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Turbine Siting - Changing Geometry

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Old   March 15, 2014, 14:16
Default Turbine Siting - Changing Geometry
  #1
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Andrew Mortimer
Join Date: Oct 2013
Posts: 15
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I'm wondering if someone can give me a bit of help with some errors I'm getting.

I'm running the turbine siting tutorial with different geometry. So far I have changed the blockMeshDict and the snappyHexMeshDict to match the size of my new terrain.stl . I am getting errors though when solving it.

I have been using the ./Allrun script on 6 cores (4930k).

Below is the error I am getting out, not sure what is going wrong.

Code:
/*---------------------------------------------------------------------------*\
| =========                 |                                                 |
| \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox           |
|  \\    /   O peration     | Version:  2.2.2                                 |
|   \\  /    A nd           | Web:      www.OpenFOAM.org                      |
|    \\/     M anipulation  |                                                 |
\*---------------------------------------------------------------------------*/
Build  : 2.2.2-9240f8b967db
Exec   : simpleFoam -parallel
Date   : Mar 15 2014
Time   : 18:08:39
Host   : "andrew-pc"
PID    : 13373
Case   : /home/andrew/OpenFOAM/andrew-2.2.2/run/Dis/test_run
nProcs : 6
Slaves : 
5
(
"andrew-pc.13374"
"andrew-pc.13375"
"andrew-pc.13376"
"andrew-pc.13377"
"andrew-pc.13378"
)

Pstream initialized with:
    floatTransfer      : 0
    nProcsSimpleSum    : 0
    commsType          : nonBlocking
    polling iterations : 0
sigFpe : Enabling floating point exception trapping (FOAM_SIGFPE).
fileModificationChecking : Monitoring run-time modified files using timeStampMaster
allowSystemOperations : Disallowing user-supplied system call operations

// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
Create time

Create mesh for time = 0

Reading field p

Reading field U

[0] #0  [3] #0  Foam::error::printStack(Foam::Ostream&)Foam::error::printStack(Foam::Ostream&) in "/opt/openfoam222/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[3] #1  Foam::sigFpe::sigHandler(int) in "/opt/openfoam222/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[0] #1  Foam::sigFpe::sigHandler(int) in "/opt/openfoam222/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[0] #2   in "/opt/openfoam222/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[3] #2   in "/lib/x86_64-linux-gnu/libc.so.6"
[0] #3  log in "/lib/x86_64-linux-gnu/libc.so.6"
[3] #3  log in "/lib/x86_64-linux-gnu/libm.so.6"
[0] #4  Foam::incompressible::atmBoundaryLayerInletVelocityFvPatchVectorField::atmBoundaryLayerInletVelocityFvPatchVectorField(Foam::fvPatch const&, Foam::DimensionedField<Foam::Vector<double>, Foam::volMesh> const&, Foam::dictionary const&) in "/lib/x86_64-linux-gnu/libm.so.6"
[3] #4  Foam::incompressible::atmBoundaryLayerInletVelocityFvPatchVectorField::atmBoundaryLayerInletVelocityFvPatchVectorField(Foam::fvPatch const&, Foam::DimensionedField<Foam::Vector<double>, Foam::volMesh> const&, Foam::dictionary const&) in "/opt/openfoam222/platforms/linux64GccDPOpt/lib/libincompressibleRASModels.so"
[0] #5  Foam::fvPatchField<Foam::Vector<double> >::adddictionaryConstructorToTable<Foam::incompressible::atmBoundaryLayerInletVelocityFvPatchVectorField>::New(Foam::fvPatch const&, Foam::DimensionedField<Foam::Vector<double>, Foam::volMesh> const&, Foam::dictionary const&) in "/opt/openfoam222/platforms/linux64GccDPOpt/lib/libincompressibleRASModels.so"
[3] #5  Foam::fvPatchField<Foam::Vector<double> >::adddictionaryConstructorToTable<Foam::incompressible::atmBoundaryLayerInletVelocityFvPatchVectorField>::New(Foam::fvPatch const&, Foam::DimensionedField<Foam::Vector<double>, Foam::volMesh> const&, Foam::dictionary const&) in "/opt/openfoam222/platforms/linux64GccDPOpt/lib/libincompressibleRASModels.so"
[0] #6   in "/opt/openfoam222/platforms/linux64GccDPOpt/lib/libincompressibleRASModels.so"
[3] #6  Foam::fvPatchField<Foam::Vector<double> >::New(Foam::fvPatch const&, Foam::DimensionedField<Foam::Vector<double>, Foam::volMesh> const&, Foam::dictionary const&)Foam::fvPatchField<Foam::Vector<double> >::New(Foam::fvPatch const&, Foam::DimensionedField<Foam::Vector<double>, Foam::volMesh> const&, Foam::dictionary const&) in "/opt/openfoam222/platforms/linux64GccDPOpt/bin/simpleFoam"
[0] #7   in "/opt/openfoam222/platforms/linux64GccDPOpt/bin/simpleFoam"
[3] #7  Foam::GeometricField<Foam::Vector<double>, Foam::fvPatchField, Foam::volMesh>::GeometricBoundaryField::readField(Foam::DimensionedField<Foam::Vector<double>, Foam::volMesh> const&, Foam::dictionary const&)Foam::GeometricField<Foam::Vector<double>, Foam::fvPatchField, Foam::volMesh>::GeometricBoundaryField::readField(Foam::DimensionedField<Foam::Vector<double>, Foam::volMesh> const&, Foam::dictionary const&) in "/opt/openfoam222/platforms/linux64GccDPOpt/bin/simpleFoam"
[0] #8   in "/opt/openfoam222/platforms/linux64GccDPOpt/bin/simpleFoam"
[3] #8  Foam::GeometricField<Foam::Vector<double>, Foam::fvPatchField, Foam::volMesh>::readFields(Foam::dictionary const&)Foam::GeometricField<Foam::Vector<double>, Foam::fvPatchField, Foam::volMesh>::readFields(Foam::dictionary const&) in "/opt/openfoam222/platforms/linux64GccDPOpt/bin/simpleFoam"
[0] #9   in "/opt/openfoam222/platforms/linux64GccDPOpt/bin/simpleFoam"
[3] #9  Foam::GeometricField<Foam::Vector<double>, Foam::fvPatchField, Foam::volMesh>::readFields()Foam::GeometricField<Foam::Vector<double>, Foam::fvPatchField, Foam::volMesh>::readFields() in "/opt/openfoam222/platforms/linux64GccDPOpt/bin/simpleFoam"
[0] #10   in "/opt/openfoam222/platforms/linux64GccDPOpt/bin/simpleFoam"
[3] #10  Foam::GeometricField<Foam::Vector<double>, Foam::fvPatchField, Foam::volMesh>::GeometricField(Foam::IOobject const&, Foam::fvMesh const&)Foam::GeometricField<Foam::Vector<double>, Foam::fvPatchField, Foam::volMesh>::GeometricField(Foam::IOobject const&, Foam::fvMesh const&) in "/opt/openfoam222/platforms/linux64GccDPOpt/bin/simpleFoam"
[0] #11   in "/opt/openfoam222/platforms/linux64GccDPOpt/bin/simpleFoam"
[3] #11  

[0]  in "/opt/openfoam222/platforms/linux64GccDPOpt/bin/simpleFoam"
[0] #12  __libc_start_main[3]  in "/opt/openfoam222/platforms/linux64GccDPOpt/bin/simpleFoam"
[3] #12  __libc_start_main in  in "/lib/x86_64-linux-gnu/libc.so.6"
[3] #13  "/lib/x86_64-linux-gnu/libc.so.6"
[0] #13  

[3]  in "/opt/openfoam222/platforms/linux64GccDPOpt/bin/simpleFoam"
[andrew-pc:13376] *** Process received signal ***
[andrew-pc:13376] Signal: Floating point exception (8)
[andrew-pc:13376] Signal code:  (-6)
[andrew-pc:13376] Failing at address: 0x3e800003440
[andrew-pc:13376] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x364a0) [0x7fb65a8314a0]
[andrew-pc:13376] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35) [0x7fb65a831425]
[andrew-pc:13376] [ 2] /lib/x86_64-linux-gnu/libc.so.6(+0x364a0) [0x7fb65a8314a0]
[andrew-pc:13376] [ 3] /lib/x86_64-linux-gnu/libm.so.6(log+0x24) [0x7fb65adf7544]
[andrew-pc:13376] [ 4] /opt/openfoam222/platforms/linux64GccDPOpt/lib/libincompressibleRASModels.so(_ZN4Foam14incompressible47atmBoundaryLayerInletVelocityFvPatchVectorFieldC2ERKNS_7fvPatchERKNS_16DimensionedFieldINS_6VectorIdEENS_7volMeshEEERKNS_10dictionaryE+0x87d) [0x7fb65e5120ed]
[andrew-pc:13376] [ 5] /opt/openfoam222/platforms/linux64GccDPOpt/lib/libincompressibleRASModels.so(_ZN4Foam12fvPatchFieldINS_6VectorIdEEE31adddictionaryConstructorToTableINS_14incompressible47atmBoundaryLayerInletVelocityFvPatchVectorFieldEE3NewERKNS_7fvPatchERKNS_16DimensionedFieldIS2_NS_7volMeshEEERKNS_10dictionaryE+0x47) [0x7fb65e513e17]
[andrew-pc:13376] [ 6] simpleFoam(_ZN4Foam12fvPatchFieldINS_6VectorIdEEE3NewERKNS_7fvPatchERKNS_16DimensionedFieldIS2_NS_7volMeshEEERKNS_10dictionaryE+0x336) [0x441216]
[andrew-pc:13376] [ 7] simpleFoam(_ZN4Foam14GeometricFieldINS_6VectorIdEENS_12fvPatchFieldENS_7volMeshEE22GeometricBoundaryField9readFieldERKNS_16DimensionedFieldIS2_S4_EERKNS_10dictionaryE+0x120) [0x44b6c0]
[andrew-pc:13376] [ 8] simpleFoam(_ZN4Foam14GeometricFieldINS_6VectorIdEENS_12fvPatchFieldENS_7volMeshEE10readFieldsERKNS_10dictionaryE+0x82) [0x44c2e2]
[andrew-pc:13376] [ 9] simpleFoam(_ZN4Foam14GeometricFieldINS_6VectorIdEENS_12fvPatchFieldENS_7volMeshEE10readFieldsEv+0xd6) [0x44c686]
[andrew-pc:13376] [10] simpleFoam(_ZN4Foam14GeometricFieldINS_6VectorIdEENS_12fvPatchFieldENS_7volMeshEEC2ERKNS_8IOobjectERKNS_6fvMeshE+0x9c) [0x44c79c]
[andrew-pc:13376] [11] simpleFoam() [0x418c54]
[andrew-pc:13376] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7fb65a81c76d]
[andrew-pc:13376] [13] simpleFoam() [0x41b71d]
[andrew-pc:13376] *** End of error message ***
[0]  in "/opt/openfoam222/platforms/linux64GccDPOpt/bin/simpleFoam"
[andrew-pc:13373] *** Process received signal ***
[andrew-pc:13373] Signal: Floating point exception (8)
[andrew-pc:13373] Signal code:  (-6)
[andrew-pc:13373] Failing at address: 0x3e80000343d
[andrew-pc:13373] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x364a0) [0x7f90267174a0]
[andrew-pc:13373] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35) [0x7f9026717425]
[andrew-pc:13373] [ 2] /lib/x86_64-linux-gnu/libc.so.6(+0x364a0) [0x7f90267174a0]
[andrew-pc:13373] [ 3] /lib/x86_64-linux-gnu/libm.so.6(log+0x24) [0x7f9026cdd544]
[andrew-pc:13373] [ 4] /opt/openfoam222/platforms/linux64GccDPOpt/lib/libincompressibleRASModels.so(_ZN4Foam14incompressible47atmBoundaryLayerInletVelocityFvPatchVectorFieldC2ERKNS_7fvPatchERKNS_16DimensionedFieldINS_6VectorIdEENS_7volMeshEEERKNS_10dictionaryE+0x87d) [0x7f902a3f80ed]
[andrew-pc:13373] [ 5] /opt/openfoam222/platforms/linux64GccDPOpt/lib/libincompressibleRASModels.so(_ZN4Foam12fvPatchFieldINS_6VectorIdEEE31adddictionaryConstructorToTableINS_14incompressible47atmBoundaryLayerInletVelocityFvPatchVectorFieldEE3NewERKNS_7fvPatchERKNS_16DimensionedFieldIS2_NS_7volMeshEEERKNS_10dictionaryE+0x47) [0x7f902a3f9e17]
[andrew-pc:13373] [ 6] simpleFoam(_ZN4Foam12fvPatchFieldINS_6VectorIdEEE3NewERKNS_7fvPatchERKNS_16DimensionedFieldIS2_NS_7volMeshEEERKNS_10dictionaryE+0x336) [0x441216]
[andrew-pc:13373] [ 7] simpleFoam(_ZN4Foam14GeometricFieldINS_6VectorIdEENS_12fvPatchFieldENS_7volMeshEE22GeometricBoundaryField9readFieldERKNS_16DimensionedFieldIS2_S4_EERKNS_10dictionaryE+0x120) [0x44b6c0]
[andrew-pc:13373] [ 8] simpleFoam(_ZN4Foam14GeometricFieldINS_6VectorIdEENS_12fvPatchFieldENS_7volMeshEE10readFieldsERKNS_10dictionaryE+0x82) [0x44c2e2]
[andrew-pc:13373] [ 9] simpleFoam(_ZN4Foam14GeometricFieldINS_6VectorIdEENS_12fvPatchFieldENS_7volMeshEE10readFieldsEv+0xd6) [0x44c686]
[andrew-pc:13373] [10] simpleFoam(_ZN4Foam14GeometricFieldINS_6VectorIdEENS_12fvPatchFieldENS_7volMeshEEC2ERKNS_8IOobjectERKNS_6fvMeshE+0x9c) [0x44c79c]
[andrew-pc:13373] [11] simpleFoam() [0x418c54]
[andrew-pc:13373] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7f902670276d]
[andrew-pc:13373] [13] simpleFoam() [0x41b71d]
[andrew-pc:13373] *** End of error message ***
--------------------------------------------------------------------------
mpirun noticed that process rank 0 with PID 13373 on node andrew-pc exited on signal 8 (Floating point exception).
--------------------------------------------------------------------------
Any help would be greatly appreciated.

Cheers!
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Old   March 18, 2014, 13:26
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  #2
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Pete Bachant
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How is the mesh? Have you run checkMesh? Also, are the searchableBoxes for the actuator disks moved to the correct locations in the domain?
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