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-   -   [waves2Foam] Error in compiling waves2foam on Openfoam_v1812 (https://www.cfd-online.com/Forums/openfoam-community-contributions/228864-error-compiling-waves2foam-openfoam_v1812.html)

majid_m87 July 17, 2020 09:25
Error in compiling waves2foam on Openfoam_v1812
 
Hi
I am trying to compile Waves2Foam on OpenFoam_v1812, but I got the following error. I will appreciate that if you can help me with that.

COMPILE SOLVERS
=====================================
Making dependency list for source file waveFoam.C
g++ -std=c++11 -m64 -DOPENFOAM=1812 -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wold-style-cast -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -Wno-attributes -Wno-unknown-pragmas -O3 -DNoRepository -ftemplate-depth-100 -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/../applications/solvers/multiphase/VoF -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/transportModels/twoPhaseMixture/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/transportModels -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/transportModels/incompressible/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/transportModels/interfaceProperties/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/TurbulenceModels/turbulenceModels/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/TurbulenceModels/incompressible/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/transportModels/immiscibleIncompressibleTwoPhaseMixture/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/finiteVolume/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/dynamicFvMesh/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/meshTools/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/sampling/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/40218666-v1812/applications/utilities/waves2Foam/src/waves2Foam/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/40218666-v1812/applications/utilities/waves2Foam/src/waves2FoamSamplingNew/lnInclude -I/opt/gridware/local/el7/pkg/libs/gsl/2.4/gcc-4.8.5/include/gsl -DOFVERSION=1812 -DEXTBRANCH=0 -DOFPLUSBRANCH=1 -DXVERSION=0 -IlnInclude -I. -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/OpenFOAM/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/OSspecific/POSIX/lnInclude -fPIC -c waveFoam.C -o Make/linux64GccDPInt32Opt/waveFoam.o
g++ -std=c++11 -m64 -DOPENFOAM=1812 -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wold-style-cast -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -Wno-attributes -Wno-unknown-pragmas -O3 -DNoRepository -ftemplate-depth-100 -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/../applications/solvers/multiphase/VoF -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/transportModels/twoPhaseMixture/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/transportModels -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/transportModels/incompressible/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/transportModels/interfaceProperties/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/TurbulenceModels/turbulenceModels/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/TurbulenceModels/incompressible/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/transportModels/immiscibleIncompressibleTwoPhaseMixture/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/finiteVolume/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/dynamicFvMesh/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/meshTools/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/sampling/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/40218666-v1812/applications/utilities/waves2Foam/src/waves2Foam/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/40218666-v1812/applications/utilities/waves2Foam/src/waves2FoamSamplingNew/lnInclude -I/opt/gridware/local/el7/pkg/libs/gsl/2.4/gcc-4.8.5/include/gsl -DOFVERSION=1812 -DEXTBRANCH=0 -DOFPLUSBRANCH=1 -DXVERSION=0 -IlnInclude -I. -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/OpenFOAM/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/OSspecific/POSIX/lnInclude -fPIC -Xlinker --add-needed -Xlinker --no-as-needed Make/linux64GccDPInt32Opt/waveFoam.o -L/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/platforms/linux64GccDPInt32Opt/lib \
-limmiscibleIncompressibleTwoPhaseMixture -lturbulenceModels -lincompressibleTurbulenceModels -lfiniteVolume -ldynamicFvMesh -lfvOptions -lmeshTools -lsampling -L/mnt/scratch/users/40218666/OpenFOAM/40218666-v1812/platforms/linux64GccDPInt32Opt/lib -lwaves2Foam -lwaves2FoamSampling -L/opt/gridware/local/el7/pkg/libs/gsl/2.4/gcc-4.8.5/lib -lgsl -lgslcblas -lOpenFOAM -ldl \
-lm -o /mnt/scratch/users/40218666/OpenFOAM/40218666-v1812/platforms/linux64GccDPInt32Opt/bin/waveFoam
Make/linux64GccDPInt32Opt/waveFoam.o: In function `Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh>::storeOldTimes() const':
waveFoam.C:(.text._ZNK4Foam14GeometricFieldIdNS_12 fvPatchFieldENS_7volMeshEE13storeOldTimesEv[_ZNK4Foam14GeometricFieldIdNS_12fvPatchFieldENS_7v olMeshEE13storeOldTimesEv]+0x56): undefined reference to `Foam::string::endsWith(std::__cxx11::basic_string <char, std::char_traits<char>, std::allocator<char> > const&) const'
Make/linux64GccDPInt32Opt/waveFoam.o: In function `Foam::GeometricField<double, Foam::fvsPatchField, Foam::surfaceMesh>::storeOldTimes() const':
waveFoam.C:(.text._ZNK4Foam14GeometricFieldIdNS_13 fvsPatchFieldENS_11surfaceMeshEE13storeOldTimesEv[_ZNK4Foam14GeometricFieldIdNS_13fvsPatchFieldENS_1 1surfaceMeshEE13storeOldTimesEv]+0x56): undefined reference to `Foam::string::endsWith(std::__cxx11::basic_string <char, std::char_traits<char>, std::allocator<char> > const&) const'
Make/linux64GccDPInt32Opt/waveFoam.o: In function `Foam::GeometricField<Foam::Vector<double>, Foam::fvPatchField, Foam::volMesh>::storeOldTimes() const':
waveFoam.C:(.text._ZNK4Foam14GeometricFieldINS_6Ve ctorIdEENS_12fvPatchFieldENS_7volMeshEE13storeOldT imesEv[_ZNK4Foam14GeometricFieldINS_6VectorIdEENS_12fvPat chFieldENS_7volMeshEE13storeOldTimesEv]+0x56): undefined reference to `Foam::string::endsWith(std::__cxx11::basic_string <char, std::char_traits<char>, std::allocator<char> > const&) const'
Make/linux64GccDPInt32Opt/waveFoam.o: In function `Foam::GeometricField<Foam::Vector<double>, Foam::fvsPatchField, Foam::surfaceMesh>::storeOldTimes() const':
waveFoam.C:(.text._ZNK4Foam14GeometricFieldINS_6Ve ctorIdEENS_13fvsPatchFieldENS_11surfaceMeshEE13sto reOldTimesEv[_ZNK4Foam14GeometricFieldINS_6VectorIdEENS_13fvsPa tchFieldENS_11surfaceMeshEE13storeOldTimesEv]+0x56): undefined reference to `Foam::string::endsWith(std::__cxx11::basic_string <char, std::char_traits<char>, std::allocator<char> > const&) const'
Make/linux64GccDPInt32Opt/waveFoam.o: In function `Foam::GeometricField<Foam::SymmTensor<double>, Foam::fvPatchField, Foam::volMesh>::storeOldTimes() const':
waveFoam.C:(.text._ZNK4Foam14GeometricFieldINS_10S ymmTensorIdEENS_12fvPatchFieldENS_7volMeshEE13stor eOldTimesEv[_ZNK4Foam14GeometricFieldINS_10SymmTensorIdEENS_12 fvPatchFieldENS_7volMeshEE13storeOldTimesEv]+0x56): undefined reference to `Foam::string::endsWith(std::__cxx11::basic_string <char, std::char_traits<char>, std::allocator<char> > const&) const'
Make/linux64GccDPInt32Opt/waveFoam.o:waveFoam.C:(.text._ZNK4Foam14GeometricF ieldINS_6TensorIdEENS_12fvPatchFieldENS_7volMeshEE 13storeOldTimesEv[_ZNK4Foam14GeometricFieldINS_6TensorIdEENS_12fvPat chFieldENS_7volMeshEE13storeOldTimesEv]+0x56): more undefined references to `Foam::string::endsWith(std::__cxx11::basic_string <char, std::char_traits<char>, std::allocator<char> > const&) const' follow
Make/linux64GccDPInt32Opt/waveFoam.o:(.data.rel.ro._ZTVN4Foam8OPstreamE[_ZTVN4Foam8OPstreamE]+0x80): undefined reference to `Foam::UOPstream::writeQuoted(std::__cxx11::basic_ string<char, std::char_traits<char>, std::allocator<char> > const&, bool)'
collect2: error: ld returned 1 exit status
make: *** [/mnt/scratch/users/40218666/OpenFOAM/40218666-v1812/platforms/linux64GccDPInt32Opt/bin/waveFoam] Error 1
Making dependency list for source file waveIsoFoam.C
g++ -std=c++11 -m64 -DOPENFOAM=1812 -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wold-style-cast -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -Wno-attributes -Wno-unknown-pragmas -O3 -DNoRepository -ftemplate-depth-100 -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/transportModels/twoPhaseMixture/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/transportModels -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/transportModels/incompressible/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/transportModels/interfaceProperties/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/TurbulenceModels/turbulenceModels/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/TurbulenceModels/incompressible/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/transportModels/immiscibleIncompressibleTwoPhaseMixture/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/finiteVolume/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/dynamicFvMesh/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/meshTools/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/sampling/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/40218666-v1812/applications/utilities/waves2Foam/src/waves2Foam/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/40218666-v1812/applications/utilities/waves2Foam/src/waves2FoamSamplingNew/lnInclude -I/opt/gridware/local/el7/pkg/libs/gsl/2.4/gcc-4.8.5/include/gsl -DOFVERSION=1812 -DEXTBRANCH=0 -DOFPLUSBRANCH=1 -DXVERSION=0 -IlnInclude -I. -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/OpenFOAM/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/OSspecific/POSIX/lnInclude -fPIC -c waveIsoFoam.C -o Make/linux64GccDPInt32Opt/waveIsoFoam.o
g++ -std=c++11 -m64 -DOPENFOAM=1812 -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wold-style-cast -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -Wno-attributes -Wno-unknown-pragmas -O3 -DNoRepository -ftemplate-depth-100 -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/transportModels/twoPhaseMixture/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/transportModels -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/transportModels/incompressible/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/transportModels/interfaceProperties/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/TurbulenceModels/turbulenceModels/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/TurbulenceModels/incompressible/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/transportModels/immiscibleIncompressibleTwoPhaseMixture/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/finiteVolume/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/dynamicFvMesh/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/meshTools/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/sampling/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/40218666-v1812/applications/utilities/waves2Foam/src/waves2Foam/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/40218666-v1812/applications/utilities/waves2Foam/src/waves2FoamSamplingNew/lnInclude -I/opt/gridware/local/el7/pkg/libs/gsl/2.4/gcc-4.8.5/include/gsl -DOFVERSION=1812 -DEXTBRANCH=0 -DOFPLUSBRANCH=1 -DXVERSION=0 -IlnInclude -I. -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/OpenFOAM/lnInclude -I/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/src/OSspecific/POSIX/lnInclude -fPIC -Xlinker --add-needed -Xlinker --no-as-needed Make/linux64GccDPInt32Opt/waveIsoFoam.o -L/mnt/scratch/users/40218666/OpenFOAM/OpenFOAM-v1812/platforms/linux64GccDPInt32Opt/lib \
-limmiscibleIncompressibleTwoPhaseMixture -lturbulenceModels -lincompressibleTurbulenceModels -lfiniteVolume -ldynamicFvMesh -lfvOptions -lmeshTools -lsampling -L/mnt/scratch/users/40218666/OpenFOAM/40218666-v1812/platforms/linux64GccDPInt32Opt/lib -lwaves2Foam -lwaves2FoamSampling -L/opt/gridware/local/el7/pkg/libs/gsl/2.4/gcc-4.8.5/lib -lgsl -lgslcblas -lOpenFOAM -ldl \
-lm -o /mnt/scratch/users/40218666/OpenFOAM/40218666-v1812/platforms/linux64GccDPInt32Opt/bin/waveIsoFoam
Make/linux64GccDPInt32Opt/waveIsoFoam.o: In function `Foam::GeometricField<Foam::Vector<double>, Foam::fvPatchField, Foam::volMesh>::storeOldTimes() const':
waveIsoFoam.C:(.text._ZNK4Foam14GeometricFieldINS_ 6VectorIdEENS_12fvPatchFieldENS_7volMeshEE13storeO ldTimesEv[_ZNK4Foam14GeometricFieldINS_6VectorIdEENS_12fvPat chFieldENS_7volMeshEE13storeOldTimesEv]+0x56): undefined reference to `Foam::string::endsWith(std::__cxx11::basic_string <char, std::char_traits<char>, std::allocator<char> > const&) const'
Make/linux64GccDPInt32Opt/waveIsoFoam.o: In function `Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh>::storeOldTimes() const':
waveIsoFoam.C:(.text._ZNK4Foam14GeometricFieldIdNS _12fvPatchFieldENS_7volMeshEE13storeOldTimesEv[_ZNK4Foam14GeometricFieldIdNS_12fvPatchFieldENS_7v olMeshEE13storeOldTimesEv]+0x56): undefined reference to `Foam::string::endsWith(std::__cxx11::basic_string <char, std::char_traits<char>, std::allocator<char> > const&) const'
Make/linux64GccDPInt32Opt/waveIsoFoam.o: In function `Foam::GeometricField<double, Foam::fvsPatchField, Foam::surfaceMesh>::storeOldTimes() const':
waveIsoFoam.C:(.text._ZNK4Foam14GeometricFieldIdNS _13fvsPatchFieldENS_11surfaceMeshEE13storeOldTimes Ev[_ZNK4Foam14GeometricFieldIdNS_13fvsPatchFieldENS_1 1surfaceMeshEE13storeOldTimesEv]+0x56): undefined reference to `Foam::string::endsWith(std::__cxx11::basic_string <char, std::char_traits<char>, std::allocator<char> > const&) const'
Make/linux64GccDPInt32Opt/waveIsoFoam.o: In function `Foam::GeometricField<Foam::Vector<double>, Foam::fvsPatchField, Foam::surfaceMesh>::storeOldTimes() const':
waveIsoFoam.C:(.text._ZNK4Foam14GeometricFieldINS_ 6VectorIdEENS_13fvsPatchFieldENS_11surfaceMeshEE13 storeOldTimesEv[_ZNK4Foam14GeometricFieldINS_6VectorIdEENS_13fvsPa tchFieldENS_11surfaceMeshEE13storeOldTimesEv]+0x56): undefined reference to `Foam::string::endsWith(std::__cxx11::basic_string <char, std::char_traits<char>, std::allocator<char> > const&) const'
Make/linux64GccDPInt32Opt/waveIsoFoam.o: In function `Foam::GeometricField<Foam::Tensor<double>, Foam::fvsPatchField, Foam::surfaceMesh>::storeOldTimes() const':
waveIsoFoam.C:(.text._ZNK4Foam14GeometricFieldINS_ 6TensorIdEENS_13fvsPatchFieldENS_11surfaceMeshEE13 storeOldTimesEv[_ZNK4Foam14GeometricFieldINS_6TensorIdEENS_13fvsPa tchFieldENS_11surfaceMeshEE13storeOldTimesEv]+0x56): undefined reference to `Foam::string::endsWith(std::__cxx11::basic_string <char, std::char_traits<char>, std::allocator<char> > const&) const'
Make/linux64GccDPInt32Opt/waveIsoFoam.o:waveIsoFoam.C:(.text._ZNK4Foam14Geom etricFieldINS_6TensorIdEENS_12fvPatchFieldENS_7vol MeshEE13storeOldTimesEv[_ZNK4Foam14GeometricFieldINS_6TensorIdEENS_12fvPat chFieldENS_7volMeshEE13storeOldTimesEv]+0x56): more undefined references to `Foam::string::endsWith(std::__cxx11::basic_string <char, std::char_traits<char>, std::allocator<char> > const&) const' follow
Make/linux64GccDPInt32Opt/waveIsoFoam.o:(.data.rel.ro._ZTVN4Foam8OPstreamE[_ZTVN4Foam8OPstreamE]+0x80): undefined reference to `Foam::UOPstream::writeQuoted(std::__cxx11::basic_ string<char, std::char_traits<char>, std::allocator<char> > const&, bool)'
collect2: error: ld returned 1 exit status
make: *** [/mnt/scratch/users/40218666/OpenFOAM/40218666-v1812/platforms/linux64GccDPInt32Opt/bin/waveIsoFoam] Error 1


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