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September 8, 2011, 11:02 |
error when running icoFoam
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#1 |
New Member
Hsingtzu Wu
Join Date: Feb 2011
Posts: 24
Rep Power: 15 |
Hi
I followed the instruction at http://openfoamwiki.net/index.php/Ho...ure_to_icoFoam to add temperature to icoFoam. I called the new solver "my_icoFoam." However, when I ran the solver, I got the following error message after t=0.195. I am wondering if anyone knows what they mean and how to solve this problem.Thanks! Code:
#0 Foam::error::printStack(Foam::Ostream&) in "/home/uiuc/OpenFOAM/uiuc-2.0.1/platforms/linuxGccDPOpt/lib/libOpenFOAM.so" #1 Foam::sigFpe::sigHandler(int) in "/home/uiuc/OpenFOAM/uiuc-2.0.1/platforms/linuxGccDPOpt/lib/libOpenFOAM.so" #2 Uninterpreted: #3 Foam::PBiCG::solve(Foam::Field<double>&, Foam::Field<double> const&, unsigned char) const in "/home/uiuc/OpenFOAM/uiuc-2.0.1/platforms/linuxGccDPOpt/lib/libOpenFOAM.so" #4 Foam::fvMatrix<double>::solve(Foam::dictionary const&) in "/home/uiuc/OpenFOAM/uiuc-2.0.1/platforms/linuxGccDPOpt/lib/libfiniteVolume.so" #5 in "/opt/openfoam201/platforms/linuxGccDPOpt/bin/my_icoFoam" #6 in "/opt/openfoam201/platforms/linuxGccDPOpt/bin/my_icoFoam" #7 __libc_start_main in "/lib/tls/i686/cmov/libc.so.6" #8 in "/opt/openfoam201/platforms/linuxGccDPOpt/bin/my_icoFoam" Floating point exception Last edited by hsingtzu; September 8, 2011 at 11:44. |
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September 9, 2011, 10:53 |
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#2 |
Senior Member
Daniel P. Combest
Join Date: Mar 2009
Location: St. Louis, USA
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What happened before the error message?
Code:
Floating point exception Dan |
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November 30, 2011, 15:58 |
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#3 |
New Member
Hsingtzu Wu
Join Date: Feb 2011
Posts: 24
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Thanks, chegdan.
by accident I lost the original code, so I redid it. and it did not work. I decreased dt, and the courant number did decrease from Code:
Time = 0.005 Courant Number mean: 7.1527 max: 5.99709e+298 Code:
Time = 5e-60 Courant Number mean: 7.1527e-57 max: 5.99709e+241 I was wondering if I should did some other change... |
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November 30, 2011, 16:04 |
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#4 | |
Senior Member
Daniel P. Combest
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Quote:
Dan |
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December 1, 2011, 11:15 |
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#5 |
New Member
Hsingtzu Wu
Join Date: Feb 2011
Posts: 24
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Hello Daniel
Thanks for the quick reply my blockMeshDict is Code:
/*--------------------------------*- C++ -*----------------------------------*\ | ========= | | | \\ / F ield | OpenFOAM: The Open Source CFD Toolbox | | \\ / O peration | Version: 2.0.1 | | \\ / A nd | Web: www.OpenFOAM.com | | \\/ M anipulation | | \*---------------------------------------------------------------------------*/ FoamFile { version 2.0; format ascii; class dictionary; object blockMeshDict; } // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * // convertToMeters 0.1; vertices #codeStream { codeInclude #{ #include "pointField.H" #}; code #{ pointField points(19); points[0] = point(0.5, 0, -133); points[1] = point(1, 0, -133); points[2] = point(2, 0, -133); points[3] = point(2, 0.707107, -133); points[4] = point(0.707107, 0.707107, -133); points[5] = point(0.353553, 0.353553, -133); points[6] = point(2, 2, -133); points[7] = point(0.707107, 2, -133); points[8] = point(0, 2, -133); points[9] = point(0, 1, -133); points[10] = point(0, 0.5, -133); points[11] = point(-0.5, 0, -133); points[12] = point(-1, 0, -133); points[13] = point(-2, 0, -133); points[14] = point(-2, 0.707107, -133); points[15] = point(-0.707107, 0.707107, -133); points[16] = point(-0.353553, 0.353553, -133); points[17] = point(-2, 2, -133); points[18] = point(-0.707107, 2, -133); // Duplicate z points label sz = points.size(); points.setSize(3*sz); for (label i = 0; i < sz; i++) { const point& pt = points[i]; points[i+sz] = point(pt.x(), pt.y(), 0); } for (label i = 0; i < sz; i++) { const point& pt = points[i]; points[i+sz+sz] = point(pt.x(), pt.y(), -pt.z()); } os << points; #}; }; blocks ( hex (5 4 9 10 24 23 28 29) (10 10 1) simpleGrading (1 1 1) hex (0 1 4 5 19 20 23 24) (10 10 1) simpleGrading (1 1 1) hex (1 2 3 4 20 21 22 23) (20 10 1) simpleGrading (1 1 1) hex (4 3 6 7 23 22 25 26) (20 20 1) simpleGrading (1 1 1) hex (9 4 7 8 28 23 26 27) (10 20 1) simpleGrading (1 1 1) hex (15 16 10 9 34 35 29 28) (10 10 1) simpleGrading (1 1 1) hex (12 11 16 15 31 30 35 34) (10 10 1) simpleGrading (1 1 1) hex (13 12 15 14 32 31 34 33) (20 10 1) simpleGrading (1 1 1) hex (14 15 18 17 33 34 37 36) (20 20 1) simpleGrading (1 1 1) hex (15 9 8 18 34 28 27 37) (10 20 1) simpleGrading (1 1 1) hex (24 23 28 29 43 42 47 48) (10 10 1) simpleGrading (1 1 1) ); edges ( arc 0 5 (0.469846 0.17101 -0.5) arc 5 10 (0.17101 0.469846 -0.5) arc 1 4 (0.939693 0.34202 -0.5) arc 4 9 (0.34202 0.939693 -0.5) arc 19 24 (0.469846 0.17101 0.5) arc 24 29 (0.17101 0.469846 0.5) arc 20 23 (0.939693 0.34202 0.5) arc 23 28 (0.34202 0.939693 0.5) arc 11 16 (-0.469846 0.17101 -0.5) arc 16 10 (-0.17101 0.469846 -0.5) arc 12 15 (-0.939693 0.34202 -0.5) arc 15 9 (-0.34202 0.939693 -0.5) arc 30 35 (-0.469846 0.17101 0.5) arc 35 29 (-0.17101 0.469846 0.5) arc 31 34 (-0.939693 0.34202 0.5) arc 34 28 (-0.34202 0.939693 0.5) ); boundary ( down { // type patch; type symmetryPlane; faces ( (0 1 20 19) (1 2 21 20) (12 11 30 31) (13 12 31 32) ); } right { // type symmetryPlane; type patch; faces ( (2 3 22 21) (3 6 25 22) ); } up { // type patch; type symmetryPlane; faces ( (7 8 27 26) (6 7 26 25) (8 18 37 27) (18 17 36 37) ); } left { // type symmetryPlane; type patch; faces ( (14 13 32 33) (17 14 33 36) ); } cylinder { type patch; faces ( (10 5 24 29) (5 0 19 24) (16 10 29 35) (11 16 35 30) ); } ); mergePatchPairs ( ); // ************************************************************************* // Code:
/*--------------------------------*- C++ -*----------------------------------*\ | ========= | | | \\ / F ield | OpenFOAM: The Open Source CFD Toolbox | | \\ / O peration | Version: 2.0.1 | | \\ / A nd | Web: www.OpenFOAM.com | | \\/ M anipulation | | \*---------------------------------------------------------------------------*/ FoamFile { version 2.0; format ascii; class volScalarField; object p; } // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * // dimensions [0 2 -2 0 0 0 0]; internalField uniform 0; boundaryField { down { type symmetryPlane; } right { type fixedValue; value uniform 0; } up { type symmetryPlane; } left { type zeroGradient; } cylinder { type zeroGradient; } defaultFaces { type empty; } } // ************************************************************************* // Code:
/*--------------------------------*- C++ -*----------------------------------*\ | ========= | | | \\ / F ield | OpenFOAM: The Open Source CFD Toolbox | | \\ / O peration | Version: 2.0.1 | | \\ / A nd | Web: www.OpenFOAM.com | | \\/ M anipulation | | \*---------------------------------------------------------------------------*/ FoamFile { version 2.0; format ascii; class volVectorField; location "0"; object U; } // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * // dimensions [0 1 -1 0 0 0 0]; internalField uniform (1 0 0); boundaryField { down { type symmetryPlane; } right { type zeroGradient; } up { type symmetryPlane; } left { type fixedValue; value uniform (1 0 0); } cylinder { type zeroGradient; } defaultFaces { type empty; } } // ************************************************************************* // Code:
/*--------------------------------*- C++ -*----------------------------------*\ | ========= | | | \\ / F ield | OpenFOAM: The Open Source CFD Toolbox | | \\ / O peration | Version: 2.0.1 | | \\ / A nd | Web: www.OpenFOAM.com | | \\/ M anipulation | | \*---------------------------------------------------------------------------*/ FoamFile { version 2.0; format ascii; class volScalarField; object p; } // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * // dimensions [0 0 0 1 0 0 0]; internalField uniform 300; boundaryField { down { type symmetryPlane; } right { type zeroGradient; } up { type symmetryPlane; } left { type zeroGradient; } cylinder { type fixedValue; value uniform 400; } defaultFaces { type empty; } } // ************************************************************************* // |
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December 1, 2011, 12:58 |
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#6 |
Senior Member
Daniel P. Combest
Join Date: Mar 2009
Location: St. Louis, USA
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hsingtzu,
I tried your case and there are several issues. 1. I rebuilt your mesh from the blockMeshDict you provided and it looks like the image below. is there something more that you do to create the mesh? you might want to try uploading your whole case to say dropbox (dropbox referral http://db.tt/hbaGBi5) and then post the link here when you put the case in the public folder on your dropbox 2. after running the checkMesh -allTopology -allGeometry command, I get some nasty messages. Code:
/*---------------------------------------------------------------------------*\ | ========= | | | \\ / F ield | OpenFOAM: The Open Source CFD Toolbox | | \\ / O peration | Version: 2.0.x | | \\ / A nd | Web: www.OpenFOAM.org | | \\/ M anipulation | | \*---------------------------------------------------------------------------*/ Build : 2.0.x-5f38cb9e6919 Exec : checkMesh -allTopology -allGeometry Date : Dec 01 2011 Time : 11:42:32 Host : aris PID : 3637 Case : /home/dcombest/OpenFOAM/dcombest-2.0.x/run/myIcoFoam/case2 nProcs : 1 sigFpe : Enabling floating point exception trapping (FOAM_SIGFPE). fileModificationChecking : Monitoring run-time modified files using timeStampMaster allowSystemOperations : Allowing user-supplied system call operations // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * // Create time Create polyMesh for time = 0 Time = 0 Mesh stats points: 4343 faces: 8430 internal faces: 4170 cells: 2100 boundary patches: 6 point zones: 0 face zones: 0 cell zones: 0 Overall number of cells of each type: hexahedra: 2100 prisms: 0 wedges: 0 pyramids: 0 tet wedges: 0 tetrahedra: 0 polyhedra: 0 Checking topology... Boundary definition OK. ***Total number of faces on empty patches is not divisible by the number of cells in the mesh. Hence this mesh is not 1D or 2D. Cell to face addressing OK. Point usage OK. Upper triangular ordering OK. Face vertices OK. Topological cell zip-up check OK. Face-face connectivity OK. <<Writing 6 cells with with two non-boundary faces to set twoInternalFacesCells Number of regions: 1 (OK). Checking patch topology for multiply connected surfaces ... Patch Faces Points Surface topology Bounding box down 60 124 ok (non-closed singly connected) (-0.2 0 -13.3) (0.2 0 0) right 30 62 ok (non-closed singly connected) (0.2 0 -13.3) (0.2 0.2 0) up 60 122 ok (non-closed singly connected) (-0.2 0.2 -13.3) (0.2 0.2 0) left 30 62 ok (non-closed singly connected) (-0.2 0 -13.3) (-0.2 0.2 0) cylinder 40 82 ok (non-closed singly connected) (-5.84259 -5.80624 -13.3) (5.84259 5.84259 0.0500826) defaultFaces 4040 4262 ok (non-closed singly connected) (-5.86406 -5.80624 -13.3) (5.86406 5.86406 13.3) Checking geometry... Overall domain bounding box (-5.86406 -5.80624 -13.3) (5.86406 5.86406 13.3) Mesh (non-empty, non-wedge) directions (0 0 0) Mesh (non-empty) directions (0 0 0) ***Number of edges not aligned with or perpendicular to non-empty directions: 5969 <<Writing 2729 points on non-aligned edges to set nonAlignedEdges Boundary openness (4.18677e-19 1.23902e-16 -3.24945e-19) OK. Max cell openness = 3.4632e-14 OK. Max aspect ratio = 0 OK. Minumum face area = 1.85615e-05. Maximum face area = 25.9195. Face area magnitudes OK. Min volume = 2e-300. Max volume = 0.033485. Total volume = 5.34265. Cell volumes OK. Mesh non-orthogonality Max: 180 average: 74.3256 *Number of severely non-orthogonal faces: 738. ***Number of non-orthogonality errors: 1654. <<Writing 2392 non-orthogonal faces to set nonOrthoFaces ***Error in face pyramids: 4522 faces are incorrectly oriented. <<Writing 3090 faces with incorrect orientation to set wrongOrientedFaces ***Max skewness = 362.256, 1072 highly skew faces detected which may impair the quality of the results <<Writing 1072 skew faces to set skewFaces Coupled point location match (average 0) OK. ***Error in face tets: 8398 faces with low quality or negative volume decomposition tets. <<Writing 3508 faces with low quality or negative volume decomposition tets to set lowQualityTetFaces Min/max edge length = 0.00382683 13.3 OK. *There are 720 faces with concave angles between consecutive edges. Max concave angle = 90 degrees. <<Writing 720 faces with concave angles to set concaveFaces Face flatness (1 = flat, 0 = butterfly) : average = 0.99583 min = 0.227895 *There are 46 faces with ratio between projected and actual area < 0.8 Minimum ratio (minimum flatness, maximum warpage) = 0.227895 <<Writing 46 warped faces to set warpedFaces Cell determinant (wellposedness) : minimum: 0 average: 7.25286e-07 ***Cells with small determinant found, number of cells: 2100 <<Writing 2100 under-determined cells to set underdeterminedCells ***Concave cells (using face planes) found, number of cells: 1010 <<Writing 1010 concave cells to set concaveCells Failed 7 mesh checks. End |
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December 1, 2011, 16:43 |
simpleFoam
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#7 |
New Member
mohsen cheraghi
Join Date: Jun 2010
Location: Switzerland
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Hi
I think it returns to your BC. you used zero gradient boundary for velocity on the cylinder which should be fixedValue of (0 0 0) to provide obstruction. But if you insist on using this BC for the cylinder you must change your solver to simpleFoam. Good luck |
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December 2, 2011, 11:01 |
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#8 | |
Senior Member
Daniel P. Combest
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Quote:
Also, for walls in your geometry...the patch type in the blockMeshDict should be wall and not patch. * By setting a zeroGradient for velocity at the cylinder patch with patch type "patch", it is creating an outflow condition (if that is what you wanted). * For a no-slip boundary, you will need a fixedValue (like you have), but with a patch type of wall. Hope this helps you. |
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December 2, 2011, 11:48 |
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#9 |
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mauricio
Join Date: Jun 2011
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i'll flood the topic and ask u to work on the mesh quality. Can we have a look at your (desired) mesh?
tried ur dict and i got same pic as daniel Last edited by calim_cfd; December 2, 2011 at 12:05. |
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December 5, 2011, 12:48 |
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#10 |
New Member
Hsingtzu Wu
Join Date: Feb 2011
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Dear All
Thanks for all the comments. I should have double checked the geometry before copying it from OpenFOAM-2.0.1/run/tutorials/basic/potentialFoam/cylinder/constant/polyMesh. Actually I want to do my_icoFoam on model of "a cylinder inside a box" (please see the attached pic 1). I use the blockMeshDict from OpenFOAM-1.7.1 and it works. However, when I try a 3D box with 16 cylinders (4x4) inside (please see the attached pic 2),it gives me the following error message. (I have tried dt=0.0005 and dt= 0.000005. Both give me error messages. the following is the one with dt =0.000005. I have replaced "patch" with "wall" and set the BC of cylinder as "fixedValue; uniform (0 0 0);") Code:
Time = 0.005355 Courant Number mean: 6.61656e+94 max: 3.14367e+96 DILUPBiCG: Solving for Ux, Initial residual = 0.99999, Final residual = 2.96883e-06, No Iterations 135 DILUPBiCG: Solving for Uy, Initial residual = 0.999964, Final residual = 8.35209e-06, No Iterations 139 DILUPBiCG: Solving for Uz, Initial residual = 0.99999, Final residual = 6.06657e-06, No Iterations 88 #0 Foam::error::printStack(Foam::Ostream&) in "/home/uiuc/OpenFOAM/uiuc-2.0.1/platforms/linuxGccDPOpt/lib/libOpenFOAM.so" #1 Foam::sigFpe::sigHandler(int) in "/home/uiuc/OpenFOAM/uiuc-2.0.1/platforms/linuxGccDPOpt/lib/libOpenFOAM.so" #2 Uninterpreted: #3 Foam::PCG::solve(Foam::Field<double>&, Foam::Field<double> const&, unsigned char) const in "/home/uiuc/OpenFOAM/uiuc-2.0.1/platforms/linuxGccDPOpt/lib/libOpenFOAM.so" #4 Foam::fvMatrix<double>::solve(Foam::dictionary const&) in "/home/uiuc/OpenFOAM/uiuc-2.0.1/platforms/linuxGccDPOpt/lib/libfiniteVolume.so" #5 in "/opt/openfoam201/platforms/linuxGccDPOpt/bin/my_icoFoam" #6 in "/opt/openfoam201/platforms/linuxGccDPOpt/bin/my_icoFoam" #7 __libc_start_main in "/lib/tls/i686/cmov/libc.so.6" #8 in "/opt/openfoam201/platforms/linuxGccDPOpt/bin/my_icoFoam" Floating point exception 0/U can be found at http://dl.dropbox.com/u/20517550/4x4_3D/0/U 0/T can be found at http://dl.dropbox.com/u/20517550/4x4_3D/0/T constant/polyMesh/boundary can be found at http://dl.dropbox.com/u/20517550/4x4...yMesh/boundary please let me know if you would like to have access to some other files. Thanks Hsingtzu |
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December 5, 2011, 13:14 |
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#11 |
Senior Member
Daniel P. Combest
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ok, starting to get somewhere.
1. you have some velocity inlets and those need to be type patch, outlets also need to be type patch instead of wall. 2. at pressure outlets, you need a fixedValue condition of type patch. 3. if you zip up everything in one directory and then provide the link to the zip file then we could try it. 4. I solve the same problem all the time with randomly packed cylinders http://www.personal.psu.edu/dab143/O...ombest2_ab.pdf |
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December 5, 2011, 13:14 |
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#12 | |
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mauricio
Join Date: Jun 2011
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Quote:
also(then) try setting the initial step to sth rly low, and check the first occurrence of co number and make sure it is below 1. And make sure ur getting fixed time steps by setting runTimeModifiable=no; Code:
startTime 0.0001; stopAt endTime; endTime 10; deltaT 0.00001; ... runTimeModifiable no; maxCo 1; hope it helps u get ur solver working.. |
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December 14, 2011, 11:28 |
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#13 |
New Member
Hsingtzu Wu
Join Date: Feb 2011
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Dear calim_cfd and chegdan
Thanks for your comments. I really appreciate your time and help. I am sorry for the late reply. I have been working on my final project which is due this Sun. This means that I will work on this problem next week. |
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February 20, 2012, 12:38 |
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#14 |
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Hsingtzu Wu
Join Date: Feb 2011
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To Chegdan:
Thanks for your reply. I have changed the types of all boundary conditions to "patch". You may find the file at http://dl.dropbox.com/u/20517550/4x4.zip I appreciate your time and help. To calim-cfd: Thanks for your suggestions. Hsingtzu Last edited by hsingtzu; February 20, 2012 at 13:25. |
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February 20, 2012, 13:30 |
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#15 |
Senior Member
Daniel P. Combest
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Hsingtzu,
Ok..I glanced at the case file and you have some problems. You have an inlet velocity and then many outflow (zeroGradient) boundary conditions for the velocity field. If you are modeling the flow around bluff bodies then you need some no-slip (ie fixedValue ) boundary conditions in there as was suggested by mohsen. I have something running on my workstation so I can't switch over and try your case immediately. Good Luck. Dan |
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March 1, 2012, 22:43 |
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#16 |
New Member
Hsingtzu Wu
Join Date: Feb 2011
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Thanks for your kind suggestion, Dan.
I should have paid attention to mohsen cheraghi's suggestion. Have a nice weekend. Hsingtzu |
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March 14, 2012, 10:11 |
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#17 |
New Member
Hsingtzu Wu
Join Date: Feb 2011
Posts: 24
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Hi
I was trying to apply icoFoam to my model, but the courant # blew up at the first time step. Code:
Time = 5e-05 Courant Number mean: 2.385e+286 max: 4.39836e+286 http://dl.dropbox.com/u/20517550/cell_3D.zip and I would appreciate any help. Thanks Hsingtzu |
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March 14, 2012, 13:23 |
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#18 |
Senior Member
mauricio
Join Date: Jun 2011
Posts: 172
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first notes
a checkMesh reports: Code:
Checking geometry... Overall domain bounding box (-0.0063 -0.0063 0) (0.0063 0.0063 0.0098) Mesh (non-empty, non-wedge) directions (1 1 1) Mesh (non-empty) directions (1 1 1) Boundary openness (3.40255e-17 -7.68602e-17 1.21815e-16) OK. ***High aspect ratio cells found, Max aspect ratio: 5.83792e+193, number of cells 5000 <<Writing 5000 cells with high aspect ratio to set highAspectRatioCells Minumum face area = 7.11491e-08. Maximum face area = 1.53781e-06. Face area magnitudes OK. Min volume = 2e-300. Max volume = 2e-300. Total volume = 1e-296. Cell volumes OK. Mesh non-orthogonality Max: 180 average: 170.484 ***Number of non-orthogonality errors: 13600. <<Writing 13600 non-orthogonal faces to set nonOrthoFaces ***Error in face pyramids: 30000 faces are incorrectly oriented. <<Writing 16400 faces with incorrect orientation to set wrongOrientedFaces Max skewness = 0.548939 OK. Coupled point location match (average 0) OK. i can see the mesh in paraview and it doesnt look that bad.. maybe you need to review the ordering of faces in blockMeshDict and if your mesh turns out still being bad then you'll need limited schemes and relaxation factors... get your mesh right first.. i dont have time to debugg yout blockmeshdict sry
__________________
Best Regards /calim "Elune will grant us the strength" |
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March 15, 2012, 15:33 |
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#19 |
New Member
Hsingtzu Wu
Join Date: Feb 2011
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Hi calim_cfd
Thanks for mentioning "checkMesh". I did not think about it. Now I am working on the face pyramids. You mentioned that "the physics of your case is not properly set". Would you please give me some directions to work on? I used the cavity example of the official guide to make this model. Thanks Hsingtzu |
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March 16, 2012, 16:03 |
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#20 |
New Member
Hsingtzu Wu
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Then I solved the problem by giving up blockMesh thing and adopting gmsh.
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