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Old   April 4, 2012, 10:36
Default Memory allocation error
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Samuele Z
Join Date: Oct 2009
Location: Mozzate - Co - Italy
Posts: 520
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Dear All,

when I try to compile my solver I get this error:

Code:
lab@lab-laptop:~/Documenti/cases_OF/OF_case09_steady_vs_unsteady/unsteady_new_solver$ buoyantPimpleFoam_Epta 
/*---------------------------------------------------------------------------*\
| =========                 |                                                 |
| \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox           |
|  \\    /   O peration     | Version:  2.1.0                                 |
|   \\  /    A nd           | Web:      www.OpenFOAM.org                      |
|    \\/     M anipulation  |                                                 |
\*---------------------------------------------------------------------------*/
Build  : 2.1.0-0bc225064152
Exec   : buoyantPimpleFoam_Epta
Date   : Apr 04 2012
Time   : 16:04:24
Host   : "lab-laptop"
PID    : 8695
Case   : /home/lab/Documenti/cases_OF/OF_case09_steady_vs_unsteady/unsteady_new_solver
nProcs : 1
sigFpe : Enabling floating point exception trapping (FOAM_SIGFPE).
fileModificationChecking : Monitoring run-time modified files using timeStampMaster
allowSystemOperations : Disallowing user-supplied system call operations

// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
Create time

Create mesh for time = 0


Reading g
Reading thermophysical properties

Selecting thermodynamics package hRhoThermo<pureMixture<constTransport<specieThermo<hConstThermo<perfectGas>>>>>
Reading field U

Reading/calculating face flux field phi

Creating turbulence model

Selecting turbulence model type RASModel
Selecting RAS turbulence model kEpsilon
--> Upgrading k to employ run-time selectable wall functions
    Backup original k to k.old
    Writing updated k
--> Upgrading epsilon to employ run-time selectable wall functions
    Backup original epsilon to epsilon.old
    Writing updated epsilon
--> Creating mut to employ run-time selectable wall functions
    Writing new mut
--> Creating alphat to employ run-time selectable wall functions
    Writing new alphat
kEpsilonCoeffs
{
    Cmu             0.09;
    C1              1.44;
    C2              1.92;
    C3              -0.33;
    sigmak          1;
    sigmaEps        1.3;
    Prt             1;
}

Calculating field g.h

Reading field p_rgh

Creating field dpdt

Creating field kinetic energy K

Creating field source list from sourcesProperties

Selecting source model type vectorExplicitSetValue
    Source: air_infinite
    - selecting cells using cellSet air_infinite
    - selected 2730 cell(s) with volume 1.2

Courant Number mean: 0.00561315 max: 5.02789

PIMPLE: no residual control data found. Calculations will employ 2 corrector loops


Starting time loop

Courant Number mean: 0.000837302 max: 0.75
deltaT = 0.0298336
Time = 0.0298336

diagonal:  Solving for rho, Initial residual = 0, Final residual = 0, No Iterations 0
PIMPLE: iteration 1
DILUPBiCG:  Solving for Ux, Initial residual = 1, Final residual = 0.00790783, No Iterations 9
DILUPBiCG:  Solving for Uy, Initial residual = 1, Final residual = 0.00680865, No Iterations 9
DILUPBiCG:  Solving for Uz, Initial residual = 1, Final residual = 0.00501205, No Iterations 4
DILUPBiCG:  Solving for Ux, Initial residual = 0.862811, Final residual = 0.00698018, No Iterations 9
DILUPBiCG:  Solving for Uy, Initial residual = 0.9982, Final residual = 0.00717148, No Iterations 6
DILUPBiCG:  Solving for Uz, Initial residual = 1, Final residual = 0.00669064, No Iterations 4
DILUPBiCG:  Solving for h, Initial residual = 1, Final residual = 0.00623696, No Iterations 9
GAMG:  Solving for p_rgh, Initial residual = 0.784028, Final residual = 0.00782346, No Iterations 26
GAMG:  Solving for p_rgh, Initial residual = 0.309003, Final residual = 0.00297538, No Iterations 4
GAMG:  Solving for p_rgh, Initial residual = 0.013951, Final residual = 0.000138292, No Iterations 15
diagonal:  Solving for rho, Initial residual = 0, Final residual = 0, No Iterations 0
time step continuity errors : sum local = 2.73457e-06, global = 6.01253e-07, cumulative = 6.01253e-07
GAMG:  Solving for p_rgh, Initial residual = 0.36485, Final residual = 0.00335559, No Iterations 23
GAMG:  Solving for p_rgh, Initial residual = 0.372822, Final residual = 0.00354448, No Iterations 4
GAMG:  Solving for p_rgh, Initial residual = 0.0297191, Final residual = 0.000291083, No Iterations 14
diagonal:  Solving for rho, Initial residual = 0, Final residual = 0, No Iterations 0
time step continuity errors : sum local = 2.18813e-06, global = 4.60073e-07, cumulative = 1.06133e-06
GAMG:  Solving for p_rgh, Initial residual = 0.211612, Final residual = 0.00193563, No Iterations 21
GAMG:  Solving for p_rgh, Initial residual = 0.101935, Final residual = 0.000883467, No Iterations 6
GAMG:  Solving for p_rgh, Initial residual = 0.00600616, Final residual = 5.97428e-05, No Iterations 16
diagonal:  Solving for rho, Initial residual = 0, Final residual = 0, No Iterations 0
time step continuity errors : sum local = 2.85086e-07, global = 6.20084e-08, cumulative = 1.12333e-06
Sono qui: file .C

Ora sono qui: file .C. Sempre tutto ok!

PIMPLE: iteration 2
DILUPBiCG:  Solving for Ux, Initial residual = 0.575807, Final residual = 6.74872e-10, No Iterations 32
DILUPBiCG:  Solving for Uy, Initial residual = 0.483661, Final residual = 9.24265e-10, No Iterations 31
DILUPBiCG:  Solving for Uz, Initial residual = 0.821023, Final residual = 8.99823e-10, No Iterations 27
*** glibc detected *** buoyantPimpleFoam_Epta: corrupted double-linked list: 0x00000000029df480 ***
======= Backtrace: =========
/lib/libc.so.6(+0x77806)[0x7fe9170b2806]
/lib/libc.so.6(+0x7c5e4)[0x7fe9170b75e4]
/lib/libc.so.6(__libc_malloc+0x6e)[0x7fe9170b77de]
/usr/lib/libstdc++.so.6(_Znwm+0x1d)[0x7fe91792324d]
/usr/lib/libstdc++.so.6(_Znam+0x9)[0x7fe917923369]
buoyantPimpleFoam_Epta(_ZNK4Foam7fvPatch18patchInternalFieldIdEENS_3tmpINS_5FieldIT_EEEERKNS_5UListIS4_EE+0xbc)[0x43536c]
buoyantPimpleFoam_Epta(_ZNK4Foam12fvPatchFieldIdE18patchInternalFieldEv+0x15)[0x435435]
buoyantPimpleFoam_Epta(_ZNK4Foam12fvPatchFieldIdE6snGradEv+0x41)[0x451dc1]
/opt/openfoam210/platforms/linux64GccDPOpt/lib/libfiniteVolume.so(_ZN4Foam2fv9gaussGradIdE25correctBoundaryConditionsERKNS_14GeometricFieldIdNS_12fvPatchFieldENS_7volMeshEEERNS3_INS_6VectorIdEES4_S5_EE+0x237)[0x7fe918c72ba7]
/opt/openfoam210/platforms/linux64GccDPOpt/lib/libfiniteVolume.so(_ZNK4Foam2fv9gaussGradIdE8calcGradERKNS_14GeometricFieldIdNS_12fvPatchFieldENS_7volMeshEEERKNS_4wordE+0x96)[0x7fe918c86346]
buoyantPimpleFoam_Epta(_ZNK4Foam2fv10gradSchemeIdE4gradERKNS_14GeometricFieldIdNS_12fvPatchFieldENS_7volMeshEEERKNS_4wordE+0xfe)[0x45580e]
/opt/openfoam210/platforms/linux64GccDPOpt/lib/libfiniteVolume.so(_ZNK4Foam2fv15correctedSnGradIdE18fullGradCorrectionERKNS_14GeometricFieldIdNS_12fvPatchFieldENS_7volMeshEEE+0x1ba)[0x7fe91905861a]
/opt/openfoam210/platforms/linux64GccDPOpt/lib/libfiniteVolume.so(_ZNK4Foam2fv15correctedSnGradIdE10correctionERKNS_14GeometricFieldIdNS_12fvPatchFieldENS_7volMeshEEE+0x9)[0x7fe9190523c9]
/opt/openfoam210/platforms/linux64GccDPOpt/lib/libfiniteVolume.so(_ZNK4Foam2fv12snGradSchemeIdE6snGradERKNS_14GeometricFieldIdNS_12fvPatchFieldENS_7volMeshEEE+0x104)[0x7fe919053d54]
buoyantPimpleFoam_Epta(_ZN4Foam3fvc6snGradIdEENS_3tmpINS_14GeometricFieldIT_NS_13fvsPatchFieldENS_11surfaceMeshEEEEERKNS3_IS4_NS_12fvPatchFieldENS_7volMeshEEERKNS_4wordE+0x4d)[0x448d4d]
buoyantPimpleFoam_Epta(_ZN4Foam3fvc6snGradIdEENS_3tmpINS_14GeometricFieldIT_NS_13fvsPatchFieldENS_11surfaceMeshEEEEERKNS3_IS4_NS_12fvPatchFieldENS_7volMeshEEE+0x6e)[0x448eae]
buoyantPimpleFoam_Epta[0x4231ce]
/lib/libc.so.6(__libc_start_main+0xfd)[0x7fe917059c4d]
buoyantPimpleFoam_Epta[0x4207e9]
======= Memory map: ========
00400000-004a6000 r-xp 00000000 08:01 2363070                            /home/lab/OpenFOAM/lab-2.1.0/platforms/linux64GccDPOpt/bin/buoyantPimpleFoam_Epta
006a6000-006a8000 r--p 000a6000 08:01 2363070                            /home/lab/OpenFOAM/lab-2.1.0/platforms/linux64GccDPOpt/bin/buoyantPimpleFoam_Epta
006a8000-006a9000 rw-p 000a8000 08:01 2363070                            /home/lab/OpenFOAM/lab-2.1.0/platforms/linux64GccDPOpt/bin/buoyantPimpleFoam_Epta
01c22000-0c25d000 rw-p 00000000 00:00 0                                  [heap]
7fe90c000000-7fe90c021000 rw-p 00000000 00:00 0 
7fe90c021000-7fe910000000 ---p 00000000 00:00 0 
7fe911490000-7fe912c35000 rw-p 00000000 00:00 0 
7fe912e41000-7fe9139fe000 rw-p 00000000 00:00 0 
7fe9139fe000-7fe913a0a000 r-xp 00000000 08:01 1838542                    /lib/libnss_files-2.11.1.so
7fe913a0a000-7fe913c09000 ---p 0000c000 08:01 1838542                    /lib/libnss_files-2.11.1.so
7fe913c09000-7fe913c0a000 r--p 0000b000 08:01 1838542                    /lib/libnss_files-2.11.1.so
7fe913c0a000-7fe913c0b000 rw-p 0000c000 08:01 1838542                    /lib/libnss_files-2.11.1.so
7fe913c0b000-7fe913c15000 r-xp 00000000 08:01 1838528                    /lib/libnss_nis-2.11.1.so
7fe913c15000-7fe913e14000 ---p 0000a000 08:01 1838528                    /lib/libnss_nis-2.11.1.so
7fe913e14000-7fe913e15000 r--p 00009000 08:01 1838528                    /lib/libnss_nis-2.11.1.so
7fe913e15000-7fe913e16000 rw-p 0000a000 08:01 1838528                    /lib/libnss_nis-2.11.1.so
7fe913e16000-7fe913e1e000 r-xp 00000000 08:01 1838527                    /lib/libnss_compat-2.11.1.so
7fe913e1e000-7fe91401d000 ---p 00008000 08:01 1838527                    /lib/libnss_compat-2.11.1.so
7fe91401d000-7fe91401e000 r--p 00007000 08:01 1838527                    /lib/libnss_compat-2.11.1.so
7fe91401e000-7fe91401f000 rw-p 00008000 08:01 1838527                    /lib/libnss_compat-2.11.1.so
7fe91401f000-7fe914042000 r-xp 00000000 08:01 1973877                    /opt/openfoam210/platforms/linux64GccDPOpt/lib/libthermophysicalFunctions.so
7fe914042000-7fe914242000 ---p 00023000 08:01 1973877                    /opt/openfoam210/platforms/linux64GccDPOpt/lib/libthermophysicalFunctions.so
7fe914242000-7fe914243000 r--p 00023000 08:01 1973877                    /opt/openfoam210/platforms/linux64GccDPOpt/lib/libthermophysicalFunctions.so
7fe914243000-7fe914244000 rw-p 00024000 08:01 1973877                    /opt/openfoam210/platforms/linux64GccDPOpt/lib/libthermophysicalFunctions.so
7fe914244000-7fe914334000 r-xp 00000000 08:01 1973780                    /opt/openfoam210/platforms/linux64GccDPOpt/lib/libliquidProperties.so
7fe914334000-7fe914534000 ---p 000f0000 08:01 1973780                    /opt/openfoam210/platforms/linux64GccDPOpt/lib/libliquidProperties.so
7fe914534000-7fe914537000 r--p 000f0000 08:01 1973780                    /opt/openfoam210/platforms/linux64GccDPOpt/lib/libliquidProperties.so
7fe914537000-7fe914538000 rw-p 000f3000 08:01 1973780                    /opt/openfoam210/platforms/linux64GccDPOpt/lib/libliquidProperties.so
7fe914538000-7fe914547000 r-xp 00000000 08:01 1973861                    /opt/openfoam210/platforms/linux64GccDPOpt/lib/libsolidProperties.so
7fe914547000-7fe914747000 ---p 0000f000 08:01 1973861                    /opt/openfoam210/platforms/linux64GccDPOpt/lib/libsolidProperties.so
7fe914747000-7fe914748000 r--p 0000f000 08:01 1973861                    /opt/openfoam210/platforms/linux64GccDPOpt/lib/libsolidProperties.so
7fe914748000-7fe914749000 rw-p 00010000 08:01 1973861                    /opt/openfoam210/platforms/linux64GccDPOpt/lib/libsolidProperties.soAborted
. I think it is linked with memory allocation.

Do you know, by chance, the possible reasons of this message..

Thanks a lot,

Sam
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