|
Hi Bernhard,
thank for for g
Hi Bernhard,
thank for for giving me some assistance. Please excuse my late response since i am currently on vacation on Fuerteventura (just with external internet access). Bye the way, the weather is much more better than in good old germany. As soon as I´m back home I will make the installation as you suggested and give you feedback. Thank you in advance... Live long and prosper.. HJ |
Hi Bernhard,
back home again
Hi Bernhard,
back home again I ran Allwmake with file output. I went trough all the stuff. wmake says: "ld: library not found for -lOpenFOAM collect2: ld returned 1 exit status" prior to exiting - indicationg a linker problem (?). This error appears also in other link-runs, always with the problem not finding the OpenFOAM-library What can I do??? HJ |
Hi HJ!
Some questions:
I
Hi HJ!
Some questions: Is there a library libOpenFOAM.dylib there? Check with "ls $FOAM_LIBBIN" Is the variable DYLD_LIBRARY_PATH correctly set? (== is FOAM_LIBBIN included?) Are any applications compiled (check with "ls $FOAM_APPBIN")? Look in the compile.log for the first occurence of an error (propably that might be the cause) Bernhard |
Hi!
Apparently no applicati
Hi!
Apparently no applications get linked because the OpenFOAM-lib is missing (did not get linked). Could you try "cd $FOAM_SRC/OpenFOAM; wmake libso" (Or check the compile.log - there should be some kind of problem up there) Bernhard |
onyx-bridge 313% gdb ../../../
onyx-bridge 313% gdb ../../../wmake/rules/sgi*/wmkdep
GNU gdb 6.6 Copyright (C) 2006 Free Software Foundation, Inc. GDB is free software, covered by the GNU General Public License, and you are welcome to change it and/or distribute copies of it under certain conditions. Type "show copying" to see the conditions. There is absolutely no warranty for GDB. Type "show warranty" for details. This GDB was configured as "mips-sgi-irix6.5"... (gdb) r dynamicFvMesh.C Starting program: /disk4/usr/people/student3/OpenFOAM/OpenFOAM-1.4.1/wmake/rules/sgiN32Gcc/wmkdep dynamicFvMesh.C Making dependency list for source file dynamicFvMesh.C $(OBJECTS_DIR)/dynamicFvMesh.o: dynamicFvMesh.dep 1111dynamicFvMesh.dep: dynamicFvMesh.C 1111dynamicFvMesh.dep: dynamicFvMesh.H could not open file fvMesh.H for source file dynamicFvMesh.C could not open file autoPtr.H for source file dynamicFvMesh.C could not open file runTimeSelectionTables.H for source file dynamicFvMesh.C Program received signal SIGSEGV, Segmentation fault. fread () at /xlv42/6.5.23m/work/irix/lib/libc/libc_n32_M4/stdio/fread.c:37 37 /xlv42/6.5.23m/work/irix/lib/libc/libc_n32_M4/stdio/fread.c: No such file or directory. in /xlv42/6.5.23m/work/irix/lib/libc/libc_n32_M4/stdio/fread.c (gdb) bt #0 fread () at /xlv42/6.5.23m/work/irix/lib/libc/libc_n32_M4/stdio/fread.c:37 #1 0x10002b74 in yylex () #2 0x10003250 in main () (gdb) q The program is running. Exit anyway? (y or n) y onyx-bridge 314% uname -a IRIX64 onyx-bridge 6.5 01080747 IP35 onyx-bridge 315% ulimit -a time(seconds) unlimited file(blocks) unlimited data(kbytes) unlimited stack(kbytes) 65536 memory(kbytes) 29096416 coredump(blocks) unlimited nofiles(descriptors) 200 vmemory(kbytes) unlimited concurrency(threads) 1024 onyx-bridge 316% Hi Bernhard, Concerning the beginning of this thread, I have a question. I try to compile OpenFOAM on Irix6.5, yet I met core dump everytime when wmkdep is called. So, it is quite fatal that after compilation icoFoam failed with SegV. For instance, when I wmake libso dynamicFVMesh, after it is finished, I get a bad dynamicFVMesh.so and with a core file under src/dynamicFVMesh directory. Here is the information when I try to debug it. ----------------------------- onyx-bridge 313% gdb ../../../wmake/rules/sgi*/wmkdep GNU gdb 6.6 Copyright (C) 2006 Free Software Foundation, Inc. GDB is free software, covered by the GNU General Public License, and you are welcome to change it and/or distribute copies of it under certain conditions. Type "show copying" to see the conditions. There is absolutely no warranty for GDB. Type "show warranty" for details. This GDB was configured as "mips-sgi-irix6.5"... (gdb) r dynamicFvMesh.C Starting program: /disk4/usr/people/student3/OpenFOAM/OpenFOAM-1.4.1/wmake/rules/sgiN32Gcc/wmkdep dynamicFvMesh.C Making dependency list for source file dynamicFvMesh.C $(OBJECTS_DIR)/dynamicFvMesh.o: dynamicFvMesh.dep 1111dynamicFvMesh.dep: dynamicFvMesh.C 1111dynamicFvMesh.dep: dynamicFvMesh.H could not open file fvMesh.H for source file dynamicFvMesh.C could not open file autoPtr.H for source file dynamicFvMesh.C could not open file runTimeSelectionTables.H for source file dynamicFvMesh.C Program received signal SIGSEGV, Segmentation fault. fread () at /xlv42/6.5.23m/work/irix/lib/libc/libc_n32_M4/stdio/fread.c:37 37 /xlv42/6.5.23m/work/irix/lib/libc/libc_n32_M4/stdio/fread.c: No such file or directory. in /xlv42/6.5.23m/work/irix/lib/libc/libc_n32_M4/stdio/fread.c (gdb) bt #0 fread () at /xlv42/6.5.23m/work/irix/lib/libc/libc_n32_M4/stdio/fread.c:37 #1 0x10002b74 in yylex () #2 0x10003250 in main () (gdb) q The program is running. Exit anyway? (y or n) y onyx-bridge 314% uname -a IRIX64 onyx-bridge 6.5 01080747 IP35 onyx-bridge 315% ulimit -a time(seconds) unlimited file(blocks) unlimited data(kbytes) unlimited stack(kbytes) 65536 memory(kbytes) 29096416 coredump(blocks) unlimited nofiles(descriptors) 200 vmemory(kbytes) unlimited concurrency(threads) 1024 onyx-bridge 316% So, what does this line mean? #0 fread () at /xlv42/6.5.23m/work/irix/lib/libc/libc_n32_M4/stdio/fread.c:37 Please help, thanks! Daniel |
Hi Daniel!
Which posting ar
Hi Daniel!
Which posting are you refering to? (just the date would be helpful) The line means that it has some problem reading the file. My guess is because of an invalid filehandle. The number of possible file descriptors (200) in your ulimit-output is to small I'm afraid. Raise it to a larger value (1024 is standard on linux) and try again. (my guess is that the error occurs when trying to read the 201st file. Because this is beyond the ulimit the file handle is invalid and the read fails. But this is only a guess - I don't speak IRIX) Bernhard |
Hi Bernhard,
I checked your h
Hi Bernhard,
I checked your hint. wmake says: SOURCE=primitives/uint/uintIO.C ; g++ -Ddarwin -DDP -Wall -W -Wno-unused-parameter -Wold-style-cast -O3 -ffast-math -DNoRepository -ftemplate-depth-30 -DWM_PROJECT_VERSION='"'1.4.1'"' -I/Users/heinzjuergengeurtz/OpenFOAM/OpenFOAM-1.4.1/src/zlib-1.2.1 -IlnInclude -I. -I/Users/heinzjuergengeurtz/OpenFOAM/OpenFOAM-1.4.1/src/OpenFOAM/lnInclude -fPIC -c $SOURCE -o Make/darwinDPOpt/uintIO.o primitives/uint/uintIO.C: In function 'Foam::Istream& Foam::operator>>(Foam::Istream&, unsigned int&)': primitives/uint/uintIO.C:69: error: 'uint' was not declared in this scope make: *** [Make/darwinDPOpt/uintIO.o] Error 1 This is a first information. I'm investigation, what is te problem with uint and crosscheck in other posts. Greetings HJ |
Hi,
From Bernhard (same th
Hi,
From Bernhard (same thread) : Try to replace the offending line i = uint(t.labelToken()); with i = (unsigned int)(t.labelToken()); (you WILL get a warning about an old-style cast) Good luck |
Hello Pierre & Bernhard,
yes,
Hello Pierre & Bernhard,
yes, you are right. This is also what I found. I modified uintIO.C and launched wmake libso which ran. Now currently I started ./Allwmake to verify and (hopefully) finis the make. As soon as I have a result I will dive you a feedback. Greetings HJ |
Hello Pierre & Bernhard,
we
Hello Pierre & Bernhard,
well, after replacing the "uint" I started Allwmake again. SUCCESS I checked icoFoam and checked it with paraview3.2.1. Looks quiet good. I make some some tutorials, but from the current view I'm through. Now I have to patch paraview to directly open Foam-cases. But tat's another thing... Thank you everbody for your assistance... Greeting HJ |
Hi HJ!
You're welcome. But
Hi HJ!
You're welcome. But we could have saved ourselfs some iterations. So everbody repeat after me "The most important compilation error is the first one in the logfile. If we fix that most of the others will go away" (OK. Would sound better if it would rhyme) Bernhard |
Sorry for the last bad posting
Sorry for the last bad posting.
Hi Bernhard, thanks for your help. I meant the posting by James Turner on Wednesday, May 02, 2007 - 06:35 am Now I change the nofiles to 2500, (Actually I use "unlimit" and got the following. (Seems 2500 is my IRIX's upper limit of nofiles, is it enough?)) ------------------------------- onyx-bridge 17% ulimit -a time(seconds) unlimited file(blocks) unlimited data(kbytes) unlimited stack(kbytes) 524288 memory(kbytes) 29096416 coredump(blocks) unlimited nofiles(descriptors) 2500 vmemory(kbytes) unlimited concurrency(threads) 1024 onyx-bridge 18% ------------------------------- but no luck, here's what i got after a few ./Allwmake in src/Pstream/dummy -> a core file and i tried to gdb, ------------------------------- onyx-bridge 18% gdb GNU gdb 6.6 Copyright (C) 2006 Free Software Foundation, Inc. GDB is free software, covered by the GNU General Public License, and you are welcome to change it and/or distribute copies of it under certain conditions. Type "show copying" to see the conditions. There is absolutely no warranty for GDB. Type "show warranty" for details. This GDB was configured as "mips-sgi-irix6.5". (gdb) core core Core was generated by `wmkdep'. Program terminated with signal 11, Segmentation fault. warning: wrong size gregset struct in core file warning: wrong size gregset struct in core file #0 0x00000000 in ?? () (gdb) bt #0 0x00000000 in ?? () -------------------------------- And it seems obvious that the problem lies in wmkdep.... Regards, Daniel |
HI Bernhard,
Not confident
HI Bernhard,
Not confident on wmkdep on my IRIX system, so I tried to replace "wmkdep" with "cpp -M" under rules/general, while make a soft link under /rules/sgiN32Gcc and wcleanAll and recompile again. (Is it ok by doing so?) Now, no core any more came out in each directory during compilation, however, in the end, the execution of icoFoam died all the same with Segmentation fault or bus error etc. Please help, Thank you. Daniel |
Hi Daniel!
No idea. In Linu
Hi Daniel!
No idea. In Linux I would recommend doing an strace (don't know if Irix has something like that). gdb doesn't give you anything because there is no debug-information included. Try the following: switch your OF-Compiler-Options to debug. Remove all the .o files you find in wmake and remake it. The core-dump should be more helpful then Bernhard |
I have already switch my OF-Co
I have already switch my OF-Compiler-Options to debug in .OpenFOAM-1.4.1/cshrc.
------------------------------------- onyx-bridge 52% icoFoam Bad system call (core dumped) onyx-bridge 53% ls FoamX Make core createFields.H icoFoam.C icoFoam.dep onyx-bridge 54% gdb icoFoam GNU gdb 6.6 Copyright (C) 2006 Free Software Foundation, Inc. GDB is free software, covered by the GNU General Public License, and you are welcome to change it and/or distribute copies of it under certain conditions. Type "show copying" to see the conditions. There is absolutely no warranty for GDB. Type "show warranty" for details. This GDB was configured as "mips-sgi-irix6.5"... (gdb) r Starting program: /disk4/usr/people/student3/OpenFOAM/OpenFOAM-1.4.1/applications/bin/sgiN32GccDPD ebug/icoFoam Program terminated with signal SIGSEGV, Segmentation fault. The program no longer exists. You can't do that without a process to debug. (gdb) core core Reading symbols from /disk4/usr/people/student3/OpenFOAM/sgiN32/gcc-4.2.1/lib32/libtriSurface.so...do ne. Loaded symbols for /disk4/usr/people/student3/OpenFOAM/sgiN32/gcc-4.2.1/lib32/libtriSurface.so Reading symbols from /disk4/usr/people/student3/OpenFOAM/sgiN32/gcc-4.2.1/lib32/libmeshTools.so...don e. Loaded symbols for /disk4/usr/people/student3/OpenFOAM/sgiN32/gcc-4.2.1/lib32/libmeshTools.so Reading symbols from /disk4/usr/people/student3/OpenFOAM/sgiN32/gcc-4.2.1/lib32/libPstream.so...done. Loaded symbols for /disk4/usr/people/student3/OpenFOAM/sgiN32/gcc-4.2.1/lib32/libPstream.so Reading symbols from /disk4/usr/people/student3/OpenFOAM/sgiN32/gcc-4.2.1/lib32/liblagrangian.so...do ne. Loaded symbols for /disk4/usr/people/student3/OpenFOAM/sgiN32/gcc-4.2.1/lib32/liblagrangian.so Reading symbols from /disk4/usr/people/student3/OpenFOAM/sgiN32/gcc-4.2.1/lib32/libfiniteVolume.so... done. Loaded symbols for /disk4/usr/people/student3/OpenFOAM/sgiN32/gcc-4.2.1/lib32/libfiniteVolume.so Reading symbols from /disk4/usr/people/student3/OpenFOAM/sgiN32/gcc-4.2.1/lib32/libOpenFOAM.so...done . Loaded symbols for /disk4/usr/people/student3/OpenFOAM/sgiN32/gcc-4.2.1/lib32/libOpenFOAM.so Reading symbols from /usr/lib32/libfpe.so...done. Loaded symbols for /usr/lib32/libfpe.so Reading symbols from /disk4/usr/people/student3/OpenFOAM/sgiN32/gcc-4.2.1/lib32/libstdc++.so.6...done . Loaded symbols for /disk4/usr/people/student3/OpenFOAM/sgiN32/gcc-4.2.1/lib32/libstdc++.so.6 Reading symbols from /usr/lib32/libm.so...done. Loaded symbols for /usr/lib32/libm.so Reading symbols from /disk4/usr/people/student3/OpenFOAM/sgiN32/gcc-4.2.1/lib32/libgcc_s.so.1...done. Loaded symbols for /disk4/usr/people/student3/OpenFOAM/sgiN32/gcc-4.2.1/lib32/libgcc_s.so.1 Reading symbols from /usr/lib32/libc.so.1...done. Loaded symbols for /usr/lib32/libc.so.1 Reading symbols from /usr/lib32/libz.so...done. Loaded symbols for /usr/lib32/libz.so You can't do that without a process to debug. (gdb) bt You can't do that without a process to debug. (gdb) q onyx-bridge 55% ulimit -a time(seconds) unlimited file(blocks) unlimited data(kbytes) unlimited stack(kbytes) 524288 memory(kbytes) 29096416 coredump(blocks) unlimited nofiles(descriptors) 2500 vmemory(kbytes) unlimited concurrency(threads) 1024 onyx-bridge 56% ------------------------------------------ 1. Is nofiles(descriptors)=2500 enough? 2. what do "Reading symblols" and "Loaded symbols" mean? Do they mean that my *.so files are correctly generated? 3. How could I know whether *.so files is correctly "wmake libso"? How to test it? 4. How to use strace in such cases? (IRIX has strace utility) I really appreciate your help. http://www.cfd-online.com/OpenFOAM_D...part/happy.gif Daniel |
5. Do you think that I can rep
5. Do you think that I can replace "wmkdep" with "cpp -M"?
I noticed that makeWmake only resulted out two files in wmake/rules/sgiN32Gcc, wmkdep and dirToString. So to remake it is not hard for me, yet with only one warning. ----------------------------------- onyx-bridge 59% ./makeWmake gcc -mabi=n32 -mips4 -Wall -O1 -DFULLDEBUG -fPIC dirToString.c -o /disk4/usr/people/student3/OpenFOAM/OpenFOAM-1.4.1/wmake/rules/sgiN32Gcc/dirToSt ring flex wmkdep.l ; gcc -mabi=n32 -mips4 -Wall -O1 -DFULLDEBUG -fPIC lex.yy.c -o /disk4/usr/people/student3/OpenFOAM/OpenFOAM-1.4.1/wmake/rules/sgiN32Gcc/wmkdep lex.yy.c:1393: warning: 'yyunput' defined but not used onyx-bridge 60% flex -V flex version 2.5.4 ----------------------------------- Any ideas? Daniel |
@1: Yeah 2500 is plenty
@2:
@1: Yeah 2500 is plenty
@2: It's got to do with http://en.wikipedia.org/wiki/Dynamic...ynamic_linking Don't wory about it @3: Don'T understand the question @4: I let it run and look what the last system-calls before the segfault are @5: Don't know the difference. But I guess it is only there for performance reasons |
Dear OF Community,
I have b
Dear OF Community,
I have been greatly enjoying 1.4.1-dev on my linux workstations, but I still have not been able to successfully compile on my Mac. I recently upgraded the OS to 10.5.2, and still I have no success. Could someone offer any advice? In my compile log, this is the first error: superusers-macbook-pro-15:~/OpenFOAM/OpenFOAM-1.4.1-dev/src/OpenFOAM kjmaki$ wmake libso /Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:6: warning: overriding commands for target `.L.dep' /Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:6: warning: ignoring old commands for target `.L.dep' /Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:6: warning: overriding commands for target `.L.dep' /Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:6: warning: ignoring old commands for target `.L.dep' /Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:6: warning: overriding commands for target `.L.dep' /Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:6: warning: ignoring old commands for target `.L.dep' *** Assembler checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -p checking the name lister (/usr/bin/nm -p) interface... ./configure: line 23524: External.*some_variable: command not found rm: conftest.dSYM: is a directory BSD nm checking for fgrep... grep -F checking whether to enable smp locks... yes checking if .proc/endp is needed... rm: conftest.dSYM: is a directory no checking directive for setting text section... .text checking directive for exporting symbols... .globl checking for objdump... no checking if .note.GNU-stack is needed... no checking suffix for labels... : checking prefix for global symbol labels... rm: conftest.dSYM: is a directory rm: conftest.dSYM: is a directory rm: conftest.dSYM: is a directory rm: conftest.dSYM: is a directory none configure: error: Could not determine global symbol label prefix + make make: *** No targets specified and no makefile found. Stop. + make install make: *** No rule to make target `install'. Stop. + make distclean make: *** No rule to make target `distclean'. Stop. + cd /Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/src + '[' OPENMPI = LAM -a '!' -r /lib/libmpi.a -a '!' -r /lib/libmpi.so -a '!' -r /lib/libmpi.dylib ']' + '[' OPENMPI = MPICH -a '!' -r /lib/libmpich.a -a '!' -r /lib/libmpich.so -a '!' -r /lib/libmpich.dylib ']' + cd /Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/applications/utilities/miscellaneous + wmake exe foamFlex The second and all subsequent errors appear like this: /Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:6: warning: ignoring old commands for target `.L.dep' SOURCE=triSurface/interfaces/STL/readSTLASCII.L ; foamFlex++ -f $SOURCE ; mv lex.yy.cc Make/darwinDPOpt/readSTLASCII.C ; g++ -Ddarwin -DDP -Wall -W -Wno-unused-parameter -Wold-style-cast -O3 -ffast-math -DNoRepository -ftemplate-depth-30 -IlnInclude -I. -I/Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/src/OpenFOAM/lnInclude -fPIC -c Make/darwinDPOpt/readSTLASCII.C -o Make/darwinDPOpt/readSTLASCII.o SOURCE=triSurface/interfaces/GTS/writeGTS.C ; g++ -Ddarwin -DDP -Wall -W -Wno-unused-parameter -Wold-style-cast -O3 -ffast-math -DNoRepository -ftemplate-depth-30 -IlnInclude -I. -I/Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/src/OpenFOAM/lnInclude -fPIC -c $SOURCE -o Make/darwinDPOpt/writeGTS.o dyld: Symbol not found: __ZN4Foam8OPstream5writeEPKc Referenced from: /Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/lib/darwinDPOpt/dummy/libPstream.dylib Expected in: dynamic lookup /bin/sh: line 1: 46335 Trace/BPT trap foamFlex++ -f $SOURCE mv: rename lex.yy.cc to Make/darwinDPOpt/readSTLASCII.C: No such file or directory i686-apple-darwin9-g++-4.0.1: Make/darwinDPOpt/readSTLASCII.C: No such file or directory i686-apple-darwin9-g++-4.0.1: no input files make: *** [Make/darwinDPOpt/readSTLASCII.o] Error 1 make: *** Waiting for unfinished jobs.... + wmake libso edgeMesh /Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:6: warning: overriding commands for target `.L.dep' /Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:6: warning: ignoring old c Additional information that might be of use: superusers-macbook-pro-15:~/OpenFOAM/OpenFOAM-1.4.1-dev kjmaki$ gcc -v Using built-in specs. Target: i686-apple-darwin9 Configured with: /var/tmp/gcc/gcc-5465~16/src/configure --disable-checking -enable-werror --prefix=/usr --mandir=/share/man --enable-languages=c,objc,c++,obj-c++ --program-transform-name=/^[cg][^.-]*$/s/$/-4.0/ --with-gxx-include-dir=/include/c++/4.0.0 --with-slibdir=/usr/lib --build=i686-apple-darwin9 --with-arch=apple --with-tune=generic --host=i686-apple-darwin9 --target=i686-apple-darwin9 Thread model: posix gcc version 4.0.1 (Apple Inc. build 5465) superusers-macbook-pro-15:~/OpenFOAM/OpenFOAM-1.4.1-dev kjmaki$ flex -V flex 2.5.33 Thanks! Kevin |
Dear FOAMers,
I am waiting
Dear FOAMers,
I am waiting for someone to throw me the gem that I know is out there! I am still stuck trying to get over the flex++ or foamFlex++ issue on my mac laptop. I have followed the advice on the closely related thread titled (I dont know how to point to urls of specific threads, sorry): Yy_current_buffer undefined flexx2.5.33 vs flexx2.5.4 And whether I use foamFlex++ or flex++ makes no differnce, and I run Allwmake twice. Please help :-) Kevin |
Hi Kevin!
Looks like libPSt
Hi Kevin!
Looks like libPStream does not get linked and consequently all other links fail. Is the MACOSX_DEPLOYMENT_TARGET-variable set (although I'm not quite sure whether this is still required on 10.5 or whether it is just folklore that it is set on my machine: http://paulbeachsblog.blogspot.com/2007/12/i-have-read-in-number-of-places-that- i.html) If that does not help grep the .o-files in PStream/dummy/Make/darwinDPOpt Bernhard PS: One afterthought: In your previos post you start with "wmake libso OpenFOAM". You already made the Pstream-library? |
Dear Bernhard,
Thank you fo
Dear Bernhard,
Thank you for your philanthropic generosity with your knowledge in these matters! I do regret to share that after your assistance, I am still unsuccessful at compiling on leopard. 1. My MACOSX_DEPLOYMENT_TARGET was set to 10.4, when I change it to 10.5, there is no effect. 2. superusers-macbook-pro-15:~/OpenFOAM/OpenFOAM-1.4.1-dev kjmaki$ grep '.o' src/Pstream/dummy/Make/darwinDPOpt/* Binary file src/Pstream/dummy/Make/darwinDPOpt/IPread.o matches Binary file src/Pstream/dummy/Make/darwinDPOpt/OPwrite.o matches Binary file src/Pstream/dummy/Make/darwinDPOpt/Pstream.o matches src/Pstream/dummy/Make/darwinDPOpt/dependencies:dependencies up to date src/Pstream/dummy/Make/darwinDPOpt/files:# 1 "<command>" src/Pstream/dummy/Make/darwinDPOpt/localObjectFiles:Pstream.o\ src/Pstream/dummy/Make/darwinDPOpt/localObjectFiles:IPread.o\ src/Pstream/dummy/Make/darwinDPOpt/localObjectFileshttp://www.cfd-online.com/OpenFOAM_D...part/proud.gifPwrite.o src/Pstream/dummy/Make/darwinDPOpt/objectFiles:$(OBJECTS_DIR)/Pstream.o\ src/Pstream/dummy/Make/darwinDPOpt/objectFiles:$(OBJECTS_DIR)/IPread.o\ src/Pstream/dummy/Make/darwinDPOpt/objectFiles:$(OBJECTS_DIR)/OPwrite.o src/Pstream/dummy/Make/darwinDPOpt/options:# 1 "options" src/Pstream/dummy/Make/darwinDPOpt/options:# 1 "<command>" src/Pstream/dummy/Make/darwinDPOpt/options:# 1 "options" 3. `/Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/lib/darwinDPOpt/dummy/libPstream.dyli b' is up to date. 4. When I installed leopard, I chose the "case-sensitive' format for my harddisk. I have noticed that this has prevented installing several commercial softwares. Has anyone else had problems with this, and could it be related to my present issues? Thanks, and a happy foaming day to you all! Kevin |
Hi Kevin!
People who know m
Hi Kevin!
People who know me, will tell you, that there is no philantropic bone in my body. I only like to confuse people with cryptic remarks and then watch laughing as they stumble into the dark ;) 1. OK. As long it is set. What makes a difference is >10.3 (something with dynamic linking, can't remember stuff I solved two years ago) 2+3: I meant something like "grep __ZN4Foam8OPstream5writeEPKc *.o" (but that should turn out one file and it should be fine as the dylib got linked) There was something the matter with the trisurface-lib (and that is where your linking trouble starts), but I can't put my finger on it 4: That, with all respect, was not a good move. For the reasons you mentioned one should only create a disk-image (or a special partition) for the OF-stuff. I think it should be stressed on the Wiki-page Bernhard |
Hi Kevin!
I just checked th
Hi Kevin!
I just checked the two OF-installations on my iBoot. One has in $FOAM_SRC/triSurface/Make/options the lines EXE_INC = -I$(LIB_SRC)/zlib-1.2.1/lnInclude LIB_LIBS = -lOpenFOAM -lz the other doesn't Maybe the LIB_LIBS-line makes the difference Bernhard |
Hi Bernhard,
Thanks for the
Hi Bernhard,
Thanks for the additional information. I have tried changing the $FOAM_SRC/triSurface/Make/options file, but it has no effect. I have realized that I was not able to build openmpi properly, but this will not be a big issue since I dont plan on running anything that will require multi-threads on my laptop. Thus, I have set my $WM_MPLIB to be empty. foamFlex++ and libPstream.dylib seem to be built properly, but when I go to triSurface/interfaces/STL/ and execute foamFlex++ on the readSTLASCII.L, I get the following: kjmaki$ foamFlex++ readSTLASCII.L dyld: Symbol not found: __ZN4Foam8OPstream5writeEPKc Referenced from: /Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/lib/darwinDPOpt/dummy/libPstream.dylib Expected in: dynamic lookup Trace/BPT trap Any thoughts on what I should do now???? Thanks again....Kevin PS my harddisk is now case-insensitive, with the special foam partition. |
Dear Fellow-Foamers,
I am s
Dear Fellow-Foamers,
I am still working on my foamFlex++ pstream difficulties, and obviously I am "way out of my league here". Any suggestions will be gratefully appreciated. I run the nm command on the libPstream.dylib and I see that here are many undefined symbols in this library's table. When I look at the compile log for the $FOAM_SRC/Allwmake, there is another similar error with the combustion lib -> wmake libso combustion /Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:6: warning: overriding commands for target `.L.dep' /Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:6: warning: ignoring old commands for target `.L.dep' /Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:6: warning: overriding commands for target `.L.dep' /Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:6: warning: ignoring old commands for target `.L.dep' /Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:6: warning: overriding commands for target `.L.dep' /Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:6: warning: ignoring old commands for target `.L.dep' /Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:6: warning: overriding commands for target `.L.dep' /Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:6: warning: ignoring old commands for target `.L.dep' /Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:6: warning: overriding commands for target `.L.dep' /Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:6: warning: ignoring old commands for target `.L.dep' SOURCE=hhuCombustionThermo/hhuCombustionThermos.C ; g++ -Ddarwin -DDP -Wall -W -Wno-unused-parameter -Wold-style-cast -O3 -ffast-math -DNoRepository -ftemplate-depth-30 -I/Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/src/finiteVolume/lnInclude -I/Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/src/thermophysicalModels/basic/lnInc lude -I/Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/src/thermophysicalModels/specie/lnIn clude -IlnInclude -I. -I/Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/src/OpenFOAM/lnInclude -fPIC -c $SOURCE -o Make/darwinDPOpt/hhuCombustionThermos.o SOURCE=chemistryReaders/chemkinReader/chemkinLexer.L ; foamFlex++ -f $SOURCE ; mv lex.yy.cc Make/darwinDPOpt/chemkinLexer.C ; g++ -Ddarwin -DDP -Wall -W -Wno-unused-parameter -Wold-style-cast -O3 -ffast-math -DNoRepository -ftemplate-depth-30 -I/Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/src/finiteVolume/lnInclude -I/Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/src/thermophysicalModels/basic/lnInc lude -I/Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/src/thermophysicalModels/specie/lnIn clude -IlnInclude -I. -I/Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/src/OpenFOAM/lnInclude -fPIC -c Make/darwinDPOpt/chemkinLexer.C -o Make/darwinDPOpt/chemkinLexer.o dyld: Symbol not found: __ZN3MPI3Win14Set_errhandlerERKNS_10ErrhandlerE Referenced from: /Users/kjmaki/OpenFOAM/OpenFOAM-1.4.1-dev/lib/darwinDPOpt/dummy/libPstream.dylib Expected in: dynamic lookup /bin/sh: line 1: 3820 Trace/BPT trap foamFlex++ -f $SOURCE mv: rename lex.yy.cc to Make/darwinDPOpt/chemkinLexer.C: No such file or directory i686-apple-darwin9-g++-4.0.1: Make/darwinDPOpt/chemkinLexer.C: No such file or directory i686-apple-darwin9-g++-4.0.1: no input files make: *** [Make/darwinDPOpt/chemkinLexer.o] Error 1 make: *** Waiting for unfinished jobs.... Does this mean that my Pstream library is not built well? Can anyone explain how I could glean more information from the troublesome symbol names? Help please :-) |
I am stuck somewhere in the sa
I am stuck somewhere in the same swamp as you, Kevin. Any luck so far?
For sure, I will make a cookbook on how to do this, when/if I finally succeed... /Mads |
Hi Mads,
Well, I am in a di
Hi Mads,
Well, I am in a different swamp now, at least it is a better smelling one! If I remember correctly, I was able to resolve my problem by ensuring that foamFlex++ was used instead of flex++. Initially I was altering the file $WM_PROJECT_DIR/wmake/rules/General/flex++, but it was the $WM_PROJECT_DIR/wmake/rules/Darwin/flex++ that needed the change. BTW, I have flex++ version 2.5.33 I now wish that I had more carefully documented the issues that I had to overcome to compile 1.4.1-dev on my MacBook Pro, thanks in advance for your offer to do so! kevin |
Hi Kevin, thank you for your s
Hi Kevin, thank you for your swift answer.
Uhm...flex++? :-) I see the flex++ file in the directory you mention, but what change does it need - is it stated above, I can't seem to find it. /Mads |
Hi Mads,
Please excuse me f
Hi Mads,
Please excuse me for not giving enough detail. These are the steps I followed (those that I can remember) to build 1.4.1-dev on Leopard. By the way, I still have some errors with things like openmpi, foamx, but the part of the installation that I need is working well. 1. In the Darwin section of $WM_PROJECT_DIR/.OpenFOAM-1.4.1-dev/bashrc, I set export WM_MPLIB= This causes the dummy library to be made. 2. Look further up in this thread about changing the uint to unsigned integer. This may be corrected in the SVN version, but it worth verifying. 3. There is other info on the message board about dealing with the flex++ issue, and I suggest reading around a bit. I can describe what I did, but I can't really explain why it works and I am not confident that I am doing things right. My file wmake/rules/darwin/flex++ reads: .SUFFIXES: .L Ltoo = foamFlex++ -f $$SOURCE ; mv lex.yy.cc $*.C ; $(CC) $(c++FLAGS) -c $*.C -o $@ #Ltoo = flex++ -f $$SOURCE ; mv lex.yy.cc $*.C ; $(CC) $(c++FLAGS) -c $*.C -o $@ .L.dep: $(MAKE_DEP) ~ Happy FOAMing, Kevin |
Hey Kevin,
thanks a lot. Po
Hey Kevin,
thanks a lot. Point 1 and 3 was already "fixed" in the current SVN, point 2 have I fixed myself using the guidelines above. I still get errors, the first one being: [...CUT...] + wmake libso triSurface /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:6: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:6: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:6: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:6: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:6: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' SOURCE=triSurface/interfaces/OFF/readOFF.C ; g++ -Ddarwin -DDP -Wall -W -Wno-unused-parameter -Wold-style-cast -O3 -ffast-math -DNoRepository -ftemplate-depth-30 -IlnInclude -I. -I/Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/src/OpenFOAM/lnInclude -fPIC -c $SOURCE -o Make/darwinDPOpt/readOFF.o SOURCE=triSurface/interfaces/STL/readSTLASCII.L ; foamFlex++ -f $SOURCE ; mv lex.yy.cc Make/darwinDPOpt/readSTLASCII.C ; g++ -Ddarwin -DDP -Wall -W -Wno-unused-parameter -Wold-style-cast -O3 -ffast-math -DNoRepository -ftemplate-depth-30 -IlnInclude -I. -I/Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/src/OpenFOAM/lnInclude -fPIC -c Make/darwinDPOpt/readSTLASCII.C -o Make/darwinDPOpt/readSTLASCII.o dyld: Symbol not found: __ZN4Foam8OPstream5writeEPKc Referenced from: /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/lib/darwinDPOpt/dummy/libPstream.dylib Expected in: dynamic lookup /bin/sh: line 1: 97911 Trace/BPT trap foamFlex++ -f $SOURCE mv: rename lex.yy.cc to Make/darwinDPOpt/readSTLASCII.C: No such file or directory i686-apple-darwin9-g++-4.0.1: Make/darwinDPOpt/readSTLASCII.C: No such file or directory i686-apple-darwin9-g++-4.0.1: no input files make: *** [Make/darwinDPOpt/readSTLASCII.o] Error 1 make: *** Waiting for unfinished jobs.... [...CUT...] /Mads |
My apologies to whomever is fo
My apologies to whomever is following this thread in hopes of installing OpenFOAM on a Mac (and haven't succeeded)...I promised a cookbook but I can't do it, since I can't compile and install this beast.
Any help is still appreciated. Here is my error as it looks right now (down to the first error): + cd wmake + ./makeWmake /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' make: Nothing to be done for `all'. + cd src + ./Allwmake + cd /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/src/OpenFOAM + wmakeLnInclude . + wmake libso zlib-1.2.3 /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' `/Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/lib/darwinDPOpt/libz.dylib' is up to date. + '[' OPENMPI = OPENMPI -a '!' -r /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/src/openmpi-1.2.6/platforms/darwinDPOpt/ lib/libmpi.a -a '!' -r /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/src/openmpi-1.2.6/platforms/darwinDPOpt/ lib/libmpi.so -a '!' -r /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/src/openmpi-1.2.6/platforms/darwinDPOpt/ lib/libmpi.dylib ']' + '[' OPENMPI = LAM -a '!' -r /lib/libmpi.a -a '!' -r /lib/libmpi.so -a '!' -r /lib/libmpi.dylib ']' + '[' OPENMPI = MPICH -a '!' -r /lib/libmpich.a -a '!' -r /lib/libmpich.so -a '!' -r /lib/libmpich.dylib ']' + cd Pstream + ./Allwmake + wmake libso dummy /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' `/Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/lib/darwinDPOpt/dummy/libPstream.dylib' is up to date. + '[' OPENMPI = LAM -o OPENMPI = OPENMPI -o OPENMPI = MPI -o OPENMPI = MPICH -o OPENMPI = MPICH-GM -o OPENMPI = MPIGAMMA ']' + export WM_OPTIONS=darwinDPOptOPENMPI + WM_OPTIONS=darwinDPOptOPENMPI + wmake libso mpi /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' darwinDPOptOPENMPI/options:5: /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/mplibOPENMPI: No such file or directory make: *** No rule to make target `/Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/mplibOPENMPI'. Stop. /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/wmake: cannot make, file Make/darwinDPOptOPENMPI/objectFiles was not created successfully + wmake libso OpenFOAM /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' `/Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/lib/darwinDPOpt/libOpenFOAM.dylib' is up to date. + wmake libso lduSolvers /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' `/Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/lib/darwinDPOpt/liblduSolvers.dylib' is up to date. + wmake libso lagrangian/basic /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' `/Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/lib/darwinDPOpt/liblagrangian.dylib' is up to date. + wmake libso triSurface /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/flex++:7: warning: overriding commands for target `.L.dep' /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/General/flex++:7: warning: ignoring old commands for target `.L.dep' SOURCE=triSurface/interfaces/STL/readSTLASCII.L ; foamFlex++ -f $SOURCE ; mv lex.yy.cc Make/darwinDPOpt/readSTLASCII.C ; g++ -Ddarwin -DDP -Wall -W -Wno-unused-parameter -Wold-style-cast -O3 -ffast-math -DNoRepository -ftemplate-depth-30 -IlnInclude -I. -I/Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/src/OpenFOAM/lnInclude -fPIC -c Make/darwinDPOpt/readSTLASCII.C -o Make/darwinDPOpt/readSTLASCII.o SOURCE=triSurface/interfaces/OFF/readOFF.C ; g++ -Ddarwin -DDP -Wall -W -Wno-unused-parameter -Wold-style-cast -O3 -ffast-math -DNoRepository -ftemplate-depth-30 -IlnInclude -I. -I/Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/src/OpenFOAM/lnInclude -fPIC -c $SOURCE -o Make/darwinDPOpt/readOFF.o dyld: Symbol not found: __ZN4Foam8OPstream5writeEPKc Referenced from: /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/lib/darwinDPOpt/dummy/libPstream.dylib Expected in: dynamic lookup /bin/sh: line 1: 62130 Trace/BPT trap foamFlex++ -f $SOURCE mv: rename lex.yy.cc to Make/darwinDPOpt/readSTLASCII.C: No such file or directory i686-apple-darwin9-g++-4.0.1: Make/darwinDPOpt/readSTLASCII.C: No such file or directory i686-apple-darwin9-g++-4.0.1: no input files make: *** [Make/darwinDPOpt/readSTLASCII.o] Error 1 make: *** Waiting for unfinished jobs.... + wmake libso edgeMesh I fixed the 'uint' error but now I think something is wrong with foamFlex++ (?) /Mads |
Hi Mads!
One problem could
Hi Mads!
One problem could be, that the file /Users/mads/OpenFOAM/OpenFOAM-1.4.1-dev/wmake/rules/darwin/mplibOPENMPI is missing (and the Pstream/mpi-library therefore does'nt know how to compile itself). And this os the library that provides the missing symbol __ZN4Foam8OPstream5writeEPKc. The contents of this file on my machine would be PFLAGS = -DOMPI_SKIP_MPICXX PINC = -I/opt/local/include/openmpi PLIBS = -L/opt/local/lib/ -lmpi But that assumes that OpenMPI was installed via ports on the machine Bernhard |
Thanks Bernhard :-)
OpenMPI
Thanks Bernhard :-)
OpenMPI...let's not go there: $ sudo port install openmpi Password: ---> Building openmpi with target all Error: Target org.macports.build returned: shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.or g_release_ports_science_openmpi/work/build" && make all " returned error 2 Command output: ../../../../../../../ompi/include/mpi.h:1466: error: previous declaration of 'PMPI_File_write_ordered_end' was here /opt/local/include/mpio.h:387: error: conflicting types for 'PMPI_File_get_type_extent' ../../../../../../../ompi/include/mpi.h:1468: error: previous declaration of 'PMPI_File_get_type_extent' was here /opt/local/include/mpio.h:397: error: conflicting types for 'PMPI_File_set_atomicity' ../../../../../../../ompi/include/mpi.h:1469: error: previous declaration of 'PMPI_File_set_atomicity' was here /opt/local/include/mpio.h:398: error: conflicting types for 'PMPI_File_get_atomicity' ../../../../../../../ompi/include/mpi.h:1470: error: previous declaration of 'PMPI_File_get_atomicity' was here /opt/local/include/mpio.h:399: error: conflicting types for 'PMPI_File_sync' ../../../../../../../ompi/include/mpi.h:1471: error: previous declaration of 'PMPI_File_sync' was here /opt/local/include/mpio.h:404: error: conflicting types for 'PMPI_File_set_errhandler' ../../../../../../../ompi/include/mpi.h:1389: error: previous declaration of 'PMPI_File_set_errhandler' was here /opt/local/include/mpio.h:405: error: conflicting types for 'PMPI_File_get_errhandler' ../../../../../../../ompi/include/mpi.h:1390: error: previous declaration of 'PMPI_File_get_errhandler' was here /opt/local/include/mpio.h:419: error: conflicting types for 'PMPI_File_f2c' ../../../../../../../ompi/include/mpi.h:1385: error: previous declaration of 'PMPI_File_f2c' was here /opt/local/include/mpio.h:420: error: conflicting types for 'PMPI_File_c2f' ../../../../../../../ompi/include/mpi.h:1384: error: previous declaration of 'PMPI_File_c2f' was here /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org _release_ports_science_openmpi/work/openmpi-1.2.6/ompi/mca/io/romio/romio/adio/c ommon/io_romio_ad_aggregate.c: In function 'mca_io_romio_dist_ADIOI_Calc_others_req': /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org _release_ports_science_openmpi/work/openmpi-1.2.6/ompi/mca/io/romio/romio/adio/c ommon/io_romio_ad_aggregate.c:412: warning: passing argument 7 of 'PMPI_Irecv' from incompatible pointer type /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org _release_ports_science_openmpi/work/openmpi-1.2.6/ompi/mca/io/romio/romio/adio/c ommon/io_romio_ad_aggregate.c:415: warning: passing argument 7 of 'PMPI_Irecv' from incompatible pointer type /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org _release_ports_science_openmpi/work/openmpi-1.2.6/ompi/mca/io/romio/romio/adio/c ommon/io_romio_ad_aggregate.c:424: warning: passing argument 7 of 'PMPI_Isend' from incompatible pointer type /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org _release_ports_science_openmpi/work/openmpi-1.2.6/ompi/mca/io/romio/romio/adio/c ommon/io_romio_ad_aggregate.c:427: warning: passing argument 7 of 'PMPI_Isend' from incompatible pointer type /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org _release_ports_science_openmpi/work/openmpi-1.2.6/ompi/mca/io/romio/romio/adio/c ommon/io_romio_ad_aggregate.c:437: warning: passing argument 2 of 'PMPI_Waitall' from incompatible pointer type /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org _release_ports_science_openmpi/work/openmpi-1.2.6/ompi/mca/io/romio/romio/adio/c ommon/io_romio_ad_aggregate.c:438: warning: passing argument 2 of 'PMPI_Waitall' from incompatible pointer type make[5]: *** [io_romio_ad_aggregate.lo] Error 1 make[4]: *** [all-recursive] Error 1 make[3]: *** [all-recursive] Error 1 make[2]: *** [all-recursive] Error 1 make[1]: *** [all-recursive] Error 1 make: *** [all-recursive] Error 1 Error: Status 1 encountered during processing. |
Hi Mads!
You can always tr
Hi Mads!
You can always try the OpenMPI that comes with the OF-sources. (For me the ports-version worked, but that was installed some time ago - and never updated - and on a PPC, so your milage may vary) Bernhard |
Good morning,
anybody tried
Good morning,
anybody tried to compile 1.5 ? Looks to me that it will be a challenge ... Regards, Pierre-Olivier |
Hi Pierre!
I'm sure the fir
Hi Pierre!
I'm sure the first one to do so will open a new thread Bernhard |
Hi Bernhard,
thanks, but ho
Hi Bernhard,
thanks, but how do I use the MPI that comes with the distribution? /Mads |
Hi Pierre...
I have openfoa
Hi Pierre...
I have openfoam 1.4.1 running on my MacOSX but when it comes to running paraview i am having a problem. it gives me an error paraview command not found I have installed paraview 3.2.1 darwin...as an image disk.....even openfoam is in a disk image... regarding the patch when i execute the patch command given above it fails mayank-guptas-macbookhttp://www.cfd-online.com/OpenFOAM_D...part/proud.gifpenFOAM-1.4.1 mayankgupta$ patch -i OpenFOAM-1.4.1-MacOSX-mwild.patch -p0 patching file .bashrc patch: **** malformed patch at line 17: # Tell OpenMPI where to find it's install directory i dont understan this....can anyone help me figure this out and my paraview problems....also i am unable to edit the bashrc file as it is hidden and m system does not know the command gedit or gmake...how can i have openfoam running smoothly.. |
hi PO
paraview paraFoam.pvs
hi PO
paraview paraFoam.pvs after i got the error on running paraFoam i tracked the line 75 on my paraFoam which is pasted above, but i think it is correct and points the file to be opened by paraview. Paraview is in a disk image soft linked to the directory having openfoam disk image. can u please tell me the problem |
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