francesco |
April 30, 2009 03:19 |
Segmentation fault when running dieselFoam or dieselEngineFoam in parallel
Hi everyone,
It seems that there is some kind of a bug when running dieselEngineFoam in parallel. I've just tested it with the 1.5-dev version and it appears that this application gives a segmentation fault as follows:
Code:
[node023:13101] *** Process received signal ***
[node023:13101] Signal: Segmentation fault (11)
[node023:13101] Signal code: (-6)
[node023:13101] Failing at address: 0x7440000332d
[node023:13101] [ 0] /lib64/libc.so.6 [0x3916e30280]
[node023:13101] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x3916e30215]
[node023:13101] [ 2] /lib64/libc.so.6 [0x3916e30280]
[node023:13101] [ 3] /lib64/libc.so.6 [0x3916e71f65]
[node023:13101] [ 4] /lib64/libc.so.6(__libc_malloc+0x7a) [0x3916e7402a]
[node023:13101] [ 5] /home/term/bberger/OpenFOAM/ThirdParty/gcc-4.3.1/platforms/linux64/lib64/libstdc++.so.6(_Znwm+0x1d) [0x2b0dc7aa5a7d]
[node023:13101] [ 6] /home/term/bberger/OpenFOAM/ThirdParty/gcc-4.3.1/platforms/linux64/lib64/libstdc++.so.6(_ZNSs4_Rep9_S_createEmmRKSaIcE+0x21) [0x2b0dc7a83341]
[node023:13101] [ 7] /home/term/bberger/OpenFOAM/ThirdParty/gcc-4.3.1/platforms/linux64/lib64/libstdc++.so.6(_ZNSs4_Rep8_M_cloneERKSaIcEm+0x2b) [0x2b0dc7a83beb]
[node023:13101] [ 8] /home/term/bberger/OpenFOAM/ThirdParty/gcc-4.3.1/platforms/linux64/lib64/libstdc++.so.6(_ZNSs7reserveEm+0x41) [0x2b0dc7a84871]
[node023:13101] [ 9] /home/term/bberger/OpenFOAM/ThirdParty/gcc-4.3.1/platforms/linux64/lib64/libstdc++.so.6(_ZNSs6appendEPKcm+0x93) [0x2b0dc7a84ad3]
[node023:13101] [10] /home/term/bberger/OpenFOAM/OpenFOAM-1.5-dev/lib/linux64GccDPOpt/libdieselSpray.so(_ZNK4Foam16DimensionedFieldIdNS_7volMeshEE7averageEv+0x52) [0x2b0dc5ca72b2]
[node023:13101] [11] /home/term/bberger/OpenFOAM/OpenFOAM-1.5-dev/lib/linux64GccDPOpt/libdieselSpray.so(_ZN4Foam5spray24calculateAmbientPressureEv+0x17) [0x2b0dc5cb1ce7]
[node023:13101] [12] /home/term/bberger/OpenFOAM/OpenFOAM-1.5-dev/lib/linux64GccDPOpt/libdieselSpray.so(_ZN4Foam5spray6evolveEv+0x2e2) [0x2b0dc5ca9342]
[node023:13101] [13] dieselEngineFoam [0x419fea]
[node023:13101] [14] /lib64/libc.so.6(__libc_start_main+0xf4) [0x3916e1d974]
[node023:13101] [15] dieselEngineFoam(_ZNK4Foam11regIOobject11writeObjectENS_8IOstream12streamFormatENS1_13versionNumberENS1_15compressionTypeE+0xf1) [0x417869]
[node023:13101] *** End of error message ***
mpirun noticed that job rank 0 with PID 13101 on node node023 exited on signal 11 (Segmentation fault).
[node023:13237] *** Process received signal ***
[node023:13237] Signal: Segmentation fault (11)
[node023:13237] Signal code: (-6)
[node023:13237] Failing at address: 0x744000033b5
[node023:13237] [ 0] /lib64/libc.so.6 [0x3916e30280]
[node023:13237] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x3916e30215]
[node023:13237] [ 2] /lib64/libc.so.6 [0x3916e30280]
[node023:13237] [ 3] /lib64/libc.so.6 [0x3916e71f65]
[node023:13237] [ 4] /lib64/libc.so.6(__libc_malloc+0x7a) [0x3916e7402a]
[node023:13237] [ 5] /home/term/bberger/OpenFOAM/ThirdParty/gcc-4.3.1/platforms/linux64/lib64/libstdc++.so.6(_Znwm+0x1d) [0x2b11c8e1da7d]
[node023:13237] [ 6] /home/term/bberger/OpenFOAM/ThirdParty/gcc-4.3.1/platforms/linux64/lib64/libstdc++.so.6(_ZNSs4_Rep9_S_createEmmRKSaIcE+0x21) [0x2b11c8dfb341]
[node023:13237] [ 7] /home/term/bberger/OpenFOAM/ThirdParty/gcc-4.3.1/platforms/linux64/lib64/libstdc++.so.6(_ZNSs4_Rep8_M_cloneERKSaIcEm+0x2b) [0x2b11c8dfbbeb]
[node023:13237] [ 8] /home/term/bberger/OpenFOAM/ThirdParty/gcc-4.3.1/platforms/linux64/lib64/libstdc++.so.6(_ZNSs7reserveEm+0x41) [0x2b11c8dfc871]
[node023:13237] [ 9] /home/term/bberger/OpenFOAM/ThirdParty/gcc-4.3.1/platforms/linux64/lib64/libstdc++.so.6(_ZNSs6appendEPKcm+0x93) [0x2b11c8dfcad3]
[node023:13237] [10] /home/term/bberger/OpenFOAM/OpenFOAM-1.5-dev/lib/linux64GccDPOpt/libdieselSpray.so(_ZNK4Foam16DimensionedFieldIdNS_7volMeshEE7averageEv+0x52) [0x2b11c701f2b2]
[node023:13237] [11] /home/term/bberger/OpenFOAM/OpenFOAM-1.5-dev/lib/linux64GccDPOpt/libdieselSpray.so(_ZN4Foam5spray24calculateAmbientPressureEv+0x17) [0x2b11c7029ce7]
[node023:13237] [12] /home/term/bberger/OpenFOAM/OpenFOAM-1.5-dev/lib/linux64GccDPOpt/libdieselSpray.so(_ZN4Foam5spray6evolveEv+0x2e2) [0x2b11c7021342]
[node023:13237] [13] dieselEngineFoam [0x419fea]
[node023:13237] [14] /lib64/libc.so.6(__libc_start_main+0xf4) [0x3916e1d974]
[node023:13237] [15] dieselEngineFoam(_ZNK4Foam11regIOobject11writeObjectENS_8IOstream12streamFormatENS1_13versionNumberENS1_15compressionTypeE+0xf1) [0x417869]
[node023:13237] *** End of error message ***
I've observed the same problem with dieselFoam on the aachenBomb tutorial case.
These two applications work on serial. Other applications (icoFoam and engineFoam) work fine on the same cluster.
If someone can help me, it would be great.
Francesco.
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