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[OpenFOAM.org] decomposePar: no available formula for scotch

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Old   September 6, 2015, 05:25
Default decomposePar: no available formula for scotch
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Dear all,

I somehow screwed my OpenFOAM installation. After installing gnuplot via homebrew I am getting the following problems when mounting the OpenFOAM sparsebundle:

Code:
Last login: Sun Sep  6 10:27:14 on ttys000
kates-mbp:~ kateeisenhower$ hdiutil attach -mountpoint $HOME/OpenFOAM OpenFOAM.sparsebundle
/dev/disk2          	GUID_partition_scheme          	
/dev/disk2s1        	EFI                            	
/dev/disk2s2        	Apple_HFS                      	/Users/kateeisenhower/OpenFOAM
kates-mbp:~ kateeisenhower$ source $HOME/OpenFOAM/OpenFOAM-2.3.1/etc/bashrc
-bash: openmpi_help: command not found
Using paraview in directory /Applications/paraview.app
-bash: boost_help: command not found
Error: No available formula for scotch 
kates-mbp:~ kateeisenhower$ checkMesh -help
Apps like checkMesh are running fine. But if I try the command
Code:
decomposePar
, I'm getting the following output:

Code:
kates-mbp:100mmhkverfeinert_symm kateeisenhower$ decomposePar
dyld: Library not loaded: /usr/local/lib/libscotch.dylib
  Referenced from: /Users/kateeisenhower/OpenFOAM/OpenFOAM-2.3.1/platforms/darwinIntel64ClangDPOpt/lib/libscotchDecomp.dylib
  Reason: image not found
Trace/BPT trap: 5
kates-mbp:100mmhkverfeinert_symm kateeisenhower$
Any help would be appreciated!

Best regards,

Kate
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Old   September 7, 2015, 02:19
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Hi,

Quote:
Originally Posted by KateEisenhower View Post
...
Code:
-bash: openmpi_help: command not found
Using paraview in directory /Applications/paraview.app
-bash: boost_help: command not found
Error: No available formula for scotch 
kates-mbp:~ kateeisenhower$ checkMesh -help
...
This part looks interesting. It seems you somehow corrupted Homebrew's formula repository. Could you...

1. Describe in more details "...installing gnuplot via homebrew...".
2. Post output of "brew doctor".
3. (optional) Describe the reason for gnuplot installation (plot residuals?), maybe there is a way to do it without gnuplot.
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Old   October 21, 2015, 11:49
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Hi Alexey,

and sorry for the late answer.

1. I tried to install it quick and dirty, that's why I can't remember the detailed steps.
2. I'll do it when I have access to this computer again.
3. Yes I am plotting residuals with gunplot (script from this forum) and use it to plot aerodynamic coefficients (custom script).

Best regards,

Kate
Quote:
Originally Posted by alexeym View Post
Hi,



This part looks interesting. It seems you somehow corrupted Homebrew's formula repository. Could you...

1. Describe in more details "...installing gnuplot via homebrew...".
2. Post output of "brew doctor".
3. (optional) Describe the reason for gnuplot installation (plot residuals?), maybe there is a way to do it without gnuplot.
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Old   October 21, 2015, 13:33
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Alexey Matveichev
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Hi,

Though there could be another explanation. You have installed OpenFOAM when Scotch was in homebrew repository, now it is moved to homebrew/science repository. So before installing Scotch you have to do

Code:
$ brew tap homebrew/science
Though it is rather strange that you have all these "command not found" errors. Did you always have them?
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Old   October 22, 2015, 02:16
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Hi,

thanks, I will try this. No, previously I didn't get this kind of error.

Kate
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Old   November 1, 2015, 07:01
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Hi Alexey,

here´s the output of brew doctor (attached file). Please notice that I am going to sell this MacBook anyhow. So it doesn't matter anymore. Of course if you want me to test anything because you are interested in these kind of problems, I can do that.

Best regards,

Kate
Attached Files
File Type: txt brew_doctor.txt (17.6 KB, 2 views)
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Old   November 1, 2015, 07:16
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Alexey Matveichev
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Hi,

Well, you have "mixed" Homebrew and Macports, this coctail can lead to all sorts of strange behaviour.

Thank you for the brew doctor output and we can close this thread with conclusion "Do not install Macport and Homebrew (unless you know what you are doing) since they both install symlinks in /usr/local/{bin, include, lib, share} folders and this can lead to VERY strange results."
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