OF2212 compilation error on cluster
 

Hello to all,

I'm trying to compile OpenFoam 2212 from source on a remote machine and I have a compilation error that I don't understand. I couldn't find an answer by copying the error message on the web.

Do you have any idea where it came from and how to fix it?

Thanks for your help :)

Edit : same procedure applied to OpenFOAM2106 does not generate any error.

Here is an extract from the log file "log.linux64IccDPInt32Opt"


Compiling enabled on 8 cores
gcc=/usr/bin/gcc
clang=
mpirun=/ccc/products/openmpi-4.1.4/intel--20.0.0/default/bin/mpirun
make=/usr/bin/make
cmake=/usr/bin/cmake
wmake=/ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/wmake/wmake
m4=/usr/bin/m4
flex=/usr/bin/flex

compiler=/ccc/products/icc-20.0.0/system/default/20.0.0/bin/intel64/icpc
icpc (ICC) 19.1.0.166 20191121

========================================
2023-01-10 09:51:16 +0100
Starting compile OpenFOAM-v2212 Allwmake
Icc system compiler []
linux64IccDPInt32Opt, with SYSTEMOPENMPI sys-openmpi
========================================

built wmake-bin (linux64Icc)
Skip ThirdParty (no directory)
========================================
Compile OpenFOAM libraries
========================================
ln: OpenFOAM/lnInclude
ln: OSspecific/POSIX/lnInclude
found <sys/inotify.h> -- enabling inotify for file monitoring.
wmake libo (POSIX)
icpc -std=c++14 -pthread -fp-trap=common -fp-model precise -DOPENFOAM=2212 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -Wno-unknown-pragmas -diag-disable 327,654,1125,1292,2289,2304,11062,11074,11076 -O3 -DNoRepository -DFOAM_USE_INOTIFY -iquote. -IlnInclude -I/ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/src/OpenFOAM/lnInclude -I/ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/src/OSspecific/POSIX/lnInclude -fPIC -c signals/sigSegv.C -o /ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/build/linux64IccDPInt32Opt/src/OSspecific/POSIX/signals/sigSegv.o
icpc -std=c++14 -pthread -fp-trap=common -fp-model precise -DOPENFOAM=2212 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -Wno-unknown-pragmas -diag-disable 327,654,1125,1292,2289,2304,11062,11074,11076 -O3 -DNoRepository -DFOAM_USE_INOTIFY -iquote. -IlnInclude -I/ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/src/OpenFOAM/lnInclude -I/ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/src/OSspecific/POSIX/lnInclude -fPIC -c signals/sigInt.C -o /ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/build/linux64IccDPInt32Opt/src/OSspecific/POSIX/signals/sigInt.o

[........................]


icpc -std=c++14 -pthread -fp-trap=common -fp-model precise -DOPENFOAM=2212 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -Wno-unknown-pragmas -diag-disable 327,654,1125,1292,2289,2304,11062,11074,11076 -O3 -DNoRepository -I/ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/build/linux64IccDPInt32Opt/src/OpenFOAM -DHAVE_LIBZ -iquote. -IlnInclude -I/ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/src/OpenFOAM/lnInclude -I/ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/src/OSspecific/POSIX/lnInclude -fPIC -c db/dictionary/dictionary.C -o /ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/build/linux64IccDPInt32Opt/src/OpenFOAM/db/dictionary/dictionary.o
icpc -std=c++14 -pthread -fp-trap=common -fp-model precise -DOPENFOAM=2212 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -Wno-unknown-pragmas -diag-disable 327,654,1125,1292,2289,2304,11062,11074,11076 -O3 -DNoRepository -I/ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/build/linux64IccDPInt32Opt/src/OpenFOAM -DHAVE_LIBZ -iquote. -IlnInclude -I/ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/src/OpenFOAM/lnInclude -I/ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/src/OSspecific/POSIX/lnInclude -fPIC -c db/dictionary/dictionaryIO.C -o /ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/build/linux64IccDPInt32Opt/src/OpenFOAM/db/dictionary/dictionaryIO.o
Internal error loop: assertion failed: find_seq_in_lookup_table: seq_number not found (shared/cfe/edgcpfe/il.c, line 4284)

compilation aborted for db/IOstreams/Pstreams/IPBstreams.C (code 4)
icpc -std=c++14 -pthread -fp-trap=common -fp-model precise -DOPENFOAM=2212 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -Wno-unknown-pragmas -diag-disable 327,654,1125,1292,2289,2304,11062,11074,11076 -O3 -DNoRepository -I/ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/build/linux64IccDPInt32Opt/src/OpenFOAM -DHAVE_LIBZ -iquote. -IlnInclude -I/ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/src/OpenFOAM/lnInclude -I/ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/src/OSspecific/POSIX/lnInclude -fPIC -c db/dictionary/dictionarySearch.C -o /ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/build/linux64IccDPInt32Opt/src/OpenFOAM/db/dictionary/dictionarySearch.o
make: *** [/ccc/work/cont003/gen10794/xavierth/COMPIL_OPENFOAM/OpenFOAM-v2212-32bits-INTEL/OpenFOAM-v2212/build/linux64IccDPInt32Opt/src/OpenFOAM/db/IOstreams/Pstreams/IPBstreams.o] Error 4
make: *** Waiting for unfinished jobs....