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[foam-extend.org] foam-extend-4.1 cannot compile on Centos8

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Old   July 22, 2020, 01:27
Default foam-extend-4.1 cannot compile on Centos8
  #1
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YS
Join Date: Jan 2010
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Hello,

I am trying to install the foam-extend-4.1 from source code on the following platform: centos-release-8.2-2.2004.0.1.el8.x86_64. So far, I have succesfully installed from source the following OF versions: OpenFOAM-v2006, OpenFOAM-v1912, OpenFOAM-dev. The compilation of OF-extend-4.1 failed from the beginning however. Any clue please?

The log file is as follows:

++++++++++++++++++++++++++++++++++++
make: Nothing to be done for 'all'.

This system rpm command: rpm

========================================
Starting ThirdParty Allwmake.pre
========================================


This system rpm command: rpm

========================================
Starting ThirdParty AllMake: Stage1
========================================

========================================
Done ThirdParty AllMake: Stage1
========================================


This system rpm command: rpm

========================================
Starting ThirdParty AllMake: Stage2
========================================

Building openmpi 1.8.8
Package name : openmpi-1.8.8
Package URL : https://www.open-mpi.org/software/om...i-1.8.8.tar.gz
RPM spec file name: openmpi-1.8.8.spec
RPM file name :
Additional flags : --define
Updating the ThirdParty environment variables before building package openmpi-1.8.8
RPM file name : /scratch/OpenFOAM/OpenFOAM-extend-4.1/ThirdParty/rpmBuild/RPMS/x86_64/openmpi-1.8.8-linux64GccDPInt32Opt.x86_64.rpm
Package openmpi-1.8.8 is already installed
Done installing package

========================================
Done ThirdParty AllMake: Stage2
========================================


This system rpm command: rpm

========================================
Starting ThirdParty AllMake: Stage3
========================================

Building metis 5.1.0
Package name : metis-5.1.0
Package URL : http://downloads.sourceforge.net/pro...s-5.1.0.tar.gz
RPM spec file name: metis-5.1.0.spec
RPM file name :
Additional flags :
Updating the ThirdParty environment variables before building package metis-5.1.0
RPM file name : /scratch/OpenFOAM/OpenFOAM-extend-4.1/ThirdParty/rpmBuild/RPMS/x86_64/metis-5.1.0-linux64GccDPInt32Opt.x86_64.rpm
Package metis-5.1.0 is already installed
Done installing package

Building ParMGridGen 1.0
Package name : ParMGridGen-1.0
Package URL : http://downloads.sourceforge.net/pro...Gen-1.0.tar.gz
RPM spec file name: ParMGridGen-1.0.spec
RPM file name :
Additional flags :
Updating the ThirdParty environment variables before building package ParMGridGen-1.0
RPM file name : /scratch/OpenFOAM/OpenFOAM-extend-4.1/ThirdParty/rpmBuild/RPMS/x86_64/ParMGridGen-1.0-linux64GccDPInt32Opt.x86_64.rpm
Package ParMGridGen-1.0 is already installed
Done installing package

Building Libccmio 2.6.1
Package name : libccmio-2.6.1
Package URL : http://downloads.sourceforge.net/pro...o-2.6.1.tar.gz
RPM spec file name: libccmio-2.6.1.spec
RPM file name :
Additional flags :
Updating the ThirdParty environment variables before building package libccmio-2.6.1
RPM file name : /scratch/OpenFOAM/OpenFOAM-extend-4.1/ThirdParty/rpmBuild/RPMS/x86_64/libccmio-2.6.1-linux64GccDPInt32Opt.x86_64.rpm
Package libccmio-2.6.1 is already installed
Done installing package

Building Mesquite 2.3.0
Package name : mesquite-2.3.0
Package URL : https://software.sandia.gov/mesquite...e-2.3.0.tar.gz
RPM spec file name: mesquite-2.3.0.spec
RPM file name :
Additional flags :
Updating the ThirdParty environment variables before building package mesquite-2.3.0
RPM file name : /scratch/OpenFOAM/OpenFOAM-extend-4.1/ThirdParty/rpmBuild/RPMS/x86_64/mesquite-2.3.0-linux64GccDPInt32Opt.x86_64.rpm
Package mesquite-2.3.0 is already installed
Done installing package

Building Scotch 6.0.4
Package name : scotch-6.0.4
Package URL : http://downloads.sourceforge.net/pro...h_6.0.4.tar.gz
RPM spec file name: scotch-6.0.4.spec
RPM file name :
Additional flags :
Updating the ThirdParty environment variables before building package scotch-6.0.4
RPM file name : /scratch/OpenFOAM/OpenFOAM-extend-4.1/ThirdParty/rpmBuild/RPMS/x86_64/scotch-6.0.4-linux64GccDPInt32Opt.x86_64.rpm
Package scotch-6.0.4 is already installed
Done installing package

Building ParMetis 4.0.3
Package name : parmetis-4.0.3
Package URL : http://glaros.dtc.umn.edu/gkhome/fet...s-4.0.3.tar.gz
RPM spec file name: parmetis-4.0.3.spec
RPM file name :
Additional flags :
Updating the ThirdParty environment variables before building package parmetis-4.0.3
RPM file name : /scratch/OpenFOAM/OpenFOAM-extend-4.1/ThirdParty/rpmBuild/RPMS/x86_64/parmetis-4.0.3-linux64GccDPInt32Opt.x86_64.rpm
Package parmetis-4.0.3 is already installed
Done installing package

Building PyFoam 0.6.9
Package name : PyFoam-0.6.9
Package URL : https://files.pythonhosted.org/packa...m-0.6.9.tar.gz
RPM spec file name: PyFoam-0.6.9.spec
RPM file name : PyFoam-0.6.9-1.noarch
Additional flags :
Updating the ThirdParty environment variables before building package PyFoam-0.6.9
RPM file name : /scratch/OpenFOAM/OpenFOAM-extend-4.1/ThirdParty/rpmBuild/RPMS/noarch/PyFoam-0.6.9-1.noarch.rpm
Making package PyFoam-0.6.9 using RPM.
Building package PyFoam-0.6.9 using SPEC file : PyFoam-0.6.9.spec. Optional args:
Executing(%prep): /bin/sh -e /scratch/OpenFOAM/OpenFOAM-extend-4.1/ThirdParty/rpmBuild/tmp/rpm-tmp.m2lM2Z
+ umask 022
+ cd /scratch/OpenFOAM/OpenFOAM-extend-4.1/ThirdParty/rpmBuild/BUILD
+ cd /scratch/OpenFOAM/OpenFOAM-extend-4.1/ThirdParty/rpmBuild/BUILD
+ rm -rf PyFoam-0.6.9
+ /usr/bin/gzip -dc /scratch/OpenFOAM/OpenFOAM-extend-4.1/ThirdParty/rpmBuild/SOURCES/PyFoam-0.6.9.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd PyFoam-0.6.9
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ exit 0
Executing(%build): /bin/sh -e /scratch/OpenFOAM/OpenFOAM-extend-4.1/ThirdParty/rpmBuild/tmp/rpm-tmp.PBre33
+ umask 022
+ cd /scratch/OpenFOAM/OpenFOAM-extend-4.1/ThirdParty/rpmBuild/BUILD
+ cd PyFoam-0.6.9
+ python setup.py build --executable '/usr/bin/env python'
/scratch/OpenFOAM/OpenFOAM-extend-4.1/ThirdParty/rpmBuild/tmp/rpm-tmp.PBre33: line 35: python: command not found
error: Bad exit status from /scratch/OpenFOAM/OpenFOAM-extend-4.1/ThirdParty/rpmBuild/tmp/rpm-tmp.PBre33 (%build)


RPM build errors:
Bad exit status from /scratch/OpenFOAM/OpenFOAM-extend-4.1/ThirdParty/rpmBuild/tmp/rpm-tmp.PBre33 (%build)
Installing package: PyFoam-0.6.9
Uninstalling PyFoam-0.6.9 using RPM: PyFoam-0.6.9-1.noarch
Installing PyFoam-0.6.9 using RPM file: /scratch/OpenFOAM/OpenFOAM-extend-4.1/ThirdParty/rpmBuild/RPMS/noarch/PyFoam-0.6.9-1.noarch.rpm
error: open of /scratch/OpenFOAM/OpenFOAM-extend-4.1/ThirdParty/rpmBuild/RPMS/noarch/PyFoam-0.6.9-1.noarch.rpm failed: No such file or directory
Done installing package

Building hwloc 2.0.1
Package name : hwloc-2.0.1
Package URL : http://www.open-mpi.org/software/hwl...c-2.0.1.tar.gz
RPM spec file name: hwloc-2.0.1.spec
RPM file name :
Additional flags :
Updating the ThirdParty environment variables before building package hwloc-2.0.1
RPM file name : /scratch/OpenFOAM/OpenFOAM-extend-4.1/ThirdParty/rpmBuild/RPMS/x86_64/hwloc-2.0.1-linux64GccDPInt32Opt.x86_64.rpm
Package hwloc-2.0.1 is already installed
Done installing package

========================================
Done ThirdParty AllMake: Stage3
========================================


This system rpm command: rpm

========================================
Starting ThirdParty AllMake: Stage4
========================================

Using system installed QT

========================================
Done ThirdParty AllMake: Stage4
========================================

========================================
Done ThirdParty Allwmake.pre
========================================

+ wmakePrintBuild -check
same version as previous build
+ wmakeLnInclude foam
+ wmakeLnInclude meshTools
+ wmakeLnInclude OSspecific/POSIX
+ wmake libo OSspecific/POSIX
SOURCE=signals/sigFpe.C ; g++ -std=c++11 -m64 -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3 -DNoRepository -ftemplate-depth-200 -IlnInclude -I. -I/scratch/OpenFOAM/OpenFOAM-extend-4.1/src/OpenFOAM/lnInclude -I/scratch/OpenFOAM/OpenFOAM-extend-4.1/src/OSspecific/POSIX/lnInclude -fPIC -c $SOURCE -o Make/linux64GccDPInt32Opt/sigFpe.o
SOURCE=signals/sigSegv.C ; g++ -std=c++11 -m64 -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3 -DNoRepository -ftemplate-depth-200 -IlnInclude -I. -I/scratch/OpenFOAM/OpenFOAM-extend-4.1/src/OpenFOAM/lnInclude -I/scratch/OpenFOAM/OpenFOAM-extend-4.1/src/OSspecific/POSIX/lnInclude -fPIC -c $SOURCE -o Make/linux64GccDPInt32Opt/sigSegv.o
SOURCE=signals/sigInt.C ; g++ -std=c++11 -m64 -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3 -DNoRepository -ftemplate-depth-200 -IlnInclude -I. -I/scratch/OpenFOAM/OpenFOAM-extend-4.1/src/OpenFOAM/lnInclude -I/scratch/OpenFOAM/OpenFOAM-extend-4.1/src/OSspecific/POSIX/lnInclude -fPIC -c $SOURCE -o Make/linux64GccDPInt32Opt/sigInt.o
SOURCE=signals/sigQuit.C ; g++ -std=c++11 -m64 -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3 -DNoRepository -ftemplate-depth-200 -IlnInclude -I. -I/scratch/OpenFOAM/OpenFOAM-extend-4.1/src/OpenFOAM/lnInclude -I/scratch/OpenFOAM/OpenFOAM-extend-4.1/src/OSspecific/POSIX/lnInclude -fPIC -c $SOURCE -o Make/linux64GccDPInt32Opt/sigQuit.o
SOURCE=regExp.C ; g++ -std=c++11 -m64 -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3 -DNoRepository -ftemplate-depth-200 -IlnInclude -I. -I/scratch/OpenFOAM/OpenFOAM-extend-4.1/src/OpenFOAM/lnInclude -I/scratch/OpenFOAM/OpenFOAM-extend-4.1/src/OSspecific/POSIX/lnInclude -fPIC -c $SOURCE -o Make/linux64GccDPInt32Opt/regExp.o
SOURCE=timer.C ; g++ -std=c++11 -m64 -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3 -DNoRepository -ftemplate-depth-200 -IlnInclude -I. -I/scratch/OpenFOAM/OpenFOAM-extend-4.1/src/OpenFOAM/lnInclude -I/scratch/OpenFOAM/OpenFOAM-extend-4.1/src/OSspecific/POSIX/lnInclude -fPIC -c $SOURCE -o Make/linux64GccDPInt32Opt/timer.o
SOURCE=fileStat.C ; g++ -std=c++11 -m64 -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3 -DNoRepository -ftemplate-depth-200 -IlnInclude -I. -I/scratch/OpenFOAM/OpenFOAM-extend-4.1/src/OpenFOAM/lnInclude -I/scratch/OpenFOAM/OpenFOAM-extend-4.1/src/OSspecific/POSIX/lnInclude -fPIC -c $SOURCE -o Make/linux64GccDPInt32Opt/fileStat.o
SOURCE=POSIX.C ; g++ -std=c++11 -m64 -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3 -DNoRepository -ftemplate-depth-200 -IlnInclude -I. -I/scratch/OpenFOAM/OpenFOAM-extend-4.1/src/OpenFOAM/lnInclude -I/scratch/OpenFOAM/OpenFOAM-extend-4.1/src/OSspecific/POSIX/lnInclude -fPIC -c $SOURCE -o Make/linux64GccDPInt32Opt/POSIX.o
SOURCE=clockTime/clockTime.C ; g++ -std=c++11 -m64 -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3 -DNoRepository -ftemplate-depth-200 -IlnInclude -I. -I/scratch/OpenFOAM/OpenFOAM-extend-4.1/src/OpenFOAM/lnInclude -I/scratch/OpenFOAM/OpenFOAM-extend-4.1/src/OSspecific/POSIX/lnInclude -fPIC -c $SOURCE -o Make/linux64GccDPInt32Opt/clockTime.o
SOURCE=memInfo/memInfo.C ; g++ -std=c++11 -m64 -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3 -DNoRepository -ftemplate-depth-200 -IlnInclude -I. -I/scratch/OpenFOAM/OpenFOAM-extend-4.1/src/OpenFOAM/lnInclude -I/scratch/OpenFOAM/OpenFOAM-extend-4.1/src/OSspecific/POSIX/lnInclude -fPIC -c $SOURCE -o Make/linux64GccDPInt32Opt/memInfo.o
SOURCE=multiThreader/multiThreader.C ; g++ -std=c++11 -m64 -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3 -DNoRepository -ftemplate-depth-200 -IlnInclude -I. -I/scratch/OpenFOAM/OpenFOAM-extend-4.1/src/OpenFOAM/lnInclude -I/scratch/OpenFOAM/OpenFOAM-extend-4.1/src/OSspecific/POSIX/lnInclude -fPIC -c $SOURCE -o Make/linux64GccDPInt32Opt/multiThreader.o
SOURCE=fileMonitor.C ; g++ -std=c++11 -m64 -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3 -DNoRepository -ftemplate-depth-200 -IlnInclude -I. -I/scratch/OpenFOAM/OpenFOAM-extend-4.1/src/OpenFOAM/lnInclude -I/scratch/OpenFOAM/OpenFOAM-extend-4.1/src/OSspecific/POSIX/lnInclude -fPIC -c $SOURCE -o Make/linux64GccDPInt32Opt/fileMonitor.o
SOURCE=printStack.C ; g++ -std=c++11 -m64 -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3 -DNoRepository -ftemplate-depth-200 -IlnInclude -I. -I/scratch/OpenFOAM/OpenFOAM-extend-4.1/src/OpenFOAM/lnInclude -I/scratch/OpenFOAM/OpenFOAM-extend-4.1/src/OSspecific/POSIX/lnInclude -fPIC -c $SOURCE -o Make/linux64GccDPInt32Opt/printStack.o
signals/sigFpe.C:26:10: fatal error: error.H: No such file or directory
#include "error.H"
^~~~~~~~~
compilation terminated.
POSIX.C:33:10: fatal error: OSspecific.H: No such file or directory
#include "OSspecific.H"
^~~~~~~~~~~~~~
compilation terminated.
In file included from memInfo/memInfo.C:26:
memInfo/memInfo.H:41:10: fatal error: OSspecific.H: No such file or directory
#include "OSspecific.H"
^~~~~~~~~~~~~~
compilation terminated.
In file included from multiThreader/multiThreader.C:36:
multiThreader/multiThreader.H:52:10: fatal error: error.H: No such file or directory
#include "error.H"
^~~~~~~~~
compilation terminated.
make: *** [signals/sigFpe.dep:7: Make/linux64GccDPInt32Opt/sigFpe.o] Error 1
make: *** Waiting for unfinished jobs....
make: *** [POSIX.dep:9: Make/linux64GccDPInt32Opt/POSIX.o] Error 1
make: *** [memInfo/memInfo.dep:8: Make/linux64GccDPInt32Opt/memInfo.o] Error 1
make: *** [multiThreader/multiThreader.dep:7: Make/linux64GccDPInt32Opt/multiThreader.o] Error 1
timer.C:30:10: fatal error: error.H: No such file or directory
#include "error.H"
^~~~~~~~~
compilation terminated.
clockTime/clockTime.C:27:10: fatal error: scalar.H: No such file or directory
#include "scalar.H"
^~~~~~~~~~
compilation terminated.
make: *** [timer.dep:7: Make/linux64GccDPInt32Opt/timer.o] Error 1
printStack.C:26:10: fatal error: error.H: No such file or directory
#include "error.H"
^~~~~~~~~
signals/sigInt.C:27:10: fatal error: error.H: No such file or directory
#include "error.H"
^~~~~~~~~
signals/sigSegv.C:27:10: fatal error: error.H: No such file or directory
#include "error.H"
^~~~~~~~~
compilation terminated.
compilation terminated.
compilation terminated.
signals/sigQuit.C:27:10: fatal error: error.H: No such file or directory
#include "error.H"
^~~~~~~~~
compilation terminated.
make: *** [clockTime/clockTime.dep:7: Make/linux64GccDPInt32Opt/clockTime.o] Error 1
In file included from fileMonitor.C:26:
fileMonitor.H:46:10: fatal error: NamedEnum.H: No such file or directory
#include "NamedEnum.H"
^~~~~~~~~~~~~
compilation terminated.
In file included from fileStat.C:26:
fileStat.H:46:10: fatal error: label.H: No such file or directory
#include "label.H"
^~~~~~~~~
compilation terminated.
make: *** [printStack.dep:6: Make/linux64GccDPInt32Opt/printStack.o] Error 1
make: *** [signals/sigQuit.dep:7: Make/linux64GccDPInt32Opt/sigQuit.o] Error 1
make: *** [signals/sigSegv.dep:7: Make/linux64GccDPInt32Opt/sigSegv.o] Error 1
make: *** [signals/sigInt.dep:7: Make/linux64GccDPInt32Opt/sigInt.o] Error 1
make: *** [fileMonitor.dep:7: Make/linux64GccDPInt32Opt/fileMonitor.o] Error 1
make: *** [fileStat.dep:8: Make/linux64GccDPInt32Opt/fileStat.o] Error 1
regExp.C:29:10: fatal error: foamString.H: No such file or directory
#include "foamString.H"
^~~~~~~~~~~~~~
compilation terminated.
make: *** [regExp.dep:7: Make/linux64GccDPInt32Opt/regExp.o] Error 1
+ set +x

Note: ignore spurious warnings about missing mpicxx.h headers
+ wmake libso foam
SOURCE=global/global.Cver ; sed -e 's/VERSION_STRING/4.1/' -e 's/BUILD_STRING/4.1-e2e049bb04c7/' $SOURCE > Make/linux64GccDPInt32Opt/global.C; g++ -std=c++11 -m64 -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3 -DNoRepository -ftemplate-depth-200 -DOMPI_SKIP_MPICXX -I/scratch/OpenFOAM/OpenFOAM-extend-4.1/ThirdParty/packages/openmpi-1.8.8/platforms/linux64GccDPInt32Opt/include -I/scratch/OpenFOAM/OpenFOAM-extend-4.1/ThirdParty/zlib-1.2.3 -IlnInclude -I. -I/scratch/OpenFOAM/OpenFOAM-extend-4.1/src/OpenFOAM/lnInclude -I/scratch/OpenFOAM/OpenFOAM-extend-4.1/src/OSspecific/POSIX/lnInclude -fPIC -c Make/linux64GccDPInt32Opt/global.C -o Make/linux64GccDPInt32Opt/global.o
make: *** [global/global.dep:253: Make/linux64GccDPInt32Opt/global.o] Interrupt
Attached Files
File Type: txt log.Allwmake.firstInstall.txt (17.0 KB, 0 views)
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Old   July 22, 2020, 01:37
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  #2
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basically I am following this post to compile:

https://openfoamwiki.net/index.php/I...end-4.1/CentOS
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Old   July 22, 2020, 02:03
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Found solution...

The cause is that I changed the default installation folder name from 'foam' to 'OpenFOAM', and it leads to the result that the header files cannot be located properly. Kind of weired, right? After change the folder name back to 'foam', everything's fine.
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