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Old   August 31, 2022, 12:23
Default Parallel build of OF22.06
  #1
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Hi,

I am using WSL with Ubuntu 20.04 .

I am trying build OF22.06 in parallel with 12 cores.

I have allocated 20 GB of RAM to WSL and 10GB for SWAP.

My machine has 24 cores and 32 GB of RAM.

I am using GCC 9.4.0.

I am compiling OpenFOAM as:

Code:
./Allwmake -j 12 -q -l
However, I just noticed that I am getting the following error [internal compiler error: Segmentation fault]:

Code:
/home/tomJ/OpenFOAM/ThirdParty-v2206/sources/adios/ADIOS2-2.7.1/testing/adios2/engine/bp/TestBPWriteMultiblockRead.cpp: In member function ‘virtual void BPWriteMultiblockReadTest_ADIOS2BPWriteRead1D8ZeroBlock_Test::TestBody()’:
/home/tomJ/OpenFOAM/ThirdParty-v2206/sources/adios/ADIOS2-2.7.1/testing/adios2/engine/bp/TestBPWriteMultiblockRead.cpp:1364:1: internal compiler error: Segmentation fault
 1364 | }
      | ^
0x7f80c5e5108f ???
    /build/glibc-SzIz7B/glibc-2.31/signal/../sysdeps/unix/sysv/linux/x86_64/sigaction.c:0
0x7f80c5e32082 __libc_start_main
    ../csu/libc-start.c:308
Please submit a full bug report,
with preprocessed source if appropriate.
Please include the complete backtrace with any bug report.
See <file:///usr/share/doc/gcc-9/README.Bugs> for instructions.
make[2]: *** [testing/adios2/engine/bp/CMakeFiles/Test.Engine.BP.WriteMultiblockRead.Serial.dir/build.make:63: testing/adios2/engine/bp/CMakeFiles/Test.Engine.BP.WriteMultiblockRead.Serial.dir/TestBPWriteMultiblockRead.cpp.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:3886: testing/adios2/engine/bp/CMakeFiles/Test.Engine.BP.WriteMultiblockRead.Serial.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
It did not finish compilation, stopped in foamyMesh with:
Code:
g++ -std=c++11 -m64 -pthread -DOPENFOAM=2206 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wold-style-cast -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -Wno-attributes -Wno-unknown-pragmas -O0 -fdefault-inline -ggdb3 -DFULLDEBUG -DNoRepository -ftemplate-depth-100   -DNDEBUG  -DCGAL_INEXACT -DCGAL_HEADER_ONLY -I/home/tomJ/OpenFOAM/ThirdParty-v2206/platforms/linux64Gcc/boost_1_74_0/include -I/home/tomJ/OpenFOAM/ThirdParty-v2206/platforms/linux64Gcc/CGAL-4.14.3/include -Wno-old-style-cast -Wno-unused-local-typedefs -Wno-array-bounds -Wno-deprecated-declarations -fpermissive -I../conformalVoronoiMesh/lnInclude -I/home/tomJ/OpenFOAM/OpenFOAM-v2206/src/finiteVolume/lnInclude -I/home/tomJ/OpenFOAM/OpenFOAM-v2206/src/fileFormats/lnInclude -I/home/tomJ/OpenFOAM/OpenFOAM-v2206/src/surfMesh/lnInclude -I/home/tomJ/OpenFOAM/OpenFOAM-v2206/src/meshTools/lnInclude -I/home/tomJ/OpenFOAM/OpenFOAM-v2206/src/dynamicMesh/lnInclude -I/home/tomJ/OpenFOAM/OpenFOAM-v2206/src/parallel/decompose/decompositionMethods/lnInclude -I/home/tomJ/OpenFOAM/OpenFOAM-v2206/src/mesh/snappyHexMesh/lnInclude -IvectorTools -iquote. -IlnInclude -I/home/tomJ/OpenFOAM/OpenFOAM-v2206/src/OpenFOAM/lnInclude -I/home/tomJ/OpenFOAM/OpenFOAM-v2206/src/OSspecific/POSIX/lnInclude   -fPIC -Xlinker --add-needed -Xlinker --no-as-needed  /home/tomJ/OpenFOAM/OpenFOAM-v2206/build/linux64GccDPInt32Debug/applications/utilities/mesh/generation/foamyMesh/foamyHexMesh/foamyHexMesh.o -L/home/tomJ/OpenFOAM/OpenFOAM-v2206/platforms/linux64GccDPInt32Debug/lib \
     -L/home/tomJ/OpenFOAM/ThirdParty-v2206/platforms/linux64Gcc/boost_1_74_0/lib64 -lmpfr -lgmp -lconformalVoronoiMesh -lfileFormats -lsurfMesh -lmeshTools -ldecompositionMethods -ldecompose -L/home/tomJ/OpenFOAM/OpenFOAM-v2206/platforms/linux64GccDPInt32Debug/lib/dummy -lkahipDecomp -lmetisDecomp -lptscotchDecomp -lscotchDecomp -ldynamicMesh -lOpenFOAM -ldl  \
    -ggdb3 -DFULLDEBUG -lm -o /home/tomJ/OpenFOAM/OpenFOAM-v2206/platforms/linux64GccDPInt32Debug/bin/foamyHexMesh
Finish foamyMesh
I have asked to compile again and it compiled a bunch more things but still ended up with errors. I did it a 3rd time, it again compiled more stuff, but still with errors:

Code:
collect2: fatal error: ld terminated with signal 11 [Segmentation fault]
compilation terminated.
make[1]: *** [/home/tomJ/OpenFOAM/OpenFOAM-v2206/wmake/makefiles/general:150: /home/tomJ/OpenFOAM/OpenFOAM-v2206/platforms/linux64GccDPInt32Debug/bin/computeMoments] Error 1
make[1]: Target 'all' not remade because of errors.
make: *** [/home/tomJ/OpenFOAM/OpenFOAM-v2206/wmake/makefiles/apps:28: computeMoments] Error 2
g++ -std=c++11 -m64 -pthread -DOPENFOAM=2206 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wold-style-cast -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -Wno-attributes -Wno-unknown-pragmas -O0 -fdefault-inline -ggdb3 -DFULLDEBUG -DNoRepository -ftemplate-depth-100  -I/home/tomJ/OpenFOAM/OpenFOAM-v2206/src/finiteVolume/lnInclude -I/home/tomJ/OpenFOAM/OpenFOAM-v2206/src/fvOptions/lnInclude -I/home/tomJ/OpenFOAM/OpenFOAM-v2206/src/sampling/lnInclude -I/home/tomJ/OpenFOAM/OpenFOAM-v2206/src/meshTools/lnInclude -ImomentGenerationModels/lnInclude -I../../../src/mappedList -I../../../src/mappedPtrList -iquote. -IlnInclude -I/home/tomJ/OpenFOAM/OpenFOAM-v2206/src/OpenFOAM/lnInclude -I/home/tomJ/OpenFOAM/OpenFOAM-v2206/src/OSspecific/POSIX/lnInclude   -fPIC -Xlinker --add-needed -Xlinker --no-as-needed  /home/tomJ/OpenFOAM/OpenFOAM-v2206/build/linux64GccDPInt32Debug/modules/OpenQBMM/applications/utilities/generateMoments/generateMoments.o -L/home/tomJ/OpenFOAM/OpenFOAM-v2206/platforms/linux64GccDPInt32Debug/lib \
    -lfiniteVolume -lmeshTools -lfvOptions -lsampling -L/home/tomJ/OpenFOAM/OpenFOAM-v2206/platforms/linux64GccDPInt32Debug/lib -lmomentGenerationModels -lOpenFOAM -ldl  \
    -ggdb3 -DFULLDEBUG -lm -o /home/tomJ/OpenFOAM/OpenFOAM-v2206/platforms/linux64GccDPInt32Debug/bin/generateMoments
make: Target 'application' not remade because of errors.
wmake populationBalance
Code:
/usr/bin/ld: /home/tomJ/OpenFOAM/OpenFOAM-v2206/build/linux64GccDPInt32Debug/modules/OpenQBMM/applications/solvers/velocityDistributionTransport/diluteVdfTransportFoam/diluteVdfTransportFoam.o: unsupported relocation type 0x70
/usr/bin/ld: /home/tomJ/OpenFOAM/OpenFOAM-v2206/build/linux64GccDPInt32Debug/modules/OpenQBMM/applications/solvers/velocityDistributionTransport/diluteVdfTransportFoam/diluteVdfTransportFoam.o: unrecognized relocation type 0x70 in section `.debug_info'
/usr/bin/ld: is this version of the linker - (GNU Binutils for Ubuntu) 2.34 - out of date ?
/usr/bin/ld: final link failed: bad value
collect2: error: ld returned 1 exit status
make: *** [/home/tomJ/OpenFOAM/OpenFOAM-v2206/wmake/makefiles/general:150: /home/tomJ/OpenFOAM/OpenFOAM-v2206/platforms/linux64GccDPInt32Debug/bin/diluteVdfTransportFoam] Error 1
wmake multiphase
.

Finally, I did it for a 4th time and now I only get the error in:
Code:
wmake diluteVdfTransportFoam
g++ -std=c++11 -m64 -pthread -DOPENFOAM=2206 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wold-style-cast -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -Wno-attributes -Wno-unknown-pragmas -O0 -fdefault-inline -ggdb3 -DFULLDEBUG -DNoRepository -ftemplate-depth-100  -I/home/tomJ/OpenFOAM/OpenFOAM-v2206/src/OpenFOAM/lnInclude -I/home/tomJ/OpenFOAM/OpenFOAM-v2206/src/transportModels/compressible/lnInclude -I/home/tomJ/OpenFOAM/OpenFOAM-v2206/src/thermophysicalModels/basic/lnInclude -I/home/tomJ/OpenFOAM/OpenFOAM-v2206/src/transportModels/incompressible/lnInclude -I/home/tomJ/OpenFOAM/OpenFOAM-v2206/src/TurbulenceModels/turbulenceModels/lnInclude -I/home/tomJ/OpenFOAM/OpenFOAM-v2206/src/TurbulenceModels/compressible/lnInclude -I/home/tomJ/OpenFOAM/OpenFOAM-v2206/src/TurbulenceModels/phaseCompressible/lnInclude -I/home/tomJ/OpenFOAM/OpenFOAM-v2206/src/finiteVolume/lnInclude -I/home/tomJ/OpenFOAM/OpenFOAM-v2206/src/meshTools/lnInclude -I/home/tomJ/OpenFOAM/OpenFOAM-v2206/src/sampling/lnInclude -I../../../../src/mappedList -I../../../../src/mappedPtrList -I../../../../src/quadratureMethods/momentSets/lnInclude -I../../../../src/quadratureMethods/momentInversion/lnInclude -I../../../../src/quadratureMethods/quadratureNode/lnInclude -I../../../../src/quadratureMethods/moments -I../../../../src/quadratureMethods/fieldMomentInversion/lnInclude -I../../../../src/quadratureMethods/quadratureApproximations/lnInclude -I../../../../src/quadratureMethods/momentAdvection/lnInclude -I../../../../src/quadratureMethods/populationBalanceModels/lnInclude -I../phaseModel/lnInclude -I../interfacialModels/lnInclude -I../phaseCompressibleTurbulenceModels -I../../../utilities/phaseMeanVelocityForce/lnInclude -iquote. -IlnInclude -I/home/tomJ/OpenFOAM/OpenFOAM-v2206/src/OpenFOAM/lnInclude -I/home/tomJ/OpenFOAM/OpenFOAM-v2206/src/OSspecific/POSIX/lnInclude   -fPIC -Xlinker --add-needed -Xlinker --no-as-needed  /home/tomJ/OpenFOAM/OpenFOAM-v2206/build/linux64GccDPInt32Debug/modules/OpenQBMM/applications/solvers/velocityDistributionTransport/diluteVdfTransportFoam/diluteVdfTransportFoam.o -L/home/tomJ/OpenFOAM/OpenFOAM-v2206/platforms/linux64GccDPInt32Debug/lib \
    -lcompressibleTransportModels -lfluidThermophysicalModels -lspecie -lturbulenceModels -lcompressibleTurbulenceModels -lthermoTools -lincompressibleTransportModels -lfiniteVolume -lfvOptions -lmeshTools -lsampling -L/home/tomJ/OpenFOAM/OpenFOAM-v2206/platforms/linux64GccDPInt32Debug/lib -lquadratureNode -lmomentSets -lmomentInversion -lfieldMomentInversion -lquadratureApproximation -lmomentAdvection -lpopulationBalance -lpbePhaseModels -lpbeInterfacialModels -lpbeTurbulenceModels -lfvOptionPhaseMeanVelocityForce -lOpenFOAM -ldl  \
    -ggdb3 -DFULLDEBUG -lm -o /home/tomJ/OpenFOAM/OpenFOAM-v2206/platforms/linux64GccDPInt32Debug/bin/diluteVdfTransportFoam
/usr/bin/ld: /home/tomJ/OpenFOAM/OpenFOAM-v2206/build/linux64GccDPInt32Debug/modules/OpenQBMM/applications/solvers/velocityDistributionTransport/diluteVdfTransportFoam/diluteVdfTransportFoam.o: unsupported relocation type 0x70
/usr/bin/ld: /home/tomJ/OpenFOAM/OpenFOAM-v2206/build/linux64GccDPInt32Debug/modules/OpenQBMM/applications/solvers/velocityDistributionTransport/diluteVdfTransportFoam/diluteVdfTransportFoam.o: unrecognized relocation type 0x70 in section `.debug_info'
/usr/bin/ld: is this version of the linker - (GNU Binutils for Ubuntu) 2.34 - out of date ?
/usr/bin/ld: final link failed: bad value
collect2: error: ld returned 1 exit status
make: *** [/home/tomJ/OpenFOAM/OpenFOAM-v2206/wmake/makefiles/general:150: /home/tomJ/OpenFOAM/OpenFOAM-v2206/platforms/linux64GccDPInt32Debug/bin/diluteVdfTransportFoam] Error 1
wmake multiphase
Which I do not know how to fix.
I have ran 2 or 3 tutorials and OF seams to work. But is this normal? To need 4 passes to compile everything? Or did I do something wrong?
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Old   September 7, 2022, 09:28
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I don't think this is how to run in parallel. You need GCC and openmpi to be installed. I do the following to run the icoFoam example in parallel


First copy the file “decomposeParDict” from the case “/tutorials/multiphase/interFoam/laminar/damBreak/system” to the directory “system” located inside the “cavity” case to be able to decompose the domain to the required number of processors. Now go into the file “system/decomposeParDict” then modify the “numberOfSubdomains” to the number of processes you plan to run:
**************************

numberOfSubdomains 64;
method simple;
simpleCoeffs
{
n ( 4 4 4 );
delta 0.001;
}
*************************

% blockMesh ( To generate the mesh)
% decomposePar ( To divide the mesh points on the number processors )
% mpirun -np 4 icoFoam -parallel > log &


#################
Find information at https://www.openfoam.com/documentati...ns-in-parallel


Best
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Old   September 8, 2022, 04:20
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To build openfoam in parallel you just need to load the openmpi libaray on the system and then run "./Allwmake". best
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