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[OpenFOAM.com] Cant find simpleFoam executable on aws cluster

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Old   June 18, 2024, 12:38
Default Cant find simpleFoam executable on aws cluster
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Tom
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I am going through the step by step guide on setting up an aws cluster and install of openFoam (here)

When I submit the motor bike tutorial run that's included, the blockmesh and snappyhexmesh run correctly, however the simplefoam command does not run and i get the error "mpirun was unable to find the specified executable file"..... "Executable: simpleFoam" in the log file.

My submit file:
Code:
#!/bin/bash
#SBATCH --job-name=foam
#SBATCH --ntasks=288
#SBATCH --output=%x_%j.out
#SBATCH --partition=compute

module load openmpi
source /fsx/OpenFOAM/OpenFOAM-v2312/etc/bashrc

surfaceFeatureExtract  > ./log/surfaceFeatureExtract.log 2>&1
blockMesh  > ./log/blockMesh.log 2>&1
decomposePar -decomposeParDict system/decomposeParDict.hierarchical  > ./log/decomposePar.log 2>&1
mpirun -np $SLURM_NTASKS snappyHexMesh -parallel -overwrite -decomposeParDict system/decomposeParDict.hierarchical   > ./log/snappyHexMesh.log 2>&1
mpirun -np $SLURM_NTASKS checkMesh -parallel -allGeometry -constant -allTopology -decomposeParDict system/decomposeParDict.hierarchical > ./log/checkMesh.log 2>&1
mpirun -np $SLURM_NTASKS redistributePar -parallel -overwrite -decomposeParDict system/decomposeParDict.ptscotch > ./log/decomposePar2.log 2>&1
mpirun -np $SLURM_NTASKS renumberMesh -parallel -overwrite -constant -decomposeParDict system/decomposeParDict.ptscotch > ./log/renumberMesh.log 2>&1
mpirun -np $SLURM_NTASKS patchSummary -parallel -decomposeParDict system/decomposeParDict.ptscotch > ./log/patchSummary.log 2>&1
ls -d processor* | xargs -i rm -rf ./{}/0
ls -d processor* | xargs -i cp -r 0.orig ./{}/0
mpirun -np $SLURM_NTASKS simpleFoam -parallel  -decomposeParDict system/decomposeParDict.ptscotch > ./log/simpleFoam.log 2>&1
Is there just a broken link somewhere? I noticed the tutorial is for OpenFOAM-v2012, whereas I've installed the latest version OpenFOAM-v2312, so not sure if this is part of the issue. Any help is appreciated.

Thanks!
Tom
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Old   June 20, 2024, 02:29
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I have run the foamInstallationTest and got the output below. It looks like icoFoam was not installed correctly. I've tried doing a search on how to correct this but have not found any examples that are applicable to my application. If there are any thoughts on this it would be much appreciated.

Code:
Shell:       bash
Host:        ip-172-31-29-242
OS:          Linux version 5.10.218-208.862.amzn2.x86_64

System check: PASS
==================
Can continue to OpenFOAM installation.

[ec2-user@ip-172-31-29-242 OpenFOAM]$ foamInstallationTest
Executing foamInstallationTest

Basic setup :
-------------------------------------------------------------------------------
OpenFOAM:            OpenFOAM-v2312
ThirdParty:          ThirdParty-v2312
Shell:               bash
Host:                ip-172-31-29-242
OS:                  Linux version 5.10.218-208.862.amzn2.x86_64
-------------------------------------------------------------------------------

Main OpenFOAM env variables :
-------------------------------------------------------------------------------
Environment           FileOrDirectory                          Valid      Crit
-------------------------------------------------------------------------------
$WM_PROJECT_USER_DIR  /home/ec2-user/OpenFOAM/ec2-user-v2312    no        no
$WM_THIRD_PARTY_DIR   /fsx/OpenFOAM/ThirdParty-v2312            yes       maybe
$WM_PROJECT_SITE      [env variable unset]                                no
-------------------------------------------------------------------------------

OpenFOAM env variables in PATH :
-------------------------------------------------------------------------------
Environment           FileOrDirectory                          Valid Path Crit
-------------------------------------------------------------------------------
$WM_PROJECT_DIR       /fsx/OpenFOAM/OpenFOAM-v2312              yes  yes  yes

$FOAM_APPBIN          ...12/platforms/linux64GccDPInt32Opt/bin  yes  yes  yes
$FOAM_SITE_APPBIN     ...12/platforms/linux64GccDPInt32Opt/bin  no        no
[ec2-user@ip-172-31-29-242 OpenFOAM]$
$WM_DIR               /fsx/OpenFOAM/OpenFOAM-v2312/wmake        yes  yes  often
-------------------------------------------------------------------------------

OpenFOAM env variables in LD_LIBRARY_PATH :
-------------------------------------------------------------------------------
Environment           FileOrDirectory                          Valid Path Crit
-------------------------------------------------------------------------------
$FOAM_LIBBIN          ...12/platforms/linux64GccDPInt32Opt/lib  yes  yes  yes
$FOAM_SITE_LIBBIN     ...12/platforms/linux64GccDPInt32Opt/lib  no        no
$FOAM_USER_LIBBIN     ...12/platforms/linux64GccDPInt32Opt/lib  no        no
$FOAM_EXT_LIBBIN      ...v2312/platforms/linux64GccDPInt32/lib  yes  yes  maybe
$MPI_ARCH_PATH        /opt/amazon/openmpi                       yes   no  yes
-------------------------------------------------------------------------------

Software Components
-------------------------------------------------------------------------------
Software     Version    Location
-------------------------------------------------------------------------------
flex         2.5.37     /usr/bin/flex
make         3.82       /usr/bin/make
wmake        2312       /fsx/OpenFOAM/OpenFOAM-v2312/wmake/wmake
gcc          7.3.1      /usr/bin/gcc
g++          7.3.1      /usr/bin/g++
-------------------------------------------------------------------------------
icoFoam   *** not installed ***
          CRITICAL ERROR


Summary
-------------------------------------------------------------------------------
Base configuration ok.
The foam installation contains 1 critical error(s).

Review the output for warning messages and consult
the installation guide for troubleshooting.

Done
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Old   June 24, 2024, 03:41
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Mark Olesen
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Examine the contents of the FOAM_APPBIN and the FOAM_LIBBIN directories. They really should contain something...
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Old   June 24, 2024, 22:05
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Tom
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Thanks for the response.

When searching for either directory (FOAM_APPBIN, FOAM_LIBBIN) in my OpenFoam-v2312 directory does not return anything. Is there a typical file path for these directories?

I am also not finding them in the .tgz files (which I downloaded from here: https://develop.openfoam.com/Develop...r/doc/Build.md)
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