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July 5, 2018, 08:42
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extBlockMesh compilation errors OpenFoam 5
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#1 |
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New Member
Héctor Lodoso
Join Date: Oct 2015
Location: Spain
Posts: 15
Rep Power: 10  |
Hello,
I was trying to compile this interesting tool developed by Etudes-NG some years ago for snapping surfaces with blockMesh (called extBlockMesh): https://github.com/Etudes-NG/extBlockMesh The problem is that it was built for openFoam 2.X.X and it does not run in the new version 5. Some errors come up during the compilation process. I am sure these are pretty easy to fix but I am new in the OpenFoam world and still is a bit confusing to me. Any help is welcome. Code:
$ ./Allwmake.sh
+ export EXTBLOCKMESH_CODE=/cygdrive/c/OpenFOAM/18.02/hlodoso-dev/run/extBlockMe sh
+ EXTBLOCKMESH_CODE=/cygdrive/c/OpenFOAM/18.02/hlodoso-dev/run/extBlockMesh
+ wmake MeshSmoother
wmake MeshSmoother
wmakeLnInclude: linking include files to ./lnInclude
Making dependency list for source file SmootherBoundaryLayer.cpp
Making dependency list for source file SmootherSurface.cpp
Making dependency list for source file SmootherFeature.cpp
Making dependency list for source file SmootherEdge.cpp
Making dependency list for source file SmootherVertex.cpp
Making dependency list for source file SmootherPoint.cpp
Making dependency list for source file SmootherCell.cpp
Making dependency list for source file SmootherParameter.cpp
Making dependency list for source file SmootherControl.cpp
Making dependency list for source file SmootherBoundary.cpp
Making dependency list for source file MeshSmoother.cpp
x86_64-w64-mingw32-g++ -m64 -std=c++11 -Dcygwin64 -DWM_ARCH_OPTION=64 -DWM_DP -D WM_LABEL_SIZE=32 -DMSWIN -DLITTLE_ENDIAN -DMSWIN -DLITTLE_ENDIAN -Wall -Wextra - Wold-style-cast -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof - O3 -DNoRepository -ftemplate-depth-100 -I/opt/OpenFOAM/OpenFOAM-dev/src/mesh/bl ockMesh/lnInclude -I/opt/OpenFOAM/OpenFOAM-dev/src/meshTools/lnInclude -I/opt/Op enFOAM/OpenFOAM-dev/src/edgeMesh/lnInclude -I/opt/OpenFOAM/OpenFOAM-dev/src/dyna micMesh/lnInclude -I/opt/OpenFOAM/OpenFOAM-dev/src/fileFormats/lnInclude -I/opt/ OpenFOAM/OpenFOAM-dev/src/finiteVolume/lnInclude -I/opt/OpenFOAM/OpenFOAM-dev/sr c/triSurface/lnInclude -I/cygdrive/c/OpenFOAM/18.02/hlodoso-dev/run/extBlockMesh /MeshSmoother -I/cygdrive/c/OpenFOAM/18.02/hlodoso-dev/run/extBlockMesh/MeshSmoo ther/Point -I/cygdrive/c/OpenFOAM/18.02/hlodoso-dev/run/extBlockMesh/MeshSmoothe r/Point/Features -I/cygdrive/c/OpenFOAM/18.02/hlodoso-dev/run/extBlockMesh/MeshS moother/BoundaryLayer -IlnInclude -I. -I/opt/OpenFOAM/OpenFOAM-dev/src/OpenFOAM/ lnInclude -I/opt/OpenFOAM/OpenFOAM-dev/src/OSspecific/MSWindows/lnInclude -c M eshSmoother.cpp -o Make/cygwin64mingw-w64DPInt32Opt/MeshSmoother.o
x86_64-w64-mingw32-g++ -m64 -std=c++11 -Dcygwin64 -DWM_ARCH_OPTION=64 -DWM_DP -D WM_LABEL_SIZE=32 -DMSWIN -DLITTLE_ENDIAN -DMSWIN -DLITTLE_ENDIAN -Wall -Wextra - Wold-style-cast -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof - O3 -DNoRepository -ftemplate-depth-100 -I/opt/OpenFOAM/OpenFOAM-dev/src/mesh/bl ockMesh/lnInclude -I/opt/OpenFOAM/OpenFOAM-dev/src/meshTools/lnInclude -I/opt/Op enFOAM/OpenFOAM-dev/src/edgeMesh/lnInclude -I/opt/OpenFOAM/OpenFOAM-dev/src/dyna micMesh/lnInclude -I/opt/OpenFOAM/OpenFOAM-dev/src/fileFormats/lnInclude -I/opt/ OpenFOAM/OpenFOAM-dev/src/finiteVolume/lnInclude -I/opt/OpenFOAM/OpenFOAM-dev/sr c/triSurface/lnInclude -I/cygdrive/c/OpenFOAM/18.02/hlodoso-dev/run/extBlockMesh /MeshSmoother -I/cygdrive/c/OpenFOAM/18.02/hlodoso-dev/run/extBlockMesh/MeshSmoo ther/Point -I/cygdrive/c/OpenFOAM/18.02/hlodoso-dev/run/extBlockMesh/MeshSmoothe r/Point/Features -I/cygdrive/c/OpenFOAM/18.02/hlodoso-dev/run/extBlockMesh/MeshS moother/BoundaryLayer -IlnInclude -I. -I/opt/OpenFOAM/OpenFOAM-dev/src/OpenFOAM/ lnInclude -I/opt/OpenFOAM/OpenFOAM-dev/src/OSspecific/MSWindows/lnInclude -c S mootherBoundary.cpp -o Make/cygwin64mingw-w64DPInt32Opt/SmootherBoundary.o
SmootherBoundary.cpp: In member function ‘void Foam::SmootherBoundary::analyseDi ct(Foam::dictionary&)’:
SmootherBoundary.cpp:99:67: error: ‘class Foam::IOobject’ has no member named ‘f ilePath’
triSurface* bnd = new triSurface(surfFile.filePath());
^
make: *** [/opt/OpenFOAM/OpenFOAM-dev/wmake/rules/General/transform:26: Make/cyg win64mingw-w64DPInt32Opt/SmootherBoundary.o] Error 1
+ wmake
Making dependency list for source file extBlockMesh.cpp
x86_64-w64-mingw32-g++ -m64 -std=c++11 -Dcygwin64 -DWM_ARCH_OPTION=64 -DWM_DP -D WM_LABEL_SIZE=32 -DMSWIN -DLITTLE_ENDIAN -DMSWIN -DLITTLE_ENDIAN -Wall -Wextra - Wold-style-cast -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof - O3 -DNoRepository -ftemplate-depth-100 -I/opt/OpenFOAM/OpenFOAM-dev/src/mesh/bl ockMesh/lnInclude -I/opt/OpenFOAM/OpenFOAM-dev/src/meshTools/lnInclude -I/opt/Op enFOAM/OpenFOAM-dev/src/dynamicMesh/lnInclude -I/opt/OpenFOAM/OpenFOAM-dev/src/f initeVolume/lnInclude -I/opt/OpenFOAM/OpenFOAM-dev/src/triSurface/lnInclude -I/o pt/OpenFOAM/OpenFOAM-dev/src/fileFormats/lnInclude -I/cygdrive/c/OpenFOAM/18.02/ hlodoso-dev/run/extBlockMesh/MeshSmoother -IlnInclude -I. -I/opt/OpenFOAM/OpenFO AM-dev/src/OpenFOAM/lnInclude -I/opt/OpenFOAM/OpenFOAM-dev/src/OSspecific/MSWind ows/lnInclude -c extBlockMesh.cpp -o Make/cygwin64mingw-w64DPInt32Opt/extBlock Mesh.o
extBlockMesh.cpp: In function ‘int main(int, char**)’:
extBlockMesh.cpp:169:21: error: ‘class Foam::IOobject’ has no member named ‘head erOk’
if (!meshDictIO.headerOk())
^
extBlockMesh.cpp:181:29: error: cannot call member function ‘void Foam::blockMes h::verbose(bool)’ without object
blockMesh::verbose(false);
^
extBlockMesh.cpp:267:25: error: ‘class Foam::IOobject’ has no member named ‘head erOk’
if (!smootherDictIO.headerOk())
^
extBlockMesh.cpp:340:54: error: invalid initialization of reference of type ‘con st labelListList& {aka const Foam::List<Foam::List<int> >&}’ from expression of type ‘Foam::List<Foam::FixedList<int, 8u> >’
const labelListList& blockCells = b.cells();
^
extBlockMesh.cpp:341:38: error: ‘const class Foam::block’ has no member named ‘b lockDef’
const word& zoneName = b.blockDef().zoneName();
^
make: *** [/opt/OpenFOAM/OpenFOAM-dev/wmake/rules/General/transform:26: Make/cyg win64mingw-w64DPInt32Opt/extBlockMesh.o] Error 1
+ wmake hexMeshSmoother
wmake hexMeshSmoother
Making dependency list for source file hexMeshSmoother.cpp
x86_64-w64-mingw32-g++ -m64 -std=c++11 -Dcygwin64 -DWM_ARCH_OPTION=64 -DWM_DP -D WM_LABEL_SIZE=32 -DMSWIN -DLITTLE_ENDIAN -DMSWIN -DLITTLE_ENDIAN -Wall -Wextra - Wold-style-cast -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof - O3 -DNoRepository -ftemplate-depth-100 -I/opt/OpenFOAM/OpenFOAM-dev/src/mesh/bl ockMesh/lnInclude -I/opt/OpenFOAM/OpenFOAM-dev/src/meshTools/lnInclude -I/opt/Op enFOAM/OpenFOAM-dev/src/dynamicMesh/lnInclude -I/opt/OpenFOAM/OpenFOAM-dev/src/f initeVolume/lnInclude -I/opt/OpenFOAM/OpenFOAM-dev/src/triSurface/lnInclude -I/o pt/OpenFOAM/OpenFOAM-dev/src/fileFormats/lnInclude -I/cygdrive/c/OpenFOAM/18.02/ hlodoso-dev/run/extBlockMesh/MeshSmoother -IlnInclude -I. -I/opt/OpenFOAM/OpenFO AM-dev/src/OpenFOAM/lnInclude -I/opt/OpenFOAM/OpenFOAM-dev/src/OSspecific/MSWind ows/lnInclude -c hexMeshSmoother.cpp -o Make/cygwin64mingw-w64DPInt32Opt/hexMe shSmoother.o
hexMeshSmoother.cpp: In function ‘int main(int, char**)’:
hexMeshSmoother.cpp:75:25: error: ‘class Foam::IOobject’ has no member named ‘he aderOk’
if (!smootherDictIO.headerOk())
^
make: *** [/opt/OpenFOAM/OpenFOAM-dev/wmake/rules/General/transform:26: Make/cyg win64mingw-w64DPInt32Opt/hexMeshSmoother.o] Error 1
__________________
Best regards! Héctor Lodoso |
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July 19, 2018, 07:17
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#2 |
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New Member
Join Date: Jun 2018
Posts: 11
Rep Power: 7 |
Hi guys I am also very interested in using the extblockmesh tool. I was wondering if you just used the extblockmesh utility for smoothing the mesh or also for the snapping behavior to the more complex shapes?
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July 19, 2018, 07:44
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#3 |
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Senior Member
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Hi,
The blockMesh of recent OpenFOAM can project mesh onto geometry faces. https://cfd.direct/openfoam/user-gui...#x25-1790005.3 "blockMesh can be configured to create body fitted meshes using projection of vertices, edges and/or faces onto specified geometry." The User guide explain it. Tutorials using this functionality are included in the OpenFOAM under tutorials/mesh/blockMesh. |
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July 19, 2018, 07:50
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#4 |
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Senior Member
anonymous
Join Date: Jan 2016
Posts: 416
Rep Power: 14 |
Hi!
I think it is included in OF6, maybe in OF5, and v1712 and v1806. You can find examples in $FOAM_TUTORIALS/mesh/blockMesh for example the sphere case. (Based on their page, this is nearly the same as extBlockMesh. You define a block, a surface, and project a face of the block to the surface) |
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July 19, 2018, 08:00
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#5 |
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New Member
Join Date: Jun 2018
Posts: 11
Rep Power: 7 |
Oh thats great to know thanks i didnt know blockmesh had that functionaity.
related question: would you know of a tool/utility/trick to use to run a mesh smoother on a blockmesh mesh file. I have a rather complex shape which i just put in blockmesh but there are some mesh quality issues. |
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July 19, 2018, 08:08
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#6 |
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Senior Member
anonymous
Join Date: Jan 2016
Posts: 416
Rep Power: 14 |
It is just a guess but what if you run a snappy on it without the castellation step?
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August 14, 2018, 03:53
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#7 | |
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New Member
Orcun Kozaka
Join Date: Dec 2009
Posts: 6
Rep Power: 16 |
Quote:
Hi did you find an answer to your smoothing question by any chance? Edit: I tried compiling eBM (extBlockMesh) with OF5.x. In my case the make script directly jumps to linking stage without compiling the source. I am pretty sure this is a rookie mistake for compilation stage but any help would be appreciated. I am thinking of giving a shot to fix other compilation errors if they are in the range of my programming capability. Anyway, below you can find the error output for anyone interested. [kozaka@anka extBlockMesh]$ ./Allwmake.sh + export EXTBLOCKMESH_CODE=/yapboz/kozaka/OpenFOAM/kozaka-5.x/extBlockMesh + EXTBLOCKMESH_CODE=/yapboz/kozaka/OpenFOAM/kozaka-5.x/extBlockMesh + wmake MeshSmoother wmake MeshSmoother wmakeLnInclude: linking include files to ./lnInclude Making dependency list for source file SmootherBoundaryLayer.cpp Making dependency list for source file SmootherSurface.cpp Making dependency list for source file SmootherFeature.cpp Making dependency list for source file SmootherEdge.cpp Making dependency list for source file SmootherVertex.cpp Making dependency list for source file SmootherPoint.cpp Making dependency list for source file SmootherCell.cpp Making dependency list for source file SmootherParameter.cpp Making dependency list for source file SmootherControl.cpp Making dependency list for source file SmootherBoundary.cpp Making dependency list for source file MeshSmoother.cpp g++ -std=c++11 -m64 -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wold-style-cast -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -O3 -DNoRepository -ftemplate-depth-100 -I/opt/OpenFOAM/OpenFOAM-5.x/src/mesh/blockMesh/lnInclude -I/opt/OpenFOAM/OpenFOAM-5.x/src/meshTools/lnInclude -I/opt/OpenFOAM/OpenFOAM-5.x/src/edgeMesh/lnInclude -I/opt/OpenFOAM/OpenFOAM-5.x/src/dynamicMesh/lnInclude -I/opt/OpenFOAM/OpenFOAM-5.x/src/fileFormats/lnInclude -I/opt/OpenFOAM/OpenFOAM-5.x/src/finiteVolume/lnInclude -I/opt/OpenFOAM/OpenFOAM-5.x/src/triSurface/lnInclude -I/yapboz/kozaka/OpenFOAM/kozaka-5.x/extBlockMesh/MeshSmoother -I/yapboz/kozaka/OpenFOAM/kozaka-5.x/extBlockMesh/MeshSmoother/Point -I/yapboz/kozaka/OpenFOAM/kozaka-5.x/extBlockMesh/MeshSmoother/Point/Features -I/yapboz/kozaka/OpenFOAM/kozaka-5.x/extBlockMesh/MeshSmoother/BoundaryLayer -IlnInclude -I. -I/opt/OpenFOAM/OpenFOAM-5.x/src/OpenFOAM/lnInclude -I/opt/OpenFOAM/OpenFOAM-5.x/src/OSspecific/POSIX/lnInclude -fPIC -shared -Xlinker --add-needed -Xlinker --no-as-needed Make/linux64GccDPInt32Opt/MeshSmoother.o Make/linux64GccDPInt32Opt/SmootherBoundary.o Make/linux64GccDPInt32Opt/SmootherControl.o Make/linux64GccDPInt32Opt/SmootherParameter.o Make/linux64GccDPInt32Opt/SmootherCell.o Make/linux64GccDPInt32Opt/Point/SmootherPoint.o Make/linux64GccDPInt32Opt/Point/SmootherVertex.o Make/linux64GccDPInt32Opt/Point/Features/SmootherEdge.o Make/linux64GccDPInt32Opt/Point/Features/SmootherFeature.o Make/linux64GccDPInt32Opt/Point/Features/SmootherSurface.o Make/linux64GccDPInt32Opt/BoundaryLayer/SmootherBoundaryLayer.o -L/opt/OpenFOAM/OpenFOAM-5.x/platforms/linux64GccDPInt32Opt/lib \ -lblockMesh -lmeshTools -ledgeMesh -lfiniteVolume -ldynamicMesh -o /yapboz/kozaka/OpenFOAM/kozaka-5.x/platforms/linux64GccDPInt32Opt/lib/libMeshSmoother.so g++: error: Make/linux64GccDPInt32Opt/MeshSmoother.o: No such file or directory g++: error: Make/linux64GccDPInt32Opt/SmootherBoundary.o: No such file or directory g++: error: Make/linux64GccDPInt32Opt/SmootherControl.o: No such file or directory g++: error: Make/linux64GccDPInt32Opt/SmootherParameter.o: No such file or directory g++: error: Make/linux64GccDPInt32Opt/SmootherCell.o: No such file or directory g++: error: Make/linux64GccDPInt32Opt/Point/SmootherPoint.o: No such file or directory g++: error: Make/linux64GccDPInt32Opt/Point/SmootherVertex.o: No such file or directory g++: error: Make/linux64GccDPInt32Opt/Point/Features/SmootherEdge.o: No such file or directory g++: error: Make/linux64GccDPInt32Opt/Point/Features/SmootherFeature.o: No such file or directory g++: error: Make/linux64GccDPInt32Opt/Point/Features/SmootherSurface.o: No such file or directory g++: error: Make/linux64GccDPInt32Opt/BoundaryLayer/SmootherBoundaryLayer.o: No such file or directory make: *** [/yapboz/kozaka/OpenFOAM/kozaka-5.x/platforms/linux64GccDPInt32Opt/lib/libMeshSmoother.so] Error 1 + wmake Making dependency list for source file extBlockMesh.cpp g++ -std=c++11 -m64 -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wold-style-cast -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -O3 -DNoRepository -ftemplate-depth-100 -I/opt/OpenFOAM/OpenFOAM-5.x/src/mesh/blockMesh/lnInclude -I/opt/OpenFOAM/OpenFOAM-5.x/src/meshTools/lnInclude -I/opt/OpenFOAM/OpenFOAM-5.x/src/dynamicMesh/lnInclude -I/opt/OpenFOAM/OpenFOAM-5.x/src/finiteVolume/lnInclude -I/opt/OpenFOAM/OpenFOAM-5.x/src/triSurface/lnInclude -I/opt/OpenFOAM/OpenFOAM-5.x/src/fileFormats/lnInclude -I/yapboz/kozaka/OpenFOAM/kozaka-5.x/extBlockMesh/MeshSmoother -IlnInclude -I. -I/opt/OpenFOAM/OpenFOAM-5.x/src/OpenFOAM/lnInclude -I/opt/OpenFOAM/OpenFOAM-5.x/src/OSspecific/POSIX/lnInclude -fPIC -Xlinker --add-needed -Xlinker --no-as-needed Make/linux64GccDPInt32Opt/extBlockMesh.o -L/opt/OpenFOAM/OpenFOAM-5.x/platforms/linux64GccDPInt32Opt/lib \ -lblockMesh -lmeshTools -ledgeMesh -ldynamicMesh -L/yapboz/kozaka/OpenFOAM/kozaka-5.x/platforms/linux64GccDPInt32Opt/lib -lMeshSmoother -lOpenFOAM -ldl \ -lm -o /yapboz/kozaka/OpenFOAM/kozaka-5.x/platforms/linux64GccDPInt32Opt/bin/extBlockMesh g++: error: Make/linux64GccDPInt32Opt/extBlockMesh.o: No such file or directory make: *** [/yapboz/kozaka/OpenFOAM/kozaka-5.x/platforms/linux64GccDPInt32Opt/bin/extBlockMesh] Error 1 + wmake hexMeshSmoother wmake hexMeshSmoother Making dependency list for source file hexMeshSmoother.cpp g++ -std=c++11 -m64 -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wold-style-cast -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -O3 -DNoRepository -ftemplate-depth-100 -I/opt/OpenFOAM/OpenFOAM-5.x/src/mesh/blockMesh/lnInclude -I/opt/OpenFOAM/OpenFOAM-5.x/src/meshTools/lnInclude -I/opt/OpenFOAM/OpenFOAM-5.x/src/dynamicMesh/lnInclude -I/opt/OpenFOAM/OpenFOAM-5.x/src/finiteVolume/lnInclude -I/opt/OpenFOAM/OpenFOAM-5.x/src/triSurface/lnInclude -I/opt/OpenFOAM/OpenFOAM-5.x/src/fileFormats/lnInclude -I/yapboz/kozaka/OpenFOAM/kozaka-5.x/extBlockMesh/MeshSmoother -IlnInclude -I. -I/opt/OpenFOAM/OpenFOAM-5.x/src/OpenFOAM/lnInclude -I/opt/OpenFOAM/OpenFOAM-5.x/src/OSspecific/POSIX/lnInclude -fPIC -Xlinker --add-needed -Xlinker --no-as-needed Make/linux64GccDPInt32Opt/hexMeshSmoother.o -L/opt/OpenFOAM/OpenFOAM-5.x/platforms/linux64GccDPInt32Opt/lib \ -lblockMesh -lmeshTools -ledgeMesh -ldynamicMesh -L/yapboz/kozaka/OpenFOAM/kozaka-5.x/platforms/linux64GccDPInt32Opt/lib -lMeshSmoother -lOpenFOAM -ldl \ -lm -o /yapboz/kozaka/OpenFOAM/kozaka-5.x/platforms/linux64GccDPInt32Opt/bin/hexMeshSmoother g++: error: Make/linux64GccDPInt32Opt/hexMeshSmoother.o: No such file or directory make: *** [/yapboz/kozaka/OpenFOAM/kozaka-5.x/platforms/linux64GccDPInt32Opt/bin/hexMeshSmoother] Error 1 Last edited by excolade; August 14, 2018 at 04:05. Reason: Added compilation error output. |
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August 28, 2018, 05:59
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Different solution - moveDynamicMesh
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#8 | |
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New Member
Héctor Lodoso
Join Date: Oct 2015
Location: Spain
Posts: 15
Rep Power: 10 |
Quote:
Hi all, Unfortunately I have been a long time disconnected of the forum. I already knew the project capability of blockMesh but it did not exactly behave as I needed since it generates high skewness and non-orthogonality in the first layers of cells when projecting over complex shapes (in my case complex terrains for ABL simulation). I was finally told about another possibility through moveDynamicMesh solver which provides better adjustment. See the tutorial in tutorials/mesh/moveDynamicMesh. Still I suspect is not sufficiently good for really really complex terrains... PD: forget about the compilation errors of extBlockMesh, they were already solved by a colleague too.
__________________
Best regards! Héctor Lodoso |
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October 3, 2019, 13:32
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#9 | |
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New Member
Mansur Zhussupbekov
Join Date: Mar 2017
Location: Ithaca, NY, USA
Posts: 4
Rep Power: 9 |
Quote:
Would you be able to share how to fix the compilation error of extBlockMesh? I am trying to use it with OF6, still getting the error. Thank you, Mansur |
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| Tags |
| compilation, extblockmesh, filepath, headerok, openfoam 5.0 |
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