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[OpenFOAM.org] Compile OF 2.3 on Mac OS X .... the patch |
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April 16, 2014, 07:33 |
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#41 | ||
Senior Member
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Quote:
Quote:
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April 16, 2014, 09:32 |
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#42 |
New Member
Pierluigi Morra
Join Date: Apr 2013
Posts: 25
Rep Power: 13 |
Before I said something not true, the solver wasn't compiled, here it is where it gives errors:
Code:
/Users/myName/OpenFOAM/OpenFOAM-2.3.x/src/transportModels/incompressible/transportModel/transportModel.H:39:32: fatal error: primitiveFieldsFwd.H: No such file or directory compilation terminated. compilation terminated. make: *** [Make/darwinIntel64Gcc46DPOpt/driftFluxFoam.o] Error 1 make: *** Waiting for unfinished jobs.... make: *** [Make/darwinIntel64Gcc46DPOpt/incompressibleTwoPhaseInteractingMixture.o] Error 1 EDIT: I tried to compile OpenFoam again and I managed to get something done with the following errors (found in the attachments). Note: I edited applications/solvers/multiphase/driftFluxFoam/Make/options file, added '-ltwoPhaseMixture \' line after 'EXE_LIBS = \' line without running ./Allwmake in driftFluxFoam folder. I would like to know if everything is working properly. The reason is that today I was talking to a classmate who has Ubuntu and told me I could find the tutorials in the run directory; I don't have a "run" directory in my OpenFoam directory, but I found the tutorials directory directly under the OpenFoam main directory, which is in my Sparse Image. Anyway, what should I do to check? Last edited by maCrobo; April 16, 2014 at 14:09. |
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April 19, 2014, 13:29 |
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#43 |
New Member
Youngkook Kim
Join Date: Jul 2013
Location: Singapore and South Korea
Posts: 20
Rep Power: 13 |
I have successfully installed OF 2.3.0 following the instruction in Alexey Matveichev's blog. Everything's okay except snappyHexMesh. Following error occurs with SHM(I'm not running parallel).
dyld: Symbol not found: __SCOTCHbgraphbipartststratab Referenced from: /Users/totalart/OpenFOAM/OpenFOAM-2.3.0/platforms/darwinIntel64ClangDPOpt/lib/openmpi-system/libptscotchDecomp.so Expected in: flat namespace in /Users/totalart/OpenFOAM/OpenFOAM-2.3.0/platforms/darwinIntel64ClangDPOpt/lib/openmpi-system/libptscotchDecomp.so Trace/BPT trap: 5 In the Allwmake log, there was no error but warnings only. Anyone can advise what the problem is? Many Thanks, Young-kook |
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April 19, 2014, 13:44 |
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#44 |
Senior Member
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Hi,
I've reproduced the problem. I'll try to fix it and post updated patch during weekend. |
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April 21, 2014, 15:05 |
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#45 |
Senior Member
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Hi,
well, it appeared that previous patch had more problems than I though. So here is a new patch for 2.3.0 - https://bitbucket.org/mrklein/openfo...20140421.patch. Unfortunately, due to the problems with dynamicCode in previous patch, you need to rebuild everything. The list of bugs in previous patch that was fixed in the new one: - mess with DYLD_LIBRARY_PATH, now I think it is finally correct - error in Allwmake for ptscotch decomposition method (this was the reason for the error) - error in wmake/Makefile (OpenFOAM code expected dynamic library to have extension .dylib while in Makefile it was .so, and that breaks dynamicCode functionality) - Clang over-optimization of limited schemes that lead to FPE |
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April 23, 2014, 10:42 |
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#46 |
New Member
Youngkook Kim
Join Date: Jul 2013
Location: Singapore and South Korea
Posts: 20
Rep Power: 13 |
Hi Alexey,
SnappyHexMesh works well now. It seems everything okay so far. Thanks a lot! |
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April 23, 2014, 13:47 |
OpenFOAM-2.3.x - DriftFluxFoam Error 1
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#47 |
New Member
Reamonn Mac Reamoinn
Join Date: Mar 2014
Posts: 7
Rep Power: 12 |
Hi,
I am trying to install OpenFOAM-2.3.x on Mac OS Mavericks and I am getting an error I have been unable to resolve. I am new to using the Terminal and I am new to OpenFOAM. I downloaded the latest version of OpenFOAM from the website and have installed it following the instructions that can be found at: http://openfoamwiki.net/index.php/In...OpenFOAM_2.2.2 albeit somewhat modified as per the README instructions associated with the OpenFOAM-2.3.0 patch: http://sourceforge.net/p/openfoam-ex...ches/MacPatch/ However, I keep getting the same error and I am not sure how to rectify it. make[2]: *** [/Users/username/OpenFOAM/OpenFOAM-2.3.x/platforms/darwinIntel64Gcc46DPOpt/bin/driftFluxFoam] Error 1 make[1]: *** [driftFluxFoam] Error 2 make[1]: Target `application' not remade because of errors. make: *** [multiphase] Error 2 make: Target `application' not remade because of errors. In this instance, I did not have ParaView installed on my system and I got the following error. ERROR: ParaView not found in /Users/username/OpenFOAM/ThirdParty-2.3.x/platforms/darwinIntel64Gcc46/ParaView-4.1.0 But even if I do have ParaView installed when installing OpenFOAM, I still get the same errors listed above. Please find the appropriate log file attached. Hoping you can help. Réamonn |
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April 23, 2014, 14:20 |
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#48 |
Senior Member
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Hi,
1. If you take a look at the line above ERROR, you'll see Code:
WARN: PV3 readers not building: ParaView_VERSION=4.1.0 2. Are you planning to use driftFluxFoam? If no, you can also ignore the error. If yes, you need to modify Make/options of this solver as it seems that -ltwoPahseMixture is missing there. Last edited by alexeym; April 23, 2014 at 16:27. Reason: typo |
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April 23, 2014, 16:22 |
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#49 |
New Member
Reamonn Mac Reamoinn
Join Date: Mar 2014
Posts: 7
Rep Power: 12 |
Thanks Alexey,
At this stage I am just trying to expose myself to OpenFOAM and become familliar with it. Therefore, I have no specific plans to use DriftFluxFoam. Réamonn |
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April 24, 2014, 07:30 |
How to fix build of driftFluxFoam
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#50 |
Senior Member
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As there were two posts with error in compilation of this solver, I've decided to post a way to correct it. The guide is valid for commit 6f6bc2f78679cffacf479cb58cc74497bbf3963c (IIRC there's no such problem on Linux, so guess this correction will be valid for later commits as error won't be fixed in repository).
1. Go to $FOAM_APP/solvers/multiphase/driftFluxFoam 2. Open Make/options in an editor 3. Make it look like: Code:
EXE_INC = \ -IincompressibleTwoPhaseInteractingMixture \ -ImixtureViscosityModels/lnInclude \ -I$(LIB_SRC)/finiteVolume/lnInclude \ -I$(LIB_SRC)/meshTools/lnInclude \ -I$(LIB_SRC)/sampling/lnInclude \ -I$(LIB_SRC)/fvOptions/lnInclude \ -I$(LIB_SRC)/transportModels \ -I$(LIB_SRC)/transportModels/twoPhaseMixture/lnInclude \ -I$(LIB_SRC)/transportModels/incompressible/lnInclude \ -I$(LIB_SRC)/transportModels/interfaceProperties/lnInclude \ -I./relativeVelocityModels/lnInclude EXE_LIBS = \ -lfiniteVolume \ -lmeshTools \ -lsampling \ -lfvOptions \ -lincompressibleTransportModels \ -ltwoPhaseMixture \ -ldriftFluxTransportModels \ -ldriftFluxRelativeVelocityModels 4. run wmake Solver should compile now without errors. |
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April 28, 2014, 17:32 |
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#51 |
New Member
Reamonn Mac Reamoinn
Join Date: Mar 2014
Posts: 7
Rep Power: 12 |
Alexey,
Thanks for the help. I have OpenFOAM and ParaView installed and working now. I also included driftFluxFoam correction also and it worked well. Réamonn |
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May 8, 2014, 15:04 |
Errors in compiling
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#52 |
New Member
Join Date: May 2014
Posts: 1
Rep Power: 0 |
Hi guys
I followed the guide and read through this thread. I tried implementing all the suggestions, though, I can't compile yet. I'd love to receive your help, thanks a lot. There are two things to point out 1) the message when I 'source etc/bashrc' which is majesty:OpenFOAM-2.3.x ashleybrooks$ source etc/bashrc -bash: /Users/ashleybrooks/OpenFOAM/OpenFOAM-2.3.x/bin/foamEtcFile: No such file or directory -bash: /Users/ashleybrooks/OpenFOAM/OpenFOAM-2.3.x/bin/foamCleanPath: No such file or directory -bash: /Users/ashleybrooks/OpenFOAM/OpenFOAM-2.3.x/bin/foamCleanPath: No such file or directory -bash: /Users/ashleybrooks/OpenFOAM/OpenFOAM-2.3.x/bin/foamCleanPath: No such file or directory -bash: /Users/ashleybrooks/OpenFOAM/OpenFOAM-2.3.x/bin/foamCleanPath: No such file or directory -bash: /Users/ashleybrooks/OpenFOAM/OpenFOAM-2.3.x/etc/config/settings.sh: No such file or directory -bash: /Users/ashleybrooks/OpenFOAM/OpenFOAM-2.3.x/etc/config/aliases.sh: No such file or directory -bash: /Users/ashleybrooks/OpenFOAM/OpenFOAM-2.3.x/bin/foamEtcFile: No such file or directory -bash: /Users/ashleybrooks/OpenFOAM/OpenFOAM-2.3.x/bin/foamEtcFile: No such file or directory -bash: /Users/ashleybrooks/OpenFOAM/OpenFOAM-2.3.x/bin/foamEtcFile: No such file or directory -bash: /Users/ashleybrooks/OpenFOAM/OpenFOAM-2.3.x/bin/foamEtcFile: No such file or directory -bash: /Users/ashleybrooks/OpenFOAM/OpenFOAM-2.3.x/bin/foamCleanPath: No such file or directory -bash: /Users/ashleybrooks/OpenFOAM/OpenFOAM-2.3.x/bin/foamCleanPath: No such file or directory -bash: /Users/ashleybrooks/OpenFOAM/OpenFOAM-2.3.x/bin/foamCleanPath: No such file or directory -bash: ulimit: open files: cannot modify limit: Operation not permitted 2) the consequent error message majesty:OpenFOAM-2.3.x ashleybrooks$ ./Allwmake 2>&1 | tee logName.log ./Allwmake: line 4: wmakeCheckPwd: command not found Error: Current directory is not $WM_PROJECT_DIR The environment variables are inconsistent with the installation. Check the OpenFOAM entries in your dot-files and source them. |
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May 9, 2014, 04:05 |
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#53 |
Senior Member
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Hi,
it's hard to tell where the problem is (but I guess it's somewhere around foamInstall= line in bashrc). Is the disk image mounted to $HOME/OpenFOAM? Did you modify bashrc? Can you show bashrc if you did modifications? |
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May 13, 2014, 02:32 |
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#54 |
New Member
Juimo Pierre
Join Date: Aug 2012
Posts: 13
Rep Power: 14 |
Hi,
I am trying to install OpenFOAM-2.3.x on Mac OS Mavericks and I am getting an error I have been unable to resolve. I am new to using the Terminal and I am new to OpenFOAM. 1 error generated. make[2]: *** [Make/darwinIntel64ClangDPOpt/tractionDisplacementCorrectionFvPatchVectorField.o] Error 1 SOURCE=solidEquilibriumDisplacementFoam.C ; clang++ -m64 -DdarwinIntel64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -Wno-overloaded-virtual -Wno-unused-comparison -O3 -DNoRepository -ftemplate-depth-100 -I/Users/Mowa/OpenFOAM/OpenFOAM-2.3.0/src/finiteVolume/lnInclude -ItractionDisplacementCorrectionStress -I../solidDisplacementFoam -IlnInclude -I. -I/Users/Mowa/OpenFOAM/OpenFOAM-2.3.0/src/OpenFOAM/lnInclude -I/Users/Mowa/OpenFOAM/OpenFOAM-2.3.0/src/OSspecific/POSIX/lnInclude -fPIC -Ddarwin -c $SOURCE -o Make/darwinIntel64ClangDPOpt/solidEquilibriumDisplacementFoam.o In file included from solidEquilibriumDisplacementFoam.C:38: In file included from /Users/Mowa/OpenFOAM/OpenFOAM-2.3.0/src/finiteVolume/lnInclude/fvCFD.H:7: In file included from /Users/Mowa/OpenFOAM/OpenFOAM-2.3.0/src/finiteVolume/lnInclude/fvMesh.H:50: In file included from /Users/Mowa/OpenFOAM/OpenFOAM-2.3.0/src/OpenFOAM/lnInclude/polyMesh.H:45: In file included from /Users/Mowa/OpenFOAM/OpenFOAM-2.3.0/src/OpenFOAM/lnInclude/primitiveMesh.H:54: In file included from /Users/Mowa/OpenFOAM/OpenFOAM-2.3.0/src/OpenFOAM/lnInclude/edgeList.H:32: In file included from /Users/Mowa/OpenFOAM/OpenFOAM-2.3.0/src/OpenFOAM/lnInclude/edge.H:41: In file included from /Users/Mowa/OpenFOAM/OpenFOAM-2.3.0/src/OpenFOAM/lnInclude/linePointRef.H:36: /Users/Mowa/OpenFOAM/OpenFOAM-2.3.0/src/OpenFOAM/lnInclude/line.H:39:10: fatal error: 'PointHit.H' file not found #include "PointHit.H" ^ 1 error generated. make[2]: *** [Make/darwinIntel64ClangDPOpt/solidEquilibriumDisplacementFoam.o] Error 1 make[2]: Target `/Users/Mowa/OpenFOAM/OpenFOAM-2.3.0/platforms/darwinIntel64ClangDPOpt/bin/solidEquilibriumDisplacementFoam' not remade because of errors. make[1]: *** [solidEquilibriumDisplacementFoam] Error 2 make[1]: Target `application' not remade because of errors. make: *** [stressAnalysis] Error 2 make: Target `application' not remade because of |
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May 13, 2014, 08:07 |
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#56 |
Senior Member
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Well, if you really checked out sources on case insensitive FS first and after copied them into disk image, then you have to delete these sources, check out them from git repository into disk image (with case sensitive FS) directly and proceed with compilation. I.e. algorithm is something like this:
I can if I have to, otherwise I prefer to speak English. |
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May 13, 2014, 12:56 |
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#57 | |
Member
J.-H. Wang
Join Date: Oct 2010
Posts: 72
Rep Power: 16 |
Quote:
I am newbie to OpenFOAM. The installation attempt is made on OS X 10.9.2. I got an Error for [dummysizes] and [scotch], which I think is related to openmpi? The error messages are as follows: Code:
gcc-mp-4.6 -O3 -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict=__restrict -DSCOTCH_VERSION=6 -DSCOTCH_RELEASE=0 -DSCOTCH_PATCHLEVEL=0 dummysizes.c -o dummysizes -Xlinker --no-as-needed -lz -lm -lrt ld: unknown option: --no-as-needed collect2: ld returned 1 exit status make[2]: *** [dummysizes] Error 1 make[1]: *** [scotch] Error 2 make: *** [scotch] Error 2 + make realclean Code:
gcc-mp-4.6 -O3 -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict=__restrict -DSCOTCH_VERSION=6 -DSCOTCH_RELEASE=0 -DSCOTCH_PATCHLEVEL=0 dummysizes.c -o dummysizes -Xlinker --no-as-needed -lz -lm -lrt ld: unknown option: --no-as-needed collect2: ld returned 1 exit status make[2]: *** [dummysizes] Error 1 make[1]: *** [scotch] Error 2 make: *** [ptscotch] Error 2 + make realclean HTML Code:
http://matveichev.blogspot.co.uk/2014/02/building-openfoam-230-on-os-x.html I can for sure just run the whole process again since I know where is the problem (or I think I know). I am just taking this as an opportunity to educate myself about how things work, thanks a lot. JHW |
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May 14, 2014, 08:13 |
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#58 |
Senior Member
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Hi,
I don't know much about building OF on OS X with Macport's gcc (I've used it successfully 2 years ago for 2.1.1, after I used Linux, and finally recently I've used clang to build OF on OS X). Concerning your question about scotch, I've used 'grep -r lscotch *' and 'grep -r lptscotch *' in $WM_PROJECT_DIR to get rough estimation of the applications and libraries using Scotch library, and I guess you won't be able to use: foamyHexMesh renumberMesh decomposePar (with scotch decomposition method) foamyQuadMesh snappyHexMesh redistributePar Also, since you're referencing to the post where I used clang to build OpenFOAM and your error is with gcc, I don't know what's gone wrong during installation process. |
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May 14, 2014, 09:23 |
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#59 | ||
Senior Member
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Hi,
Quote:
1. Create disk image with case sensitive file system. There is a guide in wiki with pictures but I prefer CLI interface: Code:
$ cd $ hdiutil create -size 4.4g -type SPARSEBUNDLE -fs HFSX -volname OpenFOAM -fsargs -s OpenFOAM.sparsebundle Quote:
Code:
$ mkdir -p $HOME/OpenFOAM $ hdiutil attach -mountpoint $HOME/OpenFOAM OpenFOAM.sparsebundle Code:
$ cd $HOME/OpenFOAM $ git clone git://github.com/OpenFOAM/OpenFOAM-2.3.x.git Code:
$ cd OpenFOAM-2.3.x $ curl -L http://sourceforge.net/p/openfoam-extend/svn/HEAD/tree/trunk/Breeder_2.3/distroPatches/MacPatch/OpenFOAM-2.3.x-Mac.patch?format=raw > OpenFOAM-2.3.x-Mac.patch $ patch -p1 < OpenFOAM-2.3.x-Mac.patch After you just Code:
$ source etc/bashrc $ ./Allwmake > log.Allwmake 2>&1 |
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May 14, 2014, 12:33 |
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#60 | |
Senior Member
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If you read the first message of the thread:
Quote:
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