kate.F |
January 13, 2016 20:48 |
Problems running OF on cluster
Dear FOAMers,
I have encountered a problem while running a case on cluster and got the error(part of it):
Quote:
WARNING: Error in initializing MVAPICH2 ptmalloc library.Continuing without InfiniBand registration cache support.
[7] [4] [3] [6] [10] [9] [15] [5]
[4] [7] [3]
[4] [7] [3] [6] --> FOAM FATAL IO ERROR: --> FOAM FATAL IO ERROR: --> FOAM FATAL IO ERROR:
[6]
--> FOAM FATAL IO ERROR: [4] [7] [3]
wrong token type - expected Scalar, found on line 0 the word 'nan'wrong token type - expected Scalar, found on line 0 the word 'nan'
wrong token type - expected Scalar, found on line 0 the word 'nan'
[5]
[4]
[10] [9] [15] [5]
[14] [9] --> FOAM FATAL IO ERROR: [4] --> FOAM FATAL IO ERROR:
[15] file:
[11] /scratch/03857/tg831567/SC5/processor4/system/data.solverPerformance.p[5] [9] [12] at line [8]
[11] [0] 0
.
[4] [11]
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The log file:
Quote:
Time = 20.558
Courant Number mean: 0.028402 max: 0.11946
smoothSolver: Solving for Ux, Initial residual = 0.758777, Final residual = 9.92998e-09, No Iterations 4
smoothSolver: Solving for Uy, Initial residual = 0.399664, Final residual = 2.49574e-08, No Iterations 4
smoothSolver: Solving for Uz, Initial residual = 0.0129346, Final residual = 3.99374e-08, No Iterations 3
GAMG: Solving for p, Initial residual = 0.00802443, Final residual = 0.000744506, No Iterations 21
GAMG: Solving for p, Initial residual = 0.00167003, Final residual = 0.000155684, No Iterations 24
time step continuity errors : sum local = 4.97087e-08, global = 8.01521e-09, cumulative = -5.85061e-07
GAMG: Solving for p, Initial residual = 0.032428, Final residual = 0.00219924, No Iterations 2
GAMG: Solving for p, Initial residual = 0.00244059, Final residual = 9.45781e-07, No Iterations 64
time step continuity errors : sum local = 2.71954e-10, global = 4.74174e-11, cumulative = -5.85013e-07
ExecutionTime = 27940.8 s ClockTime = 28738 s
Time = 20.56
Courant Number mean: 0.0282469 max: 0.118619
smoothSolver: Solving for Ux, Initial residual = 0.327472, Final residual = 4.42746e-09, No Iterations 4
smoothSolver: Solving for Uy, Initial residual = 0.180964, Final residual = 1.13125e-08, No Iterations 4
smoothSolver: Solving for Uz, Initial residual = 0.0103192, Final residual = 3.28473e-08, No Iterations 3
GAMG: Solving for p, Initial residual = 0.00895919, Final residual = 0.000816276, No Iterations 20
GAMG: Solving for p, Initial residual = 0.00165398, Final residual = 0.000153604, No Iterations 24
time step continuity errors : sum local = 2.04548e-08, global = 3.5577e-09, cumulative = -5.81455e-07
GAMG: Solving for p, Initial residual = 1, Final residual = nan, No Iterations 1000
GAMG: Solving for p, Initial residual = nan, Final residual = nan, No Iterations 1000
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And I have run the identical case on the clusters of another institution, as well as on my local machine, it worked well.
It is LES case, cell number 3.75 million. subdomain: simple, (12,4,1). The OpenFOAM versions on the two clusters and my workstation are all 2.3.0. Does any one have any idea about the problem?
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