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Different error messages for different number of cores

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Old   October 6, 2014, 23:12
Default Different error messages for different number of cores
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Pruthvi
Join Date: Feb 2014
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Hello everybody ! I made a case of a plunging airfoil. I get a different error message for different choice of the number of cores in decomposePar. You can notice that the simulation ran longer before crashing on a single core. Any suggestions? Here is the link to the github repository if anyone wants to take a closer look at the case file. https://github.com/pruthvi1991/pimpl.../onemeterplate
To run the case execute ./runAmbient

8 cores :
/*---------------------------------------------------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: 2.3.0 |
| \\ / A nd | Web: www.OpenFOAM.org |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
Build : 2.3.0-f5222ca19ce6
Exec : pimpleDyMFoam -parallel
Date : Oct 06 2014
Time : 22:57:39
Host : "ubuntu"
PID : 4487
Case : /home/jujja/GIT1/pimpleDyMFoam-Tutorials/onemeterplate/plungingAmbient
nProcs : 8
Slaves :
7
(
"ubuntu.4488"
"ubuntu.4489"
"ubuntu.4490"
"ubuntu.4491"
"ubuntu.4492"
"ubuntu.4493"
"ubuntu.4494"
)

Pstream initialized with:
floatTransfer : 0
nProcsSimpleSum : 0
commsType : nonBlocking
polling iterations : 0
sigFpe : Enabling floating point exception trapping (FOAM_SIGFPE).
fileModificationChecking : Monitoring run-time modified files using timeStampMaster
allowSystemOperations : Disallowing user-supplied system call operations

// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
Create time

Create mesh for time = 0

Selecting dynamicFvMesh dynamicMotionSolverFvMesh
Selecting motion solver: sixDoFRigidBodyMotion
Translational constraint tensor (0 0 0 0 1 0 0 0 0)
Rotational constraint tensor (0 0 0 0 0 0 0 0 1)

PIMPLE: no residual control data found. Calculations will employ 2 corrector loops

Reading field p

Reading field U

Reading/calculating face flux field phi

Selecting incompressible transport model Newtonian
Selecting turbulence model type laminar
Reading/calculating face velocity Uf

No finite volume options present

Courant Number mean: 0.0359967374 max: 3.800068374
forces forceCoeffs:
Not including porosity effects


Starting time loop

Courant Number mean: 0.008521613999 max: 0.8996014136
deltaT = 0.02367329545
Time = 0.0236733


Restraint verticalSpring: attachmentPt - anchor (0 0.0009090545455 0) spring length 0.0009090545455 force (-0 -0.5167877036 -0)
Restraint axialSpring: angle 0 moment (-0 -0 -0)
Centre of mass: (0.2285 0.005909054545 0.00125)
Linear velocity: (0 0.03839993883 0)
Angular velocity: (0 0 -1.458710918e-16)
GAMG: Solving for pcorr, Initial residual = 1, Final residual = 0.0195597627, No Iterations 1
time step continuity errors : sum local = 6.62932059e-06, global = -1.570391898e-13, cumulative = -1.570391898e-13
PIMPLE: iteration 1
smoothSolver: Solving for Ux, Initial residual = 0.004289549726, Final residual = 0.0001821391148, No Iterations 1
smoothSolver: Solving for Uy, Initial residual = 0.09166906896, Final residual = 0.004745910625, No Iterations 1
GAMG: Solving for p, Initial residual = 0.9399326782, Final residual = 0.006857305325, No Iterations 13
time step continuity errors : sum local = 1.044449433e-07, global = -2.584569638e-21, cumulative = -1.570391924e-13
PIMPLE: iteration 2
smoothSolver: Solving for Ux, Initial residual = 0.03573538481, Final residual = 8.959431174e-07, No Iterations 7
smoothSolver: Solving for Uy, Initial residual = 0.02577255203, Final residual = 7.31496261e-07, No Iterations 7
GAMG: Solving for p, Initial residual = 0.8393315706, Final residual = 7.271531519e-08, No Iterations 51
time step continuity errors : sum local = 1.447517984e-12, global = 1.32039569e-20, cumulative = -1.570391792e-13
ExecutionTime = 0.64 s ClockTime = 0 s

[ubuntu:04491] *** Process received signal ***
[ubuntu:04491] Signal: Aborted (6)
[ubuntu:04491] Signal code: (-6)
[ubuntu:04491] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x36150) [0x7f90452ec150]
[ubuntu:04491] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35) [0x7f90452ec0d5]
[ubuntu:04491] [ 2] /lib/x86_64-linux-gnu/libc.so.6(abort+0x17b) [0x7f90452ef83b]
[ubuntu:04491] [ 3] /lib/x86_64-linux-gnu/libc.so.6(+0x7404e) [0x7f904532a04e]
[ubuntu:04491] [ 4] /lib/x86_64-linux-gnu/libc.so.6(+0x7e846) [0x7f9045334846]
[ubuntu:04491] [ 5] /opt/openfoam230/platforms/linux64GccDPOpt/lib/libsampling.so(_ZN4Foam4ListINS_5FieldINS_6VectorI dEEEEE7setSizeEi+0x15c) [0x7f9047c8965c]
[ubuntu:04491] [ 6] /opt/openfoam230/platforms/linux64GccDPOpt/lib/libforces.so(_ZN4FoamrsINS_5FieldINS_6VectorIdEEEE EERNS_7IstreamES6_RNS_4ListIT_EE+0x1d) [0x7f903cd1ef0d]
[ubuntu:04491] [ 7] /opt/openfoam230/platforms/linux64GccDPOpt/lib/libforces.so(_ZN4Foam7Pstream18listCombineScatterI NS_5FieldINS_6VectorIdEEEEEEvRKNS_4ListINS_8UPstre am11commsStructEEERNS6_IT_EEii+0xc3) [0x7f903cd1f3a3]
[ubuntu:04491] [ 8] /opt/openfoam230/platforms/linux64GccDPOpt/lib/libforces.so(_ZN4Foam6forces16calcForcesMomentEv+0 x457) [0x7f903cd0c417]
[ubuntu:04491] [ 9] /opt/openfoam230/platforms/linux64GccDPOpt/lib/libforces.so(_ZN4Foam6forces5writeEv+0xd) [0x7f903cd072bd]
[ubuntu:04491] [10] /opt/openfoam230/platforms/linux64GccDPOpt/lib/libforces.so(_ZN4Foam26OutputFilterFunctionObjectI NS_6forcesEE7executeEb+0x87) [0x7f903cd357f7]
[ubuntu:04491] [11] /opt/openfoam230/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam18functionObjectList7execut eEb+0x59) [0x7f904638bf19]
[ubuntu:04491] [12] /opt/openfoam230/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZNK4Foam4Time3runEv+0xb0) [0x7f9046399160]
[ubuntu:04491] [13] pimpleDyMFoam() [0x41b6d6]
[ubuntu:04491] [14] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7f90452d776d]
[ubuntu:04491] [15] pimpleDyMFoam() [0x42111d]
[ubuntu:04491] *** End of error message ***
[ubuntu:04489] *** Process received signal ***
[ubuntu:04489] Signal: Aborted (6)
[ubuntu:04489] Signal code: (-6)
[ubuntu:04489] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x36150) [0x7f4a72395150]
[ubuntu:04489] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35) [0x7f4a723950d5]
[ubuntu:04489] [ 2] /lib/x86_64-linux-gnu/libc.so.6(abort+0x17b) [0x7f4a7239883b]
[ubuntu:04489] [ 3] /lib/x86_64-linux-gnu/libc.so.6(+0x7404e) [0x7f4a723d304e]
[ubuntu:04489] [ 4] /lib/x86_64-linux-gnu/libc.so.6(+0x7e846) [0x7f4a723dd846]
[ubuntu:04489] [ 5] /opt/openfoam230/platforms/linux64GccDPOpt/lib/libsampling.so(_ZN4Foam4ListINS_5FieldINS_6VectorI dEEEEE7setSizeEi+0x15c) [0x7f4a74d3265c]
[ubuntu:04489] [ 6] /opt/openfoam230/platforms/linux64GccDPOpt/lib/libforces.so(_ZN4FoamrsINS_5FieldINS_6VectorIdEEEE EERNS_7IstreamES6_RNS_4ListIT_EE+0x1d) [0x7f4a69dc7f0d]
[ubuntu:04489] [ 7] /opt/openfoam230/platforms/linux64GccDPOpt/lib/libforces.so(_ZN4Foam7Pstream18listCombineScatterI NS_5FieldINS_6VectorIdEEEEEEvRKNS_4ListINS_8UPstre am11commsStructEEERNS6_IT_EEii+0xc3) [0x7f4a69dc83a3]
[ubuntu:04489] [ 8] /opt/openfoam230/platforms/linux64GccDPOpt/lib/libforces.so(_ZN4Foam6forces16calcForcesMomentEv+0 x457) [0x7f4a69db5417]
[ubuntu:04489] [ 9] /opt/openfoam230/platforms/linux64GccDPOpt/lib/libforces.so(_ZN4Foam6forces5writeEv+0xd) [0x7f4a69db02bd]
[ubuntu:04489] [10] /opt/openfoam230/platforms/linux64GccDPOpt/lib/libforces.so(_ZN4Foam26OutputFilterFunctionObjectI NS_6forcesEE7executeEb+0x87) [0x7f4a69dde7f7]
[ubuntu:04489] [11] /opt/openfoam230/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam18functionObjectList7execut eEb+0x59) [0x7f4a73434f19]
[ubuntu:04489] [12] /opt/openfoam230/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZNK4Foam4Time3runEv+0xb0) [0x7f4a73442160]
[ubuntu:04489] [13] pimpleDyMFoam() [0x41b6d6]
[ubuntu:04489] [14] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7f4a7238076d]
[ubuntu:04489] [15] pimpleDyMFoam() [0x42111d]
[ubuntu:04489] *** End of error message ***
forces forceCoeffs output:
sum of forces:
pressure : (-0.004736766941 -0.155771773 4.987204996e-23)
viscous : (0.000628067514 2.552365482e-05 1.514583924e-05)
porous : (0 0 0)
sum of moments:
pressure : (0.05452012057 -0.001657868429 0.0004448579899)
viscous : (-8.933279188e-06 0.0002198236299 -1.196703383e-05)
porous : (0 0 0)

--------------------------------------------------------------------------
mpirun noticed that process rank 2 with PID 4489 on node ubuntu exited on signal 6 (Aborted).
--------------------------------------------------------------------------

For 1 core :

Restraint verticalSpring: attachmentPt - anchor (0 0.008716582328 0) spring length 0.008716582328 force (-0 -4.955283032 -0)
Restraint axialSpring: angle 0 moment (-0 -0 -2.642778072e-06)
Centre of mass: (0.2285 0.01371658233 0.00125)
Linear velocity: (0 0.03839434154 0)
Angular velocity: (0 0 2.704179558e-14)
GAMG: Solving for pcorr, Initial residual = 1, Final residual = 4.161437654e-06, No Iterations 1
time step continuity errors : sum local = 6.336466035e-10, global = -2.247258618e-20, cumulative = -1.570399203e-13
PIMPLE: iteration 1
smoothSolver: Solving for Ux, Initial residual = 0.0002042578448, Final residual = 1.35650007e-06, No Iterations 1
smoothSolver: Solving for Uy, Initial residual = 9.011718302e-05, Final residual = 2.948190941e-07, No Iterations 1
GAMG: Solving for p, Initial residual = 0.2901144562, Final residual = 0.002820542286, No Iterations 5
time step continuity errors : sum local = 6.472094593e-10, global = -5.689204981e-21, cumulative = -1.57039926e-13
PIMPLE: iteration 2
smoothSolver: Solving for Ux, Initial residual = 9.678618341e-05, Final residual = 2.162835653e-07, No Iterations 2
smoothSolver: Solving for Uy, Initial residual = 4.124033765e-05, Final residual = 4.110490285e-07, No Iterations 1
GAMG: Solving for p, Initial residual = 0.1116980723, Final residual = 5.730058726e-08, No Iterations 30
time step continuity errors : sum local = 1.58564926e-14, global = -2.484345927e-20, cumulative = -1.570399508e-13
ExecutionTime = 14.52 s ClockTime = 15 s

forces forceCoeffs output:
sum of forces:
pressure : (-0.004466687805 -0.000978876426 -1.137645882e-24)
viscous : (0.0002054393457 -1.792277598e-05 1.514980186e-16)
porous : (0 0 0)
sum of moments:
pressure : (0.0003426067491 -0.001563340732 0.0001394355889)
viscous : (6.272971594e-06 7.190377101e-05 -2.345283973e-06)
porous : (0 0 0)

Courant Number mean: 0.006302539159 max: 0.8962720846
deltaT = 0.01085260167
Time = 0.237858


Restraint verticalSpring: attachmentPt - anchor (0 0.009133257912 0) spring length 0.009133257912 force (-0 -5.192158607 -0)
Restraint axialSpring: angle 0 moment (-0 -0 -2.765581045e-06)
Centre of mass: (0.2285 0.01413325791 0.00125)
Linear velocity: (0 0.03839379154 0)
Angular velocity: (0 0 2.826802946e-14)
#0 Foam::error:rintStack(Foam::Ostream&) in "/opt/openfoam230/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
#1 Foam::sigSegv::sigHandler(int) in "/opt/openfoam230/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
#2 in "/lib/x86_64-linux-gnu/libc.so.6"
#3 Foam::face::centre(Foam::Field<Foam::Vector<double > > const&) const in "/opt/openfoam230/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
#4 Foam::face::sweptVol(Foam::Field<Foam::Vector<doub le> > const&, Foam::Field<Foam::Vector<double> > const&) const in "/opt/openfoam230/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
#5 Foam:rimitiveMesh::movePoints(Foam::Field<Foam:: Vector<double> > const&, Foam::Field<Foam::Vector<double> > const&) in "/opt/openfoam230/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
#6 Foam:olyMesh::movePoints(Foam::Field<Foam::Vecto r<double> > const&) in "/opt/openfoam230/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
#7 Foam::fvMesh::movePoints(Foam::Field<Foam::Vector< double> > const&) in "/opt/openfoam230/platforms/linux64GccDPOpt/lib/libfiniteVolume.so"
#8 Foam::dynamicMotionSolverFvMesh::update() in "/opt/openfoam230/platforms/linux64GccDPOpt/lib/libdynamicFvMesh.so"
#9
in "/opt/openfoam230/platforms/linux64GccDPOpt/bin/pimpleDyMFoam"
#10 __libc_start_main in "/lib/x86_64-linux-gnu/libc.so.6"
#11
in "/opt/openfoam230/platforms/linux64GccDPOpt/bin/pimpleDyMFoam"
Segmentation fault (core dumped)
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