| clemd |
March 29, 2017 04:28 |
[FATAL ERROR] patchSummary : size *** is not equal to the given value of ***
Hi everyone,
I am trying to run a parallel case with snappyHexMesh and simpleFoam relying on the motorBike tutorial, and I am facing some difficulties. In the system folder, I adapted the blockMeshDict to edit my limit box, the snappyHexMeshDict to refine as I wish and the controlDict. I also adapted the boundary conditions in the 0.org according to the constant/polymesh/boundary file.I have my .stl file in the constant/triSurface/ directory so I follow the steps I found in the Allrun script as below:
Code:
surfaceFeatureExtract
blockMesh
decomposePar
mpirun -np 4 snappyHexMesh -parallel -overwrite
ls -d processor* | xargs -I {} rm -rf ./{}/0
ls -d processor* | xargs -I {} cp -r 0.org ./{}/0
Up to this step, everything seems ok, but when I run
Code:
mpirun -np 4 patchSummary -parallel
I run into a series of errors like this one :
Code:
M FATAL IO ERROR:
[1] size 1651 is not equal to the given value of 853
[1]
[1] file: ***[CASE DIRECTORY]***/processor1/0/thickness.boundaryField.naca_PART_1_FACE from line 56 to line 57.
[1]
[1] From function Field<Type>::Field(const word& keyword, const dictionary&, const label)
[1] in file /mnt/home/SW/CFDSupportFOAM4.0/OpenFOAM-3.0.x/src/OpenFOAM/lnInclude/Field.C at line 283.
[1]
FOAM parallel run exiting
and I have the following log :
Code:
--------------------------------------------------------------------------
[[13386,1],2]: A high-performance Open MPI point-to-point messaging module
was unable to find any relevant network interfaces:
Module: OpenFabrics (openib)
Host: master
Another transport will be used instead, although this may result in
lower performance.
--------------------------------------------------------------------------
/*---------------------------------------------------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: 3.0.x |
| \\ / A nd | Web: www.OpenFOAM.org |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
Build : 3.0.x-4b5e129783d9
Exec : patchSummary -parallel
Date : Mar 29 2017
Time : 10:11:42
Host : "master"
PID : 28391
Case : ***[CASE DIRECTORY]***
nProcs : 4
Slaves :
3
(
"master.28392"
"master.28393"
"master.28394"
)
Pstream initialized with:
floatTransfer : 0
nProcsSimpleSum : 0
commsType : nonBlocking
polling iterations : 0
sigFpe : Enabling floating point exception trapping (FOAM_SIGFPE).
fileModificationChecking : Monitoring run-time modified files using timeStampMaster
allowSystemOperations : Allowing user-supplied system call operations
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
Create time
Create mesh for time = 0
Time = 0
Valid fields:
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 2 in communicator MPI_COMM_WORLD
with errorcode 1.
NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------
Hoping that someone can help !
Cheers,
Clément |
