| MacGyver |
May 7, 2012 10:00 |
interFoam & decomposition method: scotch
When running my case, this error is triggered:
log.interFoam:
Code:
[xs024:17484] mca: base: component_find: unable to open /share/openfoam/2.1.x/OpenFOAM/ThirdParty-2.1.x/platforms/linux64Gcc44/openmpi-1.5.3/lib/openmpi/mca_btl_ofud: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[xs024:17484] mca: base: component_find: unable to open /share/openfoam/2.1.x/OpenFOAM/ThirdParty-2.1.x/platforms/linux64Gcc44/openmpi-1.5.3/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[xs024:17488] mca: base: component_find: unable to open /share/openfoam/2.1.x/OpenFOAM/ThirdParty-2.1.x/platforms/linux64Gcc44/openmpi-1.5.3/lib/openmpi/mca_btl_ofud: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[xs024:17488] mca: base: component_find: unable to open /share/openfoam/2.1.x/OpenFOAM/ThirdParty-2.1.x/platforms/linux64Gcc44/openmpi-1.5.3/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[xs024:17486] mca: base: component_find: unable to open /share/openfoam/2.1.x/OpenFOAM/ThirdParty-2.1.x/platforms/linux64Gcc44/openmpi-1.5.3/lib/openmpi/mca_btl_ofud: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[xs024:17486] mca: base: component_find: unable to open /share/openfoam/2.1.x/OpenFOAM/ThirdParty-2.1.x/platforms/linux64Gcc44/openmpi-1.5.3/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[xs024:17483] mca: base: component_find: unable to open /share/openfoam/2.1.x/OpenFOAM/ThirdParty-2.1.x/platforms/linux64Gcc44/openmpi-1.5.3/lib/openmpi/mca_btl_ofud: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[xs024:17489] mca: base: component_find: unable to open /share/openfoam/2.1.x/OpenFOAM/ThirdParty-2.1.x/platforms/linux64Gcc44/openmpi-1.5.3/lib/openmpi/mca_btl_ofud: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[xs024:17482] mca: base: component_find: unable to open /share/openfoam/2.1.x/OpenFOAM/ThirdParty-2.1.x/platforms/linux64Gcc44/openmpi-1.5.3/lib/openmpi/mca_btl_ofud: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[xs024:17483] mca: base: component_find: unable to open /share/openfoam/2.1.x/OpenFOAM/ThirdParty-2.1.x/platforms/linux64Gcc44/openmpi-1.5.3/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[xs024:17489] mca: base: component_find: unable to open /share/openfoam/2.1.x/OpenFOAM/ThirdParty-2.1.x/platforms/linux64Gcc44/openmpi-1.5.3/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[xs024:17482] mca: base: component_find: unable to open /share/openfoam/2.1.x/OpenFOAM/ThirdParty-2.1.x/platforms/linux64Gcc44/openmpi-1.5.3/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[xs024:17485] mca: base: component_find: unable to open /share/openfoam/2.1.x/OpenFOAM/ThirdParty-2.1.x/platforms/linux64Gcc44/openmpi-1.5.3/lib/openmpi/mca_btl_ofud: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[xs024:17485] mca: base: component_find: unable to open /share/openfoam/2.1.x/OpenFOAM/ThirdParty-2.1.x/platforms/linux64Gcc44/openmpi-1.5.3/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[xs024:17487] mca: base: component_find: unable to open /share/openfoam/2.1.x/OpenFOAM/ThirdParty-2.1.x/platforms/linux64Gcc44/openmpi-1.5.3/lib/openmpi/mca_btl_ofud: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[xs024:17487] mca: base: component_find: unable to open /share/openfoam/2.1.x/OpenFOAM/ThirdParty-2.1.x/platforms/linux64Gcc44/openmpi-1.5.3/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
/*---------------------------------------------------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: 2.1.x |
| \\ / A nd | Web: www.OpenFOAM.org |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
Build : 2.1.x-bae608187e52
Exec : interFoam -parallel
Date : May 07 2012
Time : 15:51:21
Host : "xs024"
PID : 17482
Case : /path/OF/myBC_21_scotch
nProcs : 8
Slaves :
7
(
"xs024.17483"
"xs024.17484"
"xs024.17485"
"xs024.17486"
"xs024.17487"
"xs024.17488"
"xs024.17489"
)
Pstream initialized with:
floatTransfer : 0
nProcsSimpleSum : 0
commsType : nonBlocking
sigFpe : Enabling floating point exception trapping (FOAM_SIGFPE).
fileModificationChecking : Monitoring run-time modified files using timeStampMaster
allowSystemOperations : Allowing user-supplied system call operations
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
Create time
Create mesh for time = 0
[7] #0 Foam::error::printStack(Foam::Ostream&)[3] #0 Foam::error::printStack(Foam::Ostream&) in "/share/openfoam/2.1.x/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64Gcc44DPOpt/lib/libOpenFOAM.so"
[3] #1 Foam::sigSegv::sigHandler(int) in "/share/openfoam/2.1.x/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64Gcc44DPOpt/lib/libOpenFOAM.so"
[7] #1 Foam::sigSegv::sigHandler(int) in "/share/openfoam/2.1.x/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64Gcc44DPOpt in "/share/openfoam/2.1.x/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64Gcc44DP/liOpt/lib/libOpenFOAM.so"
[3] #2 b/libOpenFOAM.so"
[7] #2 ???? in "/lib64/libc.so.6"
[7] #3 Foam::processorPolyPatch::updateMesh(Foam::PstreamBuffers&) in "/lib64/libc.so.6"
[3] #3 Foam::processorPolyPatch::updateMesh(Foam::PstreamBuffers&) in "/share/openfoam/2.1.x/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64Gcc44DPOpt/lib/libOpenFOAM.so"
[7] #4 Foam::polyBoundaryMesh::updateMesh() in "/share/openfoam/2.1.x/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64Gcc44DPOpt/lib/libOpenFOAM.so"
[3] #4 Foam::polyBoundaryMesh::updateMesh() in "/share/openfoam/2.1.x/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64Gcc44DPOpt/lib/libOpenFOAM.so"
[7] #5 Foam::polyMesh::polyMesh(Foam::IOobject const&) in "/share/openfoam/2.1.x/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64Gcc44DPOpt/lib/libOpenFOAM.so"
[3] #5 Foam::polyMesh::polyMesh(Foam::IOobject const&) in "/share/openfoam/2.1.x/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64Gcc44DPOpt/lib/libOpenFOAM.so"
[7] #6 Foam::fvMesh::fvMesh(Foam::IOobject const&) in "/share/openfoam/2.1.x/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64Gcc44DPOpt/lib/libOpenFOAM.so"
[3] #6 Foam::fvMesh::fvMesh(Foam::IOobject const&) in "/share/openfoam/2.1.x/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64Gcc44DPOpt/lib/libfiniteVolume.so"
[7] #7 in "/share/openfoam/2.1.x/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64Gcc44DPOpt/lib/libfiniteVolume.so"
[3] #7 mainmain in "/share/openfoam/2.1.x/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64Gcc44DPOpt/bin/interFoam"
[3] #8 __libc_start_main in "/share/openfoam/2.1.x/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64Gcc44DPOpt/bin/interFoam"
[7] #8 __libc_start_main in "/lib64/libc.so.6"
[3] #9 Foam::regIOobject::writeObject(Foam::IOstream::streamFormat, Foam::IOstream::versionNumber, Foam::IOstream::compressionType) const in "/lib64/libc.so.6"
[7] #9 in "/share/openfoam/2.1.x/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64Gcc44DPOpt/bin/interFoam"
[xs024:17485] *** Process received signal ***
[xs024:17485] Signal: Segmentation fault (11)
[xs024:17485] Signal code: (-6)
[xs024:17485] Failing at address: 0x6510000444d
[xs024:17485] [ 0] /lib64/libc.so.6 [0x2b806c1a4bd0]
[xs024:17485] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x2b806c1a4b45]
[xs024:17485] [ 2] /lib64/libc.so.6 [0x2b806c1a4bd0]
[xs024:17485] [ 3] /share/openfoam/2.1.x/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64Gcc44DPOpt/lib/libOpenFOAM.so(_ZN4Foam18processorPolyPatch10updateMeshERNS_14PstreamBuffersE+0x2da) [0x2b806b35c0da]
[xs024:17485] [ 4] /share/openfoam/2.1.x/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64Gcc44DPOpt/lib/libOpenFOAM.so(_ZN4Foam16polyBoundaryMesh10updateMeshEv+0x2b1) [0x2b806b3616c1]
[xs024:17485] [ 5] /share/openfoam/2.1.x/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64Gcc44DPOpt/lib/libOpenFOAM.so(_ZN4Foam8polyMeshC2ERKNS_8IOobjectE+0xd16) [0x2b806b3b4c26]
[xs024:17485] [ 6] /share/openfoam/2.1.x/OpenFOAM/OpenFOAM-2.1.x/platforms/linux64Gcc44DPOpt/lib/libfiniteVolume.so(_ZN4Foam6fvMeshC1ERKNS_8IOobjectE+0x19) [0x2b806a2ccbb9]
[xs024:17485] [ 7] interFoam [0x424d90]
[xs024:17485] [ 8] /lib64/libc.so.6(__libc_start_main+0xf4) [0x2b806c191b54]
[xs024:17485] [ 9] interFoam(_ZNK4Foam11regIOobject11writeObjectENS_8IOstream12streamFormatENS1_13versionNumberENS1_15compressionTypeE+0x111) [0x421809]
[xs024:17485] *** End of error message ***
--------------------------------------------------------------------------
mpirun noticed that process rank 3 with PID 17485 on node xs024 exited on signal 11 (Segmentation fault).
--------------------------------------------------------------------------
The case is started with:
decomposePar -force
foamJob -p interFoam
Decomposition method "scotch" was applied. When using another method (like "hierarchical") no problem occured.
DecomposeParDict:
Code:
numberOfSubdomains 8;
//method hierarchical;
//method ptscotch;
method scotch;
simpleCoeffs
{
n ( 2 2 1 );
delta 0.001;
}
hierarchicalCoeffs
{
n (1 2 4);
delta 0.001;
order xyz;
}
metisCoeffs
{
processorWeights ( 1 1 1 1 1 1 1 1 );
// 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1);// 1 1 1 1 1 1);
}
manualCoeffs
{
dataFile "";
}
distributed no;
roots ( );
I use a Mesh created by snappyHexMesh with cyclic Boundaries. OF-Version 2.1.x.
Anyone encountered this problem and knows a solution?
Thank you!! |
