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Old   March 27, 2014, 23:54
Default Compile SU2 with mpiicpc
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zhen yi
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Hello sir,

When I compile SU2 with inteMPI ---- mpiicpc, there are some bugs occurred as follow:

1 Making all in Common/lib
2 make[1]: Entering directory `/parastor/users/isc01/zy/temp/SU2-master-back/Common/lib'
3 mpiicpc -DPACKAGE_NAME=\"SU\^2\" -DPACKAGE_TARNAME=\"SU\^2\" -DPACKAGE_VERSION=\"3.0.0\ \"eagle\"\" -DPACKAGE_STRING=\"SU\^2\ 3.0.0\ \"eagle\"\ " -DPACKAGE_BUGREPORT=\"susquared-dev@lists.stanford.edu\" -DPACKAGE_URL=\"http://su2.stanford.edu\" -DPACKAGE=\"SU\^2\" -DVERSION=\"3.0.0\ \"e agle\"\" -I. -O3 -I/parastor/users/isc01/zy/cgns/include -I/parastor/users/isc01/zy/metis/include -DMETIS_5 -I/parastor/users/isc01/zy/tecio/ tecsrc/ -DNO_MUTATIONPP -O3 -MT ../src/libSU2_a-config_structure.o -MD -MP -MF ../src/.deps/libSU2_a-config_structure.Tpo -c -o ../src/libSU2_ a-config_structure.o `test -f '../src/config_structure.cpp' || echo './'`../src/config_structure.cpp
4 mv -f ../src/.deps/libSU2_a-config_structure.Tpo ../src/.deps/libSU2_a-config_structure.Po
5 mpiicpc -DPACKAGE_NAME=\"SU\^2\" -DPACKAGE_TARNAME=\"SU\^2\" -DPACKAGE_VERSION=\"3.0.0\ \"eagle\"\" -DPACKAGE_STRING=\"SU\^2\ 3.0.0\ \"eagle\"\ " -DPACKAGE_BUGREPORT=\"susquared-dev@lists.stanford.edu\" -DPACKAGE_URL=\"http://su2.stanford.edu\" -DPACKAGE=\"SU\^2\" -DVERSION=\"3.0.0\ \"e agle\"\" -I. -O3 -I/parastor/users/isc01/zy/cgns/include -I/parastor/users/isc01/zy/metis/include -DMETIS_5 -I/parastor/users/isc01/zy/tecio/ tecsrc/ -DNO_MUTATIONPP -O3 -MT ../src/libSU2_a-dual_grid_structure.o -MD -MP -MF ../src/.deps/libSU2_a-dual_grid_structure.Tpo -c -o ../src/l ibSU2_a-dual_grid_structure.o `test -f '../src/dual_grid_structure.cpp' || echo './'`../src/dual_grid_structure.cpp
6 /public/soft/intel/impi/3.2.2.006/include64/mpicxx.h(45): catastrophic error: #error directive: "SEEK_SET is #defined but must not be for the C ++ binding of MPI. Include mpi.h before stdio.h"
7 #error "SEEK_SET is #defined but must not be for the C++ binding of MPI. Include mpi.h before stdio.h"
8 ^
9
10 compilation aborted for ../src/dual_grid_structure.cpp (code 4)
11 make[1]: *** [../src/libSU2_a-dual_grid_structure.o] Error 4
12 make[1]: Leaving directory `/parastor/users/isc01/zy/temp/SU2-master-back/Common/lib'
13 make: *** [all-recursive] Error 1

May somebody please help me to solve this problem?

By the way, I used to try the way as follow:

Add
#undef SEEK_SET
#undef SEEK_END
#undef SEEK_CUR
before mpi.h is included

only "config_structure.hpp", "geometry_structure.hpp" and "solver_structure.hpp" need be modified

But it doesn't work. The SU2 parallel_computation got the error way.

Thank you.
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Old   April 13, 2014, 15:28
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Carlos Alexandre Tomigawa Aguni
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Hello codezy.

Are you still stuck with this error?
I noticed that you've searched this ERROR in installation with INTEL compiler

I didn't modify any file. Using that flag worked fine for me though.
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Old   April 16, 2014, 04:30
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zhen yi
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Quote:
Originally Posted by CrashLaker View Post
Hello codezy.

Are you still stuck with this error?
I noticed that you've searched this ERROR in installation with INTEL compiler

I didn't modify any file. Using that flag worked fine for me though.

Hello sir,

Could you tell me how you can worked fine with mpiicpc?
Are you using SU2 3.0.0? Or may be your version of mpiicpc is......

Thank you
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Old   April 16, 2014, 10:20
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Carlos Alexandre Tomigawa Aguni
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Quote:
Originally Posted by codezy View Post
Hello sir,

Could you tell me how you can worked fine with mpiicpc?
Are you using SU2 3.0.0? Or may be your version of mpiicpc is......

Thank you
Hello codezy.

I don't know all the in depth details since it's been a while.
But I'm using SU2 3.0 along with Intel MPI 4.1.3.048.

wish you lucky!

Edit1:
Another thing. You don't need to modify any file.
Just try adding -DMPICH_IGNORE_CXX_SEEK flag.
Note that this flag is different from this one (ERROR in installation with INTEL compiler)
where I saw here (https://software.intel.com/en-us/art...driver-mpiicpc).

Don't use this flag "-DMPICH_SKIP_MPICXX"!
Just this one : -DMPICH_IGNORE_CXX_SEEK

Best regards.
Crash.
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