInclude -I/opt/OpenFOAM/OpenFOAM-1.7.x/src/OSspecific/POSIX/lnInclude  -fPIC -c $SOURCE -o Make/linux64GccDPOpt/setWaveParameters.o
g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-40 -DOFVERSION=17    -I/opt/OpenFOAM/OpenFOAM-1.7.x/src/finiteVolume/lnInclude    -I./../../../../src/lnInclude    -I./../../../../src/lnInclude    -I/usr/local/include    -I/include -IlnInclude -I. -I/opt/OpenFOAM/OpenFOAM-1.7.x/src/OpenFOAM/lnInclude -I/opt/OpenFOAM/OpenFOAM-1.7.x/src/OSspecific/POSIX/lnInclude  -fPIC -Xlinker --add-needed Make/linux64GccDPOpt/setWaveParameters.o -L/opt/OpenFOAM/OpenFOAM-1.7.x/lib/linux64GccDPOpt \
        -lfiniteVolume    -lgsl    -lgslcblas    -lwaves2Foam -lOpenFOAM -ldl  -lm -o /opt/OpenFOAM/OpenFOAM-1.7.x/applications/bin/linux64GccDPOpt/setWaveParameters
make[2]: Leaving directory `/opt/OpenFOAM/OpenFOAM-1.7.x/applications/solvers/multiphase/waves2Foam/applications/utilities/preProcessing/setWaveParameters'
make[1]: Leaving directory `/opt/OpenFOAM/OpenFOAM-1.7.x/applications/solvers/multiphase/waves2Foam/applications/utilities/preProcessing

This is quite strange as I encountered this error several times in different ways, but you cannot reproduce it. :mad:. I include the complete installing log below. Please let me know if more information is needed to find the reason (forgive me as I do not know what are necessary messages to narrow the problem). Thanks again for your help.

Kind regards,
Albert

ngj November 17, 2011 09:16

Hi

I suspect that it might be a problem with the solver-source. I have based it on OF-1.6-ext, however, I have never myself compiled it on 1.7.1, but one of my former colleagues did. Maybe he did not use my waveFoam but instead modified the interFoam distributed along with 1.7.1. Therefore:

Do a
Code:

grep "relaxing\|relaxationZone" *C *H
in the existing solver and edit interFoam in 1.7.1 according to those three lines from the grep. If you can then compile yourWaveFoam succesfully, please inform my, as I will update the svn and the Allwmake-script.

Kind regards,

Niels

ngj November 18, 2011 04:31

Hi Albert

I have been talking with my colleagues, and he did indeed base the solver on 1.7.1. material. I will make an update tonight or tomorrow. Unfortunately, I do not have an active 1.7-compilation on this computer.

Please accept my apologies for promising 1.7-compatibility.

- Niels

jordi.muela January 17, 2012 06:22

Hi all,

I was having the same compilation error that Albert, and i've found the solution to the problem.

If i'm not wrong, you should have installed the OF 1.7.1 Ubuntu (or suse) Pack installed with sudo apt-get ... like i had, and there's the problem, there is some error in the compilated installable pack, because i've downloaded the source pack and compiled it, and then i've compiled wave2foam without any problem! (well, i modified the Make files for install the solver in my USER path...).

So try to download and compile a new OF1.7.1, and then compile wave2foam. Hope it works!

I also like to congratulate Niels for develop this great tool! Thanks!

Jordi.

ngj January 17, 2012 06:24

Thanks for noting the difference :) I hope you can benefit from my work!

- Niels

dkingsley January 23, 2012 13:00

Waves2Foam --> of2+
 
Niels,

Thanks for all your work on the waves2Foam library and the tutorial on converting interFoam to waveFoam.

When compiling on of20x and of21x I had to removed the lines you commented with "//" in src/Make/files. It seems that the dependency tools in the of2+ versions do not like that form of commenting out a line.

thanks
Dennis

ngj January 23, 2012 13:42

Thanks for the bug-report. It is actually a shell/OS problem, as some OSs require lines to be commented by /* */ in stead of //.

I will change the SVN as soon as I am at my computer again.

Kind regards,

Niels

dkingsley January 23, 2012 13:48

I did build waves2Foam for of1.6ext with no changes on the same system prior to the of2+ versions. The system is a Rocks + RHEL 5.4 based cluster.

ngj January 23, 2012 13:52

Hmm, interesting, as we experienced the problem when moving to another OS.

Good luck with your endeavors with free surface flows.

- Niels

jordi.muela January 26, 2012 03:36

Hi All,

here i share a video showing a little example of wave2foam coupled with dynamic mesh motion. I've modified the waveFlume example:

http://youtu.be/YKbj_7JMRl8

Quote:

Thanks for noting the difference I hope you can benefit from my work!

- Niels
Sure, until now i was working with groovyBC when i need to generate waves, but my principal problem is the wave absortion, and i'm working with a modified version of interDyMFoam where i added a artificial damping coeficient in momentum equation, using a scalar field for act in the zones of interest, i.e. a numerical beach. But the relaxation zones that you implemented seems to work much better, so thank you again.

Jordi.

aka January 26, 2012 04:36

Hi Niels,
It is a great work. I also read your thesis and it is wonderful. Do you have a plan to release the sediment transport module you implmented for your dissertation?

Thanks,

ngj January 26, 2012 04:58

Hi all

@Jordi: Neat! Is it a free floating object or have you applied mooring lines? You might have noticed, but waves2Foam has already been made ready for a numerical beach; merely two things are missing, namely (i) define the variation(s) of the artificial viscosity and (ii) add the source term in the momentum equation in the solvers. The latter part is really easy, since the needed interface is already in place as can be seen from the wiki. Again it is made with runTime selection in mind.

@AKA: Thanks. No, we do not have any immediate plans for a release of the sediment transport/morphology module. Its state is by far mature enough.

Kind regards,

Niels

P.S. Forgot to mention that I have updated the waves2Foam/src/Make/files in the SVN. I also made a tiny change in the Allwmake, so if anyone experience problems with that, please tell me.

jordi.muela January 26, 2012 05:36

Hi,

Quote:

Originally Posted by ngj (Post 341236)
@Jordi: Neat! Is it a free floating object or have you applied mooring lines? You might have noticed, but waves2Foam has already been made ready for a numerical beach; merely two things are missing, namely (i) define the variation(s) of the artificial viscosity and (ii) add the source term in the momentum equation in the solvers. The latter part is really easy, since the needed interface is already in place as can be seen from the wiki. Again it is made with runTime selection in mind.

I've used a constraint plane XY and moments of inertia very highs in the three axis (that's the reason of the small pitch), to assure the stability in this simulation test.

tfuwa February 2, 2012 05:51

Hi all Foamers,

Just wonder is it possible to simulate wave + current with this tool?

kind regards,
Albert

ngj February 2, 2012 06:30

Waves2Foam Related Topics
 
Hi Albert

Yes, I have been using it to generate waves+current. In specific I generated stream-function waves with a non-zero stokes drift at the inlet. As I had a beach I modified some source terms and removed the net flux inside the computational domain, however, I think you should be able to use potentialCurrent as an outlet condition, where the target velocity differs from (0 0 0) and instead matches the velocity corresponding to the net flux at the inlet.

If you want to have other wave theories, then you must figure out (look up) the mathematical formulation and do the necessary implementation, as I have not done it with any other wave theory than stream function.

I hope that this answers you questions. There are some unknowns, but it should be feasible.

Kind regards,

Niels

s_braendli February 3, 2012 10:10

Hi to all

I just got started with waves2Foam (with OF 2.1.0) and I really enjoy it. Thanks a lot Niels!

Just a few minor comments:

- It looks like in the "squarePile" tutorial there is no p_rgh.org which is needed in 1.7 and later versions. I just copied the pd.org, I hope this is ok.

- In the "periodicSolitary" tutorial I had to run foamUpgradeCyclics before Allrun.

- Compiling with 2.1.0:

I got the following compiler error:

Code:

In file included from ./../../../../src/lnInclude/relaxationScheme.H:64:0,
                from ./../../../../src/lnInclude/relaxationZone.H:44,
                from waveFoam.C:48:
./../../../../src/lnInclude/waveTheory.H:62:5: error: floating constant in preprocessor expression

Solution: Just comment lines 62 and 64 in waveTheory.H -> Might cause problems if somebody intends to compile it with 1.5 later...

- fvSolution in 2.1.0:

I replaced

Code:

PISO
{
    pdRefCell 0;
    pdRefValue 0;
    momentumPredictor yes;
    nOuterCorrectors 1;
    nCorrectors    3;
    nNonOrthogonalCorrectors 1;
    nAlphaCorr      1;
    nAlphaSubCycles 1;
    cAlpha          1;
}

by

Code:

PIMPLE
{
    momentumPredictor yes;
    nCorrectors    3;
    nNonOrthogonalCorrectors 1;
    nAlphaCorr      1;
    nAlphaSubCycles 1;
    cAlpha          1;
}

So far it looks OK. Please correct me if you see something strange...

Have fun

Silvan

ngj February 3, 2012 10:25

Hi Silvan

Thanks. I have added the missing file from squarePile into the repository.

I will keep the other changes in mind, when I make a proper 2.0/2.1 supported version. I hope that you can survive with the manual labour until further notice.

/ Niels

P.S. Yes, the lines in waveTheory.H is needed for 1.5 support. Similar lines are also scattered around in the utilities. However, it does surprise me that you get that error, as you are the first one to report it, even though other people have successfully compiled on 2.0/2.1 (one of my students included).


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