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[PyFoam] Prblems with pyFoamPVSnapshot-PATHS in OF-2.0.1 |
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September 11, 2013, 15:03 |
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#21 |
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Wouter van der Meer
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Dear gschaider,
Yesterday I tried things and tonight I continued. first test Code:
wouter@wouter-desktop:~/OpenFOAM/wouter-2.2.x/run/projects/testje$ paraview --state=testje.pvsm QVariantMap DBusMenuExporterDBus::getProperties(int, const QStringList&) const: Condition failed: action . . . QVariantMap DBusMenuExporterDBus::getProperties(int, const QStringList&) const: Condition failed: action Inconsistency detected by ld.so: dl-close.c: 765: _dl_close: Assertion `map->l_init_called' failed! Second test with OF221 debian binary and paraviewopenfoam debian binary Code:
wouter@wouter-desktop:~/OpenFOAM/wouter-2.2.1/run/projects/testje$ pyFoamPVSnapshot.py --state=testje.pvsm --time=5 . Traceback (most recent call last): File "/usr/local/bin/pyFoamPVSnapshot.py", line 3, in <module> from PyFoam.Applications.PVSnapshot import PVSnapshot File "/usr/local/lib/python2.7/dist-packages/PyFoam/Applications/PVSnapshot.py", line 13, in <module> from PyFoam.Paraview.ServermanagerWrapper import ServermanagerWrapper as SM File "/usr/local/lib/python2.7/dist-packages/PyFoam/Paraview/__init__.py", line 15, in <module> from paraview import servermanager File "/opt/paraviewopenfoam3120/lib/paraview-3.12/site-packages/paraview/servermanager.py", line 43, in <module> import paraview, re, os, os.path, new, sys, vtk File "/opt/paraviewopenfoam3120/lib/paraview-3.12/site-packages/paraview/vtk/__init__.py", line 1, in <module> from vtkCommonPython import * ImportError: No module named vtkCommonPython Back to OF22x from paraView see picture (it works) Code:
wouter@wouter-desktop:~/OpenFOAM/wouter-2.2.x/run/projects/testje$ pvpython Python 2.7.4 (default, Jul 5 2013, 08:24:51) [GCC 4.7.3] on linux2 Type "help", "copyright", "credits" or "license" for more information. >>> from paraview.simple import * paraview version 3.12.0, Date: 2011-07-26 >>> servermanager.LoadState("./testje.pvsm") >>> SetActiveView(GetRenderView()) >>> Render() <paraview.servermanager.RenderView object at 0x7fae9f56dfd0> The next core dump I missed the cause of and I cannot reproduce it, but maybe it helps Code:
XIO: fatal IO error 0 (Success) on X server ":0" after 85 requests (85 known processed) with 6 events remaining. *** Error in `/home/wouter/OpenFOAM/ThirdParty-2.2.x/platforms/linux64Gcc/paraview-3.12.0/lib/paraview-3.12/pvpython': double free or corruption (!prev): 0x0000000002d92d10 *** ======= Backtrace: ========= /lib/x86_64-linux-gnu/libc.so.6(+0x80a46)[0x7fae9d5daa46] /home/wouter/OpenFOAM/ThirdParty-2.2.x/platforms/linux64Gcc/paraview-3.12.0/lib/paraview-3.12/libvtkPVServerImplementation.so(_ZN18vtkSIProxyPropertyD1Ev+0x78)[0x7fae9cb86c28] /home/wouter/OpenFOAM/ThirdParty-2.2.x/platforms/linux64Gcc/paraview-3.12.0/lib/paraview-3.12/libvtkPVServerImplementation.so(_ZN18vtkSIProxyPropertyD0Ev+0x9)[0x7fae9cb86cc9] /home/wouter/OpenFOAM/ThirdParty-2.2.x/platforms/linux64Gcc/paraview-3.12.0/lib/paraview-3.12/libvtkPVServerImplementation.so(_ZNSt8_Rb_treeISsSt4pairIKSs15vtkSmartPointerI13vtkSIPropertyEESt10_Select1stIS5_ESt4lessISsESaIS5_EE8_M_eraseEPSt13_Rb_tree_nodeIS5_E+0x36c)[0x7fae9cb7a48c] /home/wouter/OpenFOAM/ThirdParty-2.2.x/platforms/linux64Gcc/paraview-3.12.0/lib/paraview-3.12/libvtkPVServerImplementation.so(_ZN10vtkSIProxyD1Ev+0x3f)[0x7fae9cb778bf] /home/wouter/OpenFOAM/ThirdParty-2.2.x/platforms/linux64Gcc/paraview-3.12.0/lib/paraview-3.12/libvtkPVServerImplementation.so(_ZN16vtkSISourceProxyD0Ev+0x9)[0x7fae9cb8cff9] /home/wouter/OpenFOAM/ThirdParty-2.2.x/platforms/linux64Gcc/paraview-3.12.0/lib/paraview-3.12/libvtkPVServerImplementation.so(_ZN16vtkPVSessionCoreD1Ev+0x1be)[0x7fae9cb6609e] /home/wouter/OpenFOAM/ThirdParty-2.2.x/platforms/linux64Gcc/paraview-3.12.0/lib/paraview-3.12/libvtkPVServerImplementation.so(_ZN16vtkPVSessionCoreD0Ev+0x9)[0x7fae9cb66159] /home/wouter/OpenFOAM/ThirdParty-2.2.x/platforms/linux64Gcc/paraview-3.12.0/lib/paraview-3.12/libvtkPVServerImplementation.so(_ZN16vtkPVSessionBaseD1Ev+0x3f)[0x7fae9cb61d4f] /home/wouter/OpenFOAM/ThirdParty-2.2.x/platforms/linux64Gcc/paraview-3.12.0/lib/paraview-3.12/libvtkPVServerManager.so(_ZN12vtkSMSessionD0Ev+0x9)[0x7fae9efdaa29] /home/wouter/OpenFOAM/ThirdParty-2.2.x/platforms/linux64Gcc/paraview-3.12.0/lib/paraview-3.12/libvtkPVClientServerCore.so(_ZNSt8_Rb_treeIxSt4pairIKx15vtkSmartPointerI10vtkSessionEESt10_Select1stIS5_ESt4lessIxESaIS5_EE8_M_eraseEPSt13_Rb_tree_nodeIS5_E+0x207)[0x7fae9ec41c17] /home/wouter/OpenFOAM/ThirdParty-2.2.x/platforms/linux64Gcc/paraview-3.12.0/lib/paraview-3.12/libvtkPVClientServerCore.so(_ZN16vtkProcessModuleD2Ev+0x80)[0x7fae9ec411b0] /home/wouter/OpenFOAM/ThirdParty-2.2.x/platforms/linux64Gcc/paraview-3.12.0/lib/paraview-3.12/libvtkPVClientServerCore.so(_ZN16vtkProcessModuleD0Ev+0x9)[0x7fae9ec41219] /lib/x86_64-linux-gnu/libc.so.6(__cxa_finalize+0x9a)[0x7fae9d59652a] /home/wouter/OpenFOAM/ThirdParty-2.2.x/platforms/linux64Gcc/paraview-3.12.0/lib/paraview-3.12/libvtkPVClientServerCore.so(+0x925f3)[0x7fae9ebca5f3] ======= Memory map: ======== 00400000-00402000 r-xp 00000000 08:06 10098096 /home/wouter/OpenFOAM/ThirdParty-2.2.x/platforms/linux64Gcc/paraview-3.12.0/lib/paraview-3.12/pvpython 00602000-00603000 r--p 00002000 08:06 10098096 /home/wouter/OpenFOAM/ThirdParty-2.2.x/platforms/linux64Gcc/paraview-3.12.0/lib/paraview-3.12/pvpython 00603000-00604000 rw-p 00003000 08:06 10098096 /home/wouter/OpenFOAM/ThirdParty-2.2.x/platforms/linux64Gcc/paraview-3.12.0/lib/paraview-3.12/pvpython 014a4000-03826000 rw-p 00000000 00:00 0 [heap] 7fae77f8e000-7fae77fae000 rw-s 12b42c000 00:05 11642 /dev/dri/card0 7fae77fae000-7fae789ae000 rwxp 00000000 00:00 0 7fae789ae000-7fae78a2e000 rw-s 1156ea000 00:05 11642 /dev/dri/card0 7fae78a2e000-7fae78eb4000 rw-p 00000000 00:00 0 7fae78eb4000-7fae78f34000 rw-s 115165000 00:05 11642 /dev/dri/card0 7fae78f34000-7fae78f66000 r-xp 00000000 08:06 2368350 /usr/lib/x86_64-linux-gnu/libtxc_dxtn_s2tc.so.0.0.0 7fae78f66000-7fae79165000 ---p 00032000 08:06 2368350 /usr/lib/x86_64-linux-gnu/libtxc_dxtn_s2tc.so.0.0.0 7fae79165000-7fae79166000 r--p 00031000 08:06 2368350 /usr/lib/x86_64-linux-gnu/libtxc_dxtn_s2tc.so.0.0.0 7fae79166000-7fae79167000 rw-p 00032000 08:06 2368350 /usr/lib/x86_64-linux-gnu/libtxc_dxtn_s2tc.so.0.0.0 7fae79167000-7fae7a581000 r-xp 00000000 08:06 2367484 /usr/lib/x86_64-linux-gnu/libLLVM-3.2.so.1 7fae7a581000-7fae7a780000 ---p 0141a000 08:06 2367484 /usr/lib/x86_64-linux-gnu/libLLVM-3.2.so.1 7fae7a780000-7fae7a87b000 r--p 01419000 08:06 2367484 /usr/lib/x86_64-linux-gnu/libLLVM-3.2.so.1 7fae7a87b000-7fae7a881000 rw-p 01514000 08:06 2367484 /usr/lib/x86_64-linux-gnu/libLLVM-3.2.so.1 7fae7a881000-7fae7a88f000 rw-p 00000000 00:00 0 7fae7a88f000-7fae7a894000 r-xp 00000000 08:06 2367760 /usr/lib/x86_64-linux-gnu/libdrm_nouveau.so.2.0.0 7fae7a894000-7fae7aa93000 ---p 00005000 08:06 2367760 /usr/lib/x86_64-linux-gnu/libdrm_nouveau.so.2.0.0 7fae7aa93000-7fae7aa94000 r--p 00004000 08:06 2367760 /usr/lib/x86_64-linux-gnu/libdrm_nouveau.so.2.0.0 7fae7aa94000-7fae7aa95000 rw-p 00005000 08:06 2367760 /usr/lib/x86_64-linux-gnu/libdrm_nouveau.so.2.0.0 7fae7aa95000-7fae7ac99000 r-xp 00000000 08:06 2363811 /usr/lib/x86_64-linux-gnu/libgallium.so.0.0.0 7fae7ac99000-7fae7ae99000 ---p 00204000 08:06 2363811 /usr/lib/x86_64-linux-gnu/libgallium.so.0.0.0 7fae7ae99000-7fae7aea8000 r--p 00204000 08:06 2363811 /usr/lib/x86_64-linux-gnu/libgallium.so.0.0.0 7fae7aea8000-7fae7aeac000 rw-p 00213000 08:06 2363811 /usr/lib/x86_64-linux-gnu/libgallium.so.0.0.0 7fae7aeac000-7fae7b074000 rw-p 00000000 00:00 0 7fae7b074000-7fae7b412000 r-xp 00000000 08:06 2363812 /usr/lib/x86_64-linux-gnu/libdricore9.1.4.so.1.0.0 7fae7b412000-7fae7b612000 ---p 0039e000 08:06 2363812 /usr/lib/x86_64-linux-gnu/libdricore9.1.4.so.1.0.0 7fae7b612000-7fae7b623000 r--p 0039e000 08:06 2363812 /usr/lib/x86_64-linux-gnu/libdricore9.1.4.so.1.0.0 7fae7b623000-7fae7b62d000 rw-p 003af000 08:06 2363812 /usr/lib/x86_64-linux-gnu/libdricore9.1.4.so.1.0.0 7fae7b62d000-7fae7b644000 rw-p 00000000 00:00 0 7fae7b644000-7fae7b787000 r-xp 00000000 08:06 2622187 /usr/lib/x86_64-linux-gnu/dri/nouveau_dri.so 7fae7b787000-7fae7b986000 ---p 00143000 08:06 2622187 /usr/lib/x86_64-linux-gnu/dri/nouveau_dri.so 7fae7b986000-7fae7b989000 r--p 00142000 08:06 2622187 /usr/lib/x86_64-linux-gnu/dri/nouveau_dri.so 7fae7b989000-7fae7b98c000 rw-p 00145000 08:06 2622187 /usr/lib/x86_64-linux-gnu/dri/nouveau_dri.so 7fae7b98c000-7fae7b98e000 rw-p 00000000 00:00 0 7fae7b98e000-7fae7b9bd000 r-xp 00000000 08:06 11673993 /home/wouter/OpenFOAM/OpenFOAM-2.2.x/platforms/linux64GccDPDebug/lib/liblagrangian.so 7fae7b9bd000-7fae7bbbc000 ---p 0002f000 08:06 11673993 /home/wouter/OpenFOAM/OpenFOAM-2.2.x/platforms/linux64GccDPDebug/lib/liblagrangian.so 7fae7bbbc000-7fae7bbbe000 r--p 0002e000 08:06 11673993 /home/wouter/OpenFOAM/OpenFOAM-2.2.x/platforms/linux64GccDPDebug/lib/liblagrangian.so 7fae7bbbe000-7fae7bbbf000 rw-p 00030000 08:06 11673993 /home/wouter/OpenFOAM/OpenFOAM-2.2.x/platforms/linux64GccDPDebug/lib/liblagrangian.so 7fae7bbbf000-7fae7bbc0000 rw-p 00000000 00:00 0 7fae7bbc0000-7fae7bcdb000 r-xp 00000000 08:06 11673995 /home/wouter/OpenFOAM/OpenFOAM-2.2.x/platforms/linux64GccDPDebug/lib/libgenericPatchFields.so 7fae7bcdb000-7fae7bedb000 ---p 0011b000 08:06 11673995 /home/wouter/OpenFOAM/OpenFOAM-2.2.x/platforms/linux64GccDPDebug/lib/libgenericPatchFields.so 7fae7bedb000-7fae7bedf000 r--p 0011b000 08:06 11673995 /home/wouter/OpenFOAM/OpenFOAM-2.2.x/platforms/linux64GccDPDebug/lib/libgenericPatchFields.so 7fae7bedf000-7fae7bee4000 rw-p 0011f000 08:06 11673995 /home/wouter/OpenFOAM/OpenFOAM-2.2.x/platforms/linux64GccDPDebug/lib/libgenericPatchFields.so 7fae7bee4000-7fae7c098000 r-xp 00000000 08:06 11672144 /home/wouter/OpenFOAM/OpenFOAM-2.2.x/platforms/linux64GccDPDebug/lib/libvtkPV3Foam.so 7fae7c098000-7fae7c297000 ---p 001b4000 08:06 11672144 /home/wouter/OpenFOAM/OpenFOAM-2.2.x/platforms/linux64GccDPDebug/lib/libvtkPV3Foam.so 7fae7c297000-7fae7c29b000 r--p 001b3000 08:06 11672144 /home/wouter/OpenFOAM/OpenFOAM-2.2.x/platforms/linux64GccDPDebug/lib/libvtkPV3Foam.so 7fae7c29b000-7fae7c2a3000 rw-p 001b7000 08:06 11672144 /home/wouter/OpenFOAM/OpenFOAM-2.2.x/platforms/linux64GccDPDebug/lib/libvtkPV3Foam.so 7fae7c2a3000-7fae7c2ca000 r-xp 00000000 08:06 21239773 /home/wouter/OpenFOAM/OpenFOAM-2.2.x/platforms/linux64GccDPDebug/lib/paraview-3.12/libPV3FoamReader_SM.so 7fae7c2ca000-7fae7c4ca000 ---p 00027000 08:06 21239773 /home/wouter/OpenFOAM/OpenFOAM-2.2.x/platforms/linux64GccDPDebug/lib/paraview-3.12/libPV3FoamReader_SM.so 7fae7c4ca000-7fae7c4cb000 r--p 00027000 08:06 21239773 /home/wouter/OpenFOAM/OpenFOAM-2.2.x/platforms/linux64GccDPDebug/lib/paraview-3.12/libPV3FoamReader_SM.so 7fae7c4cb000-7fae7c4cc000 rw-p 00028000 08:06 21239773 /home/wouter/OpenFOAM/OpenFOAM-2.2.x/platforms/linux64GccDPDebug/lib/paraview-3.12/libPV3FoamReader_SM.so 7fae7c4cc000-7fae7c63e000 r-xp 00000000 08:06 9310148 /home/wouter/OpenFOAM/ThirdParty-2.2.x/platforms/linux64Gcc/openmpi-1.6.3/lib64/libmpi.so.1.0.6 7fae7c63e000-7fae7c83e000 ---p 00172000 08:06 9310148 /home/wouter/OpenFOAM/ThirdParty-2.2.x/platforms/linux64Gcc/openmpi-1.6.3/lib64/libmpi.so.1.0.6 7fae7c83e000-7fae7c843000 r--p 00172000 08:06 9310148 /home/wouter/OpenFOAM/ThirdParty-2.2.x/platforms/linux64Gcc/openmpi-1.6.3/lib64/libmpi.so.1.0.6Aborted (core dumped) Code:
wouter@wouter-desktop:~/OpenFOAM/wouter-2.2.x/run/projects/testje$ pyFoamPVSnapshot.py --state=testje.pvsm --time=1 . Warning in /usr/local/bin/pyFoamPVSnapshot.py : This utilitiy currently does not work with OF>=1.6 because the API in Paraview>=3.6 has changed. But we'll try ERROR: In /home/wouter/OpenFOAM/ThirdParty-2.2.x/ParaView-3.12.0/ParaViewCore/ServerImplementation/vtkPVSessionCore.cxx, line 324 vtkPVSessionCore (0x1944f60): Attempt to assign existing ID 1. while processing Message 0 = Assign Argument 0 = id_value {1} Argument 1 = vtk_object_pointer {vtkPVSessionCoreInterpreterHelper (0x38cf130)} ERROR: In /home/wouter/OpenFOAM/ThirdParty-2.2.x/ParaView-3.12.0/ParaViewCore/ServerImplementation/vtkPVSessionCore.cxx, line 325 vtkPVSessionCore (0x1944f60): Aborting execution for debugging purposes. Aborted (core dumped) Is there an easy way to use the system paraview3.98-python with openfoam 2.2.x? My attempt to build paraview3.98 and use it in openfoam failed because of missing headerfiles or headerfiles in the wrong places. any help is appreciated. best regards wouter |
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September 11, 2013, 19:08 |
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#22 | ||||
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Bernhard Gschaider
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If you still want to find the problem in pyFoam then the next thing would be to sprinkle the code with print-statements to see which call breaks everything (as the PV-libraries cause a core-dump there is no stack-trace). One candidate would be before and after Code:
sm.LoadState(newState)
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September 12, 2013, 08:19 |
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#23 |
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Wouter van der Meer
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Hello gschaider,
Thanks again for your commitment to pyFoam. I will try to follow the program and see where the interface has problems. It will take a while because my python knowledge is minimal. Best regards wouter |
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September 12, 2013, 11:57 |
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#24 | |
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Code:
print "I'm before ReadState" Sorry to offload debugging to you but it'd take me to long to reproduce the environment you have
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September 12, 2013, 17:58 |
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#25 |
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Wouter van der Meer
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Hello gschaider,
As I wrote, my knoledge of Python is minimal. Can you tell me where I can find the module PVSnapshot.py that is called, or do I have to "compile" with setup.py best regards wouter edit: I found it in usr/local/lib/python2.7/dist-packages/PyFoam/Applications. I also found that it goes wrong at calling SM(PV3FoamReader) |
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September 12, 2013, 18:44 |
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#26 | |
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Bernhard Gschaider
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Quote:
ServermanagerWrapper.py.gz
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September 12, 2013, 18:58 |
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#27 |
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Wouter van der Meer
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Hello gschaider,
what do I do with this file? I cannot find this file on my system and I do know to little of python to know where to put this file. Regards Wouter Edit: found it (typo in find). It is the same as you sent me (diff gave only header difference) so I go on with print and report back, but not tonight anymore. |
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September 13, 2013, 12:32 |
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#28 |
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Wouter van der Meer
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Hello gschaider,
succes. Code:
print "in __init__ ServermanagerWrapper.py" #added by wouter try: #removed by wouter self.con=self.module().Connect() self.con=None #added by wouter except RuntimeError: # 3.98 doesn't seem to need this naymore self.con=None Thank you for the patience Code:
wouter@wouter-desktop:~/OpenFOAM/wouter-2.2.x/run/projects/testje$ pyFoamPVSnapshot.py --state=testje.pvsm --time=2 . >log.PVSS PyFoam WARNING on line 68 of file /usr/local/lib/python2.7/dist-packages/PyFoam/Paraview/ServermanagerWrapper.py : Could not find libPV3FoamReader.so in ['/home/wouter/OpenFOAM/OpenFOAM-2.2.x/platforms/linux64GccDPDebug/lib', '/home/wouter/OpenFOAM/OpenFOAM-2.2.x/platforms/linux64GccDPDebug/lib/paraview-3.12'] Inconsistency detected by ld.so: dl-close.c: 765: _dl_close: Assertion `map->l_init_called' failed! edit2: in ServermanagerWrapper.py I replaced libPV3FoamReader.so into libvtkPV3Reader.so and the error message disappeared except for the Inconsistency. Still I get the pictures I want. I get the last error or warning also if I use paraview. Best regards wouter Last edited by wouter; September 14, 2013 at 19:43. |
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September 16, 2013, 16:18 |
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#29 | ||
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Bernhard Gschaider
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September 16, 2013, 18:07 |
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#30 |
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Wouter van der Meer
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Hello gschaider,
The 'fix' was still in place. Because of the fix the program worked but there was still an error. I looked for it and found that the library called was not available and I replaced it with one that was available in PV3FoamReader directory. The last error has something to do with my Thirdparty paraview, because if I only use paraview this error occures, not with paraFoam and not with /usr/bin/paraview. I tried to rebuild it but the error remained. Best Regards Wouter |
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September 17, 2013, 15:17 |
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#31 | |
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