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July 27, 2015, 09:00 |
parallel running openfoam error
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#1 |
New Member
arough
Join Date: Mar 2013
Location: tunisia
Posts: 24
Rep Power: 13 |
Hi all,
I have the following error when I run my case in parallel: [0] #0 [3] #0 [2] #0 [1] #0 Foam::error:rintStack(Foam::Ostream&)Foam::error :rintStack(Foam::Ostream&)Foam::error:rintStac k(Foam::Ostream&)Foam::error:rintStack(Foam::Ost ream&) in "/opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [3] #1 Foam::sigFpe::sigHandler(int) in "/opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [0] #1 Foam::sigFpe::sigHandler(int) in "/opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [1] #1 Foam::sigFpe::sigHandler(int) in "/opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [2] #1 Foam::sigFpe::sigHandler(int) in "/opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [3] #2 in "/opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [0] #2 in "/opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [1] #2 in "/lib/x86_64-linux-gnu/libc.so.6" [3] #3 Foam::PCG::solve(Foam::Field<double>&, Foam::Field<double> const&, unsigned char) const in "/opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [2] #2 in "/lib/x86_64-linux-gnu/libc.so.6" [0] #3 Foam::PCG::solve(Foam::Field<double>&, Foam::Field<double> const&, unsigned char) const in "/lib/x86_64-linux-gnu/libc.so.6" [1] #3 Foam::PCG::solve(Foam::Field<double>&, Foam::Field<double> const&, unsigned char) const in "/opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [3] #4 Foam::GAMGSolver::solveCoarsestLevel(Foam::Field<d ouble>&, Foam::Field<double> const&) const in "/lib/x86_64-linux-gnu/libc.so.6" [2] #3 Foam::PCG::solve(Foam::Field<double>&, Foam::Field<double> const&, unsigned char) const in "/opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [3] #5 Foam::GAMGSolver::Vcycle(Foam::PtrList<Foam::lduMa trix::smoother> const&, Foam::Field<double>&, Foam::Field<double> const&, Foam::Field<double>&, Foam::Field<double>&, Foam::Field<double>&, Foam::PtrList<Foam::Field<double> >&, Foam::PtrList<Foam::Field<double> >&, unsigned char) const in "/opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [0] #4 Foam::GAMGSolver::solveCoarsestLevel(Foam::Field<d ouble>&, Foam::Field<double> const&) const in "/opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [1] #4 Foam::GAMGSolver::solveCoarsestLevel(Foam::Field<d ouble>&, Foam::Field<double> const&) const in "/opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [2] #4 Foam::GAMGSolver::solveCoarsestLevel(Foam::Field<d ouble>&, Foam::Field<double> const&) const in "/opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [3] #6 Foam::GAMGSolver::solve(Foam::Field<double>&, Foam::Field<double> const&, unsigned char) const in "/opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [2] #5 Foam::GAMGSolver::Vcycle(Foam::PtrList<Foam::lduMa trix::smoother> const&, Foam::Field<double>&, Foam::Field<double> const&, Foam::Field<double>&, Foam::Field<double>&, Foam::Field<double>&, Foam::PtrList<Foam::Field<double> >&, Foam::PtrList<Foam::Field<double> >&, unsigned char) const in "/opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [0] #5 Foam::GAMGSolver::Vcycle(Foam::PtrList<Foam::lduMa trix::smoother> const&, Foam::Field<double>&, Foam::Field<double> const&, Foam::Field<double>&, Foam::Field<double>&, Foam::Field<double>&, Foam::PtrList<Foam::Field<double> >&, Foam::PtrList<Foam::Field<double> >&, unsigned char) const in "/opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [1] #5 Foam::GAMGSolver::Vcycle(Foam::PtrList<Foam::lduMa trix::smoother> const&, Foam::Field<double>&, Foam::Field<double> const&, Foam::Field<double>&, Foam::Field<double>&, Foam::Field<double>&, Foam::PtrList<Foam::Field<double> >&, Foam::PtrList<Foam::Field<double> >&, unsigned char) const in "/opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [2] #6 Foam::GAMGSolver::solve(Foam::Field<double>&, Foam::Field<double> const&, unsigned char) const in "/opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [3] #7 Foam::fvMatrix<double>::solve(Foam::dictionary const&) in "/opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [0] #6 Foam::GAMGSolver::solve(Foam::Field<double>&, Foam::Field<double> const&, unsigned char) const in "/opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [1] #6 Foam::GAMGSolver::solve(Foam::Field<double>&, Foam::Field<double> const&, unsigned char) const in "/opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [0] #7 Foam::fvMatrix<double>::solve(Foam::dictionary const&) in "/opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [2] #7 Foam::fvMatrix<double>::solve(Foam::dictionary const&) in "/opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [1] #7 Foam::fvMatrix<double>::solve(Foam::dictionary const&) in "/opt/openfoam211/platforms/linux64GccDPOpt/lib/libfiniteVolume.so" [2] #8 in "/opt/openfoam211/platforms/linux64GccDPOpt/lib/libfiniteVolume.so" [1] #8 in "/opt/openfoam211/platforms/linux64GccDPOpt/lib/libfiniteVolume.so" [3] #8 in "/opt/openfoam211/platforms/linux64GccDPOpt/lib/libfiniteVolume.so" [0] #8 [2] in "/home/OpenFOAM/2.1.1/platforms/linux64GccDPOpt/bin/copFoam" [2] #9 __libc_start_main[0] in "/home/OpenFOAM/2.1.1/platforms/linux64GccDPOpt/bin/copFoam" [0] #9 __libc_start_main[1] in "/home/OpenFOAM/2.1.1/platforms/linux64GccDPOpt/bin/copFoam" [1] #9 __libc_start_main[3] in "/home/OpenFOAM/2.1.1/platforms/linux64GccDPOpt/bin/copFoam" [3] #9 __libc_start_main in "/lib/x86_64-linux-gnu/libc.so.6" [2] #10 in "/lib/x86_64-linux-gnu/libc.so.6" [0] #10 in "/lib/x86_64-linux-gnu/libc.so.6" [1] #10 in "/lib/x86_64-linux-gnu/libc.so.6" [3] #10 [2] in "/home/OpenFOAM/2.1.1/platforms/linux64GccDPOpt/bin/copFoam" [PC:08116] *** Process received signal *** [PC:08116] Signal: Floating point exception (8) [PC:08116] Signal code: (-6) [PC:08116] Failing at address: 0x3e800001fb4 [PC:08116] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x364a0) [0x7f6dc2f4f4a0] [PC:08116] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35) [0x7f6dc2f4f425] [PC:08116] [ 2] /lib/x86_64-linux-gnu/libc.so.6(+0x364a0) [0x7f6dc2f4f4a0] [PC:08116] [ 3] /opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZNK4Foam3PCG5solveERNS_5FieldIdEER KS2_h+0xd0d) [0x7f6dc3f8159d] [PC:08116] [ 4] /opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZNK4Foam10GAMGSolver18solveCoarses tLevelERNS_5FieldIdEERKS2_+0x4ab) [0x7f6dc3f90f5b] [PC:08116] [ 5] /opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZNK4Foam10GAMGSolver6VcycleERKNS_7 PtrListINS_9lduMatrix8smootherEEERNS_5FieldIdEERKS 8_S9_S9_S9_RNS1_IS8_EESD_h+0xaaa) [0x7f6dc3f9279a] [PC:08116] [ 6] /opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZNK4Foam10GAMGSolver5solveERNS_5Fi eldIdEERKS2_h+0x4c3) [0x7f6dc3f93c23] [PC:08116] [ 7] /opt/openfoam211/platforms/linux64GccDPOpt/lib/libfiniteVolume.so(_ZN4Foam8fvMatrixIdE5solveERKNS _10dictionaryE+0x137) [0x7f6dc4b91307] [PC:08116] [ 8] copFoam() [0x428e6a] [PC:08116] [ 9] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7f6dc2f3a76d] [PC:08116] [10] copFoam() [0x42b45d] [PC:08116] *** End of error message *** [1] in "/home/OpenFOAM/2.1.1/platforms/linux64GccDPOpt/bin/copFoam" [PC:08115] *** Process received signal *** [PC:08115] Signal: Floating point exception (8) [PC:08115] Signal code: (-6) [PC:08115] Failing at address: 0x3e800001fb3 [3] in "/home/OpenFOAM/2.1.1/platforms/linux64GccDPOpt/bin/copFoam" [PC:08117] *** Process received signal *** [PC:08117] Signal: Floating point exception (8) [PC:08117] Signal code: (-6) [PC:08117] Failing at address: 0x3e800001fb5 [PC:08115] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x364a0) [0x7ff94f90a4a0] [PC:08115] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35) [0x7ff94f90a425] [aPC:08115] [ 2] /lib/x86_64-linux-gnu/libc.so.6(+0x364a0) [0x7ff94f90a4a0] [PC:08115] [ 3] /opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZNK4Foam3PCG5solveERNS_5FieldIdEER KS2_h+0xd0d) [0x7ff95093c59d] [PC:08115] [ 4] /opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZNK4Foam10GAMGSolver18solveCoarses tLevelERNS_5FieldIdEERKS2_+0x4ab) [0x7ff95094bf5b] [PC:08115] [ 5] /opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZNK4Foam10GAMGSolver6VcycleERKNS_7 PtrListINS_9lduMatrix8smootherEEERNS_5FieldIdEERKS 8_S9_S9_S9_RNS1_IS8_EESD_h+0xaaa) [0x7ff95094d79a] [PC:08115] [ 6] /opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZNK4Foam10GAMGSolver5solveERNS_5Fi eldIdEERKS2_h+0x4c3) [0x7ff95094ec23] [PC:08115] [ 7] /opt/openfoam211/platforms/linux64GccDPOpt/lib/libfiniteVolume.so(_ZN4Foam8fvMatrixIdE5solveERKNS _10dictionaryE+0x137) [0x7ff95154c307] [PC:08115] [ 8] copFoam() [0x428e6a] [PC:08115] [ 9] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7ff94f8f576d] [PC:08115] [10] copFoam() [0x42b45d] [PC:08115] *** End of error message *** [PC:08117] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x364a0) [0x7fcdf53a64a0] [PC:08117] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35) [0x7fcdf53a6425] [-PC:08117] [ 2] /lib/x86_64-linux-gnu/libc.so.6(+0x364a0) [0x7fcdf53a64a0] [PC:08117] [ 3] /opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZNK4Foam3PCG5solveERNS_5FieldIdEER KS2_h+0xd0d) [0x7fcdf63d859d] [PC:08117] [ 4] /opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZNK4Foam10GAMGSolver18solveCoarses tLevelERNS_5FieldIdEERKS2_+0x4ab) [0x7fcdf63e7f5b] [PC:08117] [ 5] /opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZNK4Foam10GAMGSolver6VcycleERKNS_7 PtrListINS_9lduMatrix8smootherEEERNS_5FieldIdEERKS 8_S9_S9_S9_RNS1_IS8_EESD_h+0xaaa) [0x7fcdf63e979a] [PC:08117] [ 6] /opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZNK4Foam10GAMGSolver5solveERNS_5Fi eldIdEERKS2_h+0x4c3) [0x7fcdf63eac23] [PC:08117] [ 7] /opt/openfoam211/platforms/linux64GccDPOpt/lib/libfiniteVolume.so(_ZN4Foam8fvMatrixIdE5solveERKNS _10dictionaryE+0x137) [0x7fcdf6fe8307] [PC:08117] [ 8] copFoam() [0x428e6a] [-PC:08117] [ 9] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7fcdf539176d] [PC:08117] [10] copFoam() [0x42b45d] [PC:08117] *** End of error message *** [0] in "/home/OpenFOAM/2.1.1/platforms/linux64GccDPOpt/bin/copFoam" [PC:08114] *** Process received signal *** [PC:08114] Signal: Floating point exception (8) [PC:08114] Signal code: (-6) [PC:08114] Failing at address: 0x3e800001fb2 [PC:08114] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x364a0) [0x7f79e219e4a0] [PC:08114] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35) [0x7f79e219e425] [PC:08114] [ 2] /lib/x86_64-linux-gnu/libc.so.6(+0x364a0) [0x7f79e219e4a0] [PC:08114] [ 3] /opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZNK4Foam3PCG5solveERNS_5FieldIdEER KS2_h+0xd0d) [0x7f79e31d059d] [PC:08114] [ 4] /opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZNK4Foam10GAMGSolver18solveCoarses tLevelERNS_5FieldIdEERKS2_+0x4ab) [0x7f79e31dff5b] [PC:08114] [ 5] /opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZNK4Foam10GAMGSolver6VcycleERKNS_7 PtrListINS_9lduMatrix8smootherEEERNS_5FieldIdEERKS 8_S9_S9_S9_RNS1_IS8_EESD_h+0xaaa) [0x7f79e31e179a] [PC:08114] [ 6] /opt/openfoam211/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZNK4Foam10GAMGSolver5solveERNS_5Fi eldIdEERKS2_h+0x4c3) [0x7f79e31e2c23] [PC:08114] [ 7] /opt/openfoam211/platforms/linux64GccDPOpt/lib/libfiniteVolume.so(_ZN4Foam8fvMatrixIdE5solveERKNS _10dictionaryE+0x137) [0x7f79e3de0307] [PC:08114] [ 8] copFoam() [0x428e6a] [PC:08114] [ 9] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7f79e218976d] [PC:08114] [10] copFoam() [0x42b45d] [PC:08114] *** End of error message *** -------------------------------------------------------------------------- mpirun noticed that process rank 2 with PID 8116 on node PC exited on signal 8 (Floating point exception). -------------------------------------------------------------------------- I could not find where is the problem Any help or suggestion is greatly appreciated. |
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July 28, 2015, 14:21 |
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#2 |
Senior Member
Saideep
Join Date: Apr 2015
Location: INDIA
Posts: 203
Rep Power: 11 |
hi;
could you run the simulation on 1 node? If that works then this shall work normal else there is some interesting problem. Else there could be some error in the code or case keywords. Saideep |
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