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How to find indexes of the species in species transport model

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Old   June 13, 2018, 07:00
Default How to find indexes of the species in species transport model
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Hi all,

I am using a species transport model for my simulation, but there are 3 species predefined in ansys, which cannot be removed (it is showing the error the species are used in one or more equation, but I have not modelled them in any of the equations), and I am using a UDF to define the diffusivities of each species, but I am using only 6 species, and the fluent is adding 3 more by itslef which cannot be removed. On running the calculation it shows the error,

Invalid mass diffusivities(zero mass diffusivities).

so I am assuming that these zero diffusivities are of those species which could not be defined in UDF, as we need indexes of the species to define diffusivities, can anyone please explain how to find the indexes of the same.

Thank you
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Old   June 13, 2018, 11:34
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Hi Nishant,

I do not think you should tolerate 3 unwanted species in your model, so the initial focus has to be on reaching a setup without them. (This is not a UDF question, but never mind.)

I do admit that there are times when the easiest way to change a species list (even to reorder the list) is to start a new session, read in a mesh file, and set up the whole thing again from scratch. This is particularly true if you have reactions etc -- you cannot remove a species if it is involved in a reaction. (And if you try to put in any other species temporarily, Fluent may complain about the elements not balancing. And if you try to invent a temporary species with the same formula, it complains that you can't duplicate formulas. This bureaucracy continues until you give up and start from scratch. Horrifying but true.) So "start again" is going to be my fallback advice.

Once you have carefully removed the unwanted species from every possible setting (including diffusivity), what stops you from deleting them? What error message do you get when you try?

Good luck!
Ed
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Old   June 13, 2018, 12:18
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Thanks, Obscureed for your reply, but I have already tried that many times, I even started from scratch but that is also of no use. As I mentioned earlier also, I do not have modeled those species in any of the reaction, but the fluent has and I don't even know in which reactions. So, I think for the time being it's better to find the indexes of those species and make their diffusivities close to zero.

Also, I want to ask, is it possible to compile the UDF without using Microsoft Visual Studio? as the thesis I am referring to has mentioned to use it.

Thank you
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Old   June 14, 2018, 04:20
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Hi Nishant,

OK, can you describe when and how it goes wrong when you start from scratch? The steps as I recall are as follows (in order):
-- Start with a mesh file.
-- Add energy and a turbulence model.
-- Go to Species Transport and activate that (but not any other aspects like Multicomponent diffusion, not yet). This will use the standard template with h2o, o2, n2 species.
-- Go to Materials and create the species you actually want (as Fluids).
-- In Materials, edit the Mixture: Mixture Species...Names. Add the species that you want to the mixture -- get the order right, because it is difficult to change later. Remove the default species.
-- You can now delete the default species (once they are no longer involved in the mixture). You can delete Air as well.
-- Now you can start adding diffusion and so on.

Does that sequence fail? Do h2o etc return? If so, you have a bug. Upgrade to the latest Fluent and try again, then report it (and please tell us how it goes).

Good luck!
Ed
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Old   June 14, 2018, 04:42
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On the question about Visual Studio as a compiler for Fluent on Windows: one important point is that there are legitimate, free versions of Visual Studio that work. I've had good experience with Microsoft Visual Studio Express 2012 in the past -- and "good experience" included no need to change any environment variables, and no need to change how Fluent is launched. A more recent post Compile Fluent UDF with Windows 10 suggests that the Community 2017 version works, but needs some changes to environment variables. (This does not count as a good experience in my book, but it is a pain that you have to endure infrequently.)



There are some useful posts on compiling UDFs -- for example: links to instructions Visual Studio 2017 for udf use - which modules do I need?; troubleshooting errors How to solve UDF compilation problems in Fluent.; the basic steps of compile/load/hook The UDF library you are trying to load (libudf) is not compiled for 3D on the current.
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Old   June 15, 2018, 02:43
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Hi obscureed

-- At first, I am not using a turbulence model
--secondly when I am adding new materials in the species transport model (in Ansys fluent 16.0), there were three previously added materials o2, n2, and H2o, which could not be removed....but now I am working on 14.5, and no such problem I am facing, but still I want to know the indexes as it will help me understand whether the indexes I have given in my code are the same as those of the indexes that fluent gave to the species.

Also, earlier I was working in a lab that does not have Microsoft visual studio installed on its pc, but now I got one which has.

also thanks for the link you have provided for the errors in compiling a UDF, I am facing an error "'nmake' is not recognized as an internal or external command, operable program or batch file" and I got to know why is that so, but as it is mentioned there also, I could not find it now how to resolve it.

Thank you
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Old   June 15, 2018, 03:27
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Hi Nishant,

I regard changing from Fluent 16.0 to Fluent 14.5 as a backward move. You never did say what prevented you from removing the species, but never mind.

For looking at species by index in UDF, try the following:
Code:
#include "udf.h"
DEFINE_ON_DEMAND(list_species)
{
  Domain *d;
  Material *m, *sp;
  int i;
  d = Get_Domain(1);
  m = mixture_material(d);
  mixture_species_loop(m,sp,i) {
    Message0("species[%3d]: name = %s, formula = %s\n",
        i,MATERIAL_NAME(sp),MATERIAL_FORMULA(sp));
  }
}
I don't think it should give you any surprises: the order of species is the same as the order in the mixture definition, indexed from 0 upwards.

For the nmake error, try following the instructions in the links that I sent, and/or search for other instructions.

Good luck!
Ed
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Old   June 26, 2018, 06:22
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Quote:
Originally Posted by obscureed View Post
Hi Nishant,

I regard changing from Fluent 16.0 to Fluent 14.5 as a backward move. You never did say what prevented you from removing the species, but never mind.

For looking at species by index in UDF, try the following:
Code:
#include "udf.h"
DEFINE_ON_DEMAND(list_species)
{
  Domain *d;
  Material *m, *sp;
  int i;
  d = Get_Domain(1);
  m = mixture_material(d);
  mixture_species_loop(m,sp,i) {
    Message0("species[%3d]: name = %s, formula = %s\n",
        i,MATERIAL_NAME(sp),MATERIAL_FORMULA(sp));
  }
}
I don't think it should give you any surprises: the order of species is the same as the order in the mixture definition, indexed from 0 upwards.

For the nmake error, try following the instructions in the links that I sent, and/or search for other instructions.

Good luck!
Ed

Thanks, that helped
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Old   June 27, 2018, 09:12
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Quote:
Originally Posted by obscureed View Post
Hi Nishant,

I regard changing from Fluent 16.0 to Fluent 14.5 as a backward move. You never did say what prevented you from removing the species, but never mind.

For looking at species by index in UDF, try the following:
Code:
#include "udf.h"
DEFINE_ON_DEMAND(list_species)
{
  Domain *d;
  Material *m, *sp;
  int i;
  d = Get_Domain(1);
  m = mixture_material(d);
  mixture_species_loop(m,sp,i) {
    Message0("species[%3d]: name = %s, formula = %s\n",
        i,MATERIAL_NAME(sp),MATERIAL_FORMULA(sp));
  }
}
I don't think it should give you any surprises: the order of species is the same as the order in the mixture definition, indexed from 0 upwards.

For the nmake error, try following the instructions in the links that I sent, and/or search for other instructions.

Good luck!
Ed
Hi obscureed,

I figured out how to remove nmake error, we have to start the fluent using mv sdk command prompt

thanks
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Old   June 27, 2018, 09:17
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Quote:
Originally Posted by obscureed View Post
Hi Nishant,

I regard changing from Fluent 16.0 to Fluent 14.5 as a backward move. You never did say what prevented you from removing the species, but never mind.

For looking at species by index in UDF, try the following:
Code:
#include "udf.h"
DEFINE_ON_DEMAND(list_species)
{
  Domain *d;
  Material *m, *sp;
  int i;
  d = Get_Domain(1);
  m = mixture_material(d);
  mixture_species_loop(m,sp,i) {
    Message0("species[%3d]: name = %s, formula = %s\n",
        i,MATERIAL_NAME(sp),MATERIAL_FORMULA(sp));
  }
}
I don't think it should give you any surprises: the order of species is the same as the order in the mixture definition, indexed from 0 upwards.

For the nmake error, try following the instructions in the links that I sent, and/or search for other instructions.

Good luck!
Ed
Hi obscureed,

I want to ask whether it is the index of the data structure of the species and can we call the species using these indexes to define the mass fraction/mole-fraction values and/or the reaction rates of the reaction.

Thank you
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Old   June 27, 2018, 09:58
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Hi Nishant,

OK, well it's good that you have the compiler working. In my opinion, the requirement to start Fluent from a particular command prompt is inconvenient (and unnecessary, if you use a good version such as Visual Studio Express 2012), but maybe it's acceptable.

Yes, the index i can be used for things like mass fraction C_YI(c,tc,i).

Mole fractions are not stored, typically -- if you need them, you have to work them out for yourself using molecular masses, which you can get from "MATERIAL_PROP(sp,PROP_mwi)" (where sp is the species pointer returned by the loop, as before).

You can see examples of all these features in the ANSYS help files.

One place where the species index is not necessarily the correct index is when DPM sources include species. Because only one or two species are typically involved (for example, O2 and CO/CO2 for Combusting particles, or the vapour species for Evaporating particles), the DPM species sources do not run through the full array of species. There is some kind of look-up index there -- I forget the details, and the details may be version-dependent. Anyway, everywhere else that I can think of, the index does what you expect.

Good luck,
Ed
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Old   June 27, 2018, 14:22
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Quote:
Originally Posted by obscureed View Post
Hi Nishant,

OK, well it's good that you have the compiler working. In my opinion, the requirement to start Fluent from a particular command prompt is inconvenient (and unnecessary, if you use a good version such as Visual Studio Express 2012), but maybe it's acceptable.

Yes, the index i can be used for things like mass fraction C_YI(c,tc,i).

Mole fractions are not stored, typically -- if you need them, you have to work them out for yourself using molecular masses, which you can get from "MATERIAL_PROP(sp,PROP_mwi)" (where sp is the species pointer returned by the loop, as before).

You can see examples of all these features in the ANSYS help files.

One place where the species index is not necessarily the correct index is when DPM sources include species. Because only one or two species are typically involved (for example, O2 and CO/CO2 for Combusting particles, or the vapour species for Evaporating particles), the DPM species sources do not run through the full array of species. There is some kind of look-up index there -- I forget the details, and the details may be version-dependent. Anyway, everywhere else that I can think of, the index does what you expect.

Good luck,
Ed
Hi obscureed,

Yes, it is not always necessary to load fluent with ms sdk command prompt, but in some cases when there is the problem with versions, and the nmake error occurs, and it is safe to load fluent with it. And thanks for the index thing, that helped a lot.
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Old   September 26, 2023, 11:05
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Quote:
Originally Posted by obscureed View Post
Hi Nishant,

I regard changing from Fluent 16.0 to Fluent 14.5 as a backward move. You never did say what prevented you from removing the species, but never mind.

For looking at species by index in UDF, try the following:
Code:
#include "udf.h"
DEFINE_ON_DEMAND(list_species)
{
  Domain *d;
  Material *m, *sp;
  int i;
  d = Get_Domain(1);
  m = mixture_material(d);
  mixture_species_loop(m,sp,i) {
    Message0("species[%3d]: name = %s, formula = %s\n",
        i,MATERIAL_NAME(sp),MATERIAL_FORMULA(sp));
  }
}
I don't think it should give you any surprises: the order of species is the same as the order in the mixture definition, indexed from 0 upwards.

For the nmake error, try following the instructions in the links that I sent, and/or search for other instructions.

Good luck!
Ed
Could you please write a similar UDF to list site species? I need to know their indexes for making surface reaction UDF, but I need help finding them, and your code returns only fluid species without site species.
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Old   September 27, 2023, 09:53
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Ok I found it. I will pase the modified code here to list both fluid phase species and site species. Someone may find it helpful.

#include "udf.h"
DEFINE_ON_DEMAND(list_species)
{
Domain *d;
Material *m, *sp;
int i;
d = Get_Domain(1);
m = mixture_material(d);
mixture_species_loop(m,sp,i) {
Message0("species[%3d]: name = %s, formula = %s\n",
i,MATERIAL_NAME(sp),MATERIAL_FORMULA(sp));
}
mixture_site_species_loop(m, sp, i) {
Message0("site species[%3d]: name = %s\n", i, MATERIAL_NAME(sp));
}
}
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