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SU2 compilation with MPI option

Dear all,

I downloaded SU2 and managed to compile it in serial mode without problem.
On my system I also have OpenFOAM installed.
When I try to install SU2 with MPI option, I get de following error:

I use the following configuration:
./configure --with-MPI=mpic++ --with-Tecio=/usr/software/tecplot/lib --with-CGNS-lib=/usr/local/lib --with-CGNS-include=/usr/local/include

then running make gives me:

Code:

Making all in trunk/Common/lib

make[1]: entrant dans le répertoire « /home/vincent/SU2v2.0/trunk/Common/lib »

if mpic++ -DPACKAGE_NAME=\"SU\^2\" -DPACKAGE_TARNAME=\"SU\^2\" -DPACKAGE_VERSION=\"2.0\" -DPACKAGE_STRING=\"SU\^2\ 2.0\" -DPACKAGE_BUGREPORT=\"susquared-dev@lists.stanford.edu\" -DPACKAGE=\"SU\^2\" -DVERSION=\"2.0\"  -I. -I.    -I/usr/local/include -DNO_METIS  -g -O2 -MT ../src/libSU2_a-config_structure.o -MD -MP -MF "../src/.deps/libSU2_a-config_structure.Tpo" -c -o ../src/libSU2_a-config_structure.o `test -f '../src/config_structure.cpp' || echo './'`../src/config_structure.cpp; \

    then mv -f "../src/.deps/libSU2_a-config_structure.Tpo" "../src/.deps/libSU2_a-config_structure.Po"; else rm -f "../src/.deps/libSU2_a-config_structure.Tpo"; exit 1; fi

../src/config_structure.cpp: In constructor ‘CConfig::CConfig(char*, short unsigned int, short unsigned int, short unsigned int, short unsigned int)’:

../src/config_structure.cpp:36:9: erreur: ‘MPI’ has not been declared

../src/config_structure.cpp: In member function ‘void CConfig::SetPostprocessing(short unsigned int, short unsigned int)’:

../src/config_structure.cpp:1978:11: erreur: ‘MPI’ has not been declared

../src/config_structure.cpp:1990:11: erreur: ‘MPI’ has not been declared

../src/config_structure.cpp: In member function ‘void CConfig::SetMarkers(short unsigned int, short unsigned int)’:

../src/config_structure.cpp:2054:13: erreur: ‘MPI’ has not been declared

../src/config_structure.cpp: In member function ‘void CConfig::SetFileNameDomain(short unsigned int)’:

../src/config_structure.cpp:3871:6: erreur: ‘MPI’ has not been declared

../src/config_structure.cpp:3877:6: erreur: ‘MPI’ has not been declared

../src/config_structure.cpp:3882:6: erreur: ‘MPI’ has not been declared

../src/config_structure.cpp: In member function ‘void CConfig::UpdateCFL(long unsigned int)’:

../src/config_structure.cpp:3965:12: erreur: ‘MPI’ has not been declared

../src/config_structure.cpp: In member function ‘void CConfig::SetNondimensionalization(short unsigned int, short unsigned int)’:

../src/config_structure.cpp:4500:9: erreur: ‘MPI’ has not been declared

make[1]: *** [../src/libSU2_a-config_structure.o] Erreur 1

make[1]: quittant le répertoire « /home/vincent/SU2v2.0/trunk/Common/lib »

make: *** [all-recursive] Erreur 1

The mpi installed is the one comming with the last version of openfoam:

Code:

 ~/SU2v2.0 > mpic++ -v

Utilisation des specs internes.

COLLECT_GCC=/usr/bin/g++

COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper

Target: x86_64-linux-gnu

Configuré avec: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.6.3-1ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.6 --enable-shared --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --enable-objc-gc --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu

Modèle de thread: posix

gcc version 4.6.3 (Ubuntu/Linaro 4.6.3-1ubuntu5)

What is going wrong?

Hi Vincent,

Do you also have Metis version 4.0.3 on your machine? If not, could you please install this version and add it to your configure options above (i.e. --with-Metis-lib & --with-Metis-include options)? Metis 4.0.3 can be found here: http://glaros.dtc.umn.edu/gkhome/fsroot/sw/metis/OLD.

Metis will need to be linked in at compile time and SU2_DDC will need to be used to partition the mesh before SU2_CFD is called. This process is all automated by using the parallel_computation.py script.

Hope this helps!
Tom

Hi Tom,
Thanks for your reply.
However, it still does not work.

Here is my configure command:

Code:

./configure --with-MPI=mpic++ --with-Tecio=/usr/software/tecplot/lib --with-Metis-lib=/home/vincent/SU2v2.0/trunk/metis-4.0.3 --with-Metis-include=/home/vincent/SU2v2.0/trunk/metis-4.0.3/Lib

the configuration is ok:

Code:

Build Configuration Summary:



          Source code location:     /home/vincent/SU2v2.0

          Install location:     /usr/local

          Version:                  2.0

          Compiler:                 mpic++

          Preprocessor flags:       

          Compiler flags:           -g -O2

          Linker flags:             

          CGNS support:             no

    MPI support:             yes

    Metis support:        yes



    Build SU2_CFD:         yes

    Build SU2_DDC:         yes

    Build SU2_GPC:         yes

    Build SU2_MAC:         yes

    Build SU2_MDC:         yes

    Build SU2_PBC:         yes

    Build SU2_SMC:         yes

but then the compilation still crashes:

Code:

Making all in trunk/Common/lib

make[1]: entrant dans le répertoire « /home/vincent/SU2v2.0/trunk/Common/lib »

if mpic++ -DPACKAGE_NAME=\"SU\^2\" -DPACKAGE_TARNAME=\"SU\^2\" -DPACKAGE_VERSION=\"2.0\" -DPACKAGE_STRING=\"SU\^2\ 2.0\" -DPACKAGE_BUGREPORT=\"susquared-dev@lists.stanford.edu\" -DPACKAGE=\"SU\^2\" -DVERSION=\"2.0\"  -I. -I.    -DNO_CGNS -I/home/vincent/SU2v2.0/trunk/metis-4.0.3/Lib   -g -O2 -MT ../src/libSU2_a-config_structure.o -MD -MP -MF "../src/.deps/libSU2_a-config_structure.Tpo" -c -o ../src/libSU2_a-config_structure.o `test -f '../src/config_structure.cpp' || echo './'`../src/config_structure.cpp; \

    then mv -f "../src/.deps/libSU2_a-config_structure.Tpo" "../src/.deps/libSU2_a-config_structure.Po"; else rm -f "../src/.deps/libSU2_a-config_structure.Tpo"; exit 1; fi

../src/config_structure.cpp: In constructor ‘CConfig::CConfig(char*, short unsigned int, short unsigned int, short unsigned int, short unsigned int)’:

../src/config_structure.cpp:36:9: erreur: ‘MPI’ has not been declared

../src/config_structure.cpp: In member function ‘void CConfig::SetPostprocessing(short unsigned int, short unsigned int)’:

../src/config_structure.cpp:1978:11: erreur: ‘MPI’ has not been declared

../src/config_structure.cpp:1990:11: erreur: ‘MPI’ has not been declared

../src/config_structure.cpp: In member function ‘void CConfig::SetMarkers(short unsigned int, short unsigned int)’:

../src/config_structure.cpp:2054:13: erreur: ‘MPI’ has not been declared

../src/config_structure.cpp: In member function ‘void CConfig::SetFileNameDomain(short unsigned int)’:

../src/config_structure.cpp:3871:6: erreur: ‘MPI’ has not been declared

../src/config_structure.cpp:3877:6: erreur: ‘MPI’ has not been declared

../src/config_structure.cpp:3882:6: erreur: ‘MPI’ has not been declared

../src/config_structure.cpp: In member function ‘void CConfig::UpdateCFL(long unsigned int)’:

../src/config_structure.cpp:3965:12: erreur: ‘MPI’ has not been declared

../src/config_structure.cpp: In member function ‘void CConfig::SetNondimensionalization(short unsigned int, short unsigned int)’:

../src/config_structure.cpp:4500:9: erreur: ‘MPI’ has not been declared

make[1]: *** [../src/libSU2_a-config_structure.o] Erreur 1

make[1]: quittant le répertoire « /home/vincent/SU2v2.0/trunk/Common/lib »

make: *** [all-recursive] Erreur 1

You may want to get a fresh copy of MPI and configure/build it yourself (I am not sure how your mpic++ is configured). For instance, I have had success compiling for parallel runs on my laptop using Open MPI with the GNU compilers. You can find Open MPI here: http://www.open-mpi.org. Let me know if this works...

Hi Vincent,

did you finally get SU2 to compile?

I'm experiencing the same problem as you did and I'm not able to make it work.

Regards,

Ricardo.

Unfortunately no, I did not have much time to work on this and since I managed to compile the code on our cluster, it was fine for me.