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rhoSimpleFoam angledDuctExplicitFixedCoeff tutorial fails in parallel

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Old   February 16, 2016, 02:13
Unhappy rhoSimpleFoam angledDuctExplicitFixedCoeff tutorial fails in parallel
  #1
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Al
Join Date: Jul 2013
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Hello,

I tried to launch in parallel the tutorial
tutorials/compressible/rhoSimpleFoam/angledDuctExplicitFixedCoeff
using OpenFOAM-2.3.0 and OpenFOAM-2.4.0

and in both tests I get the following error:
Code:
/*---------------------------------------------------------------------------*\
| =========                 |                                                 |
| \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox           |
|  \\    /   O peration     | Version:  2.3.0                                 |
|   \\  /    A nd           | Web:      www.OpenFOAM.org                      |
|    \\/     M anipulation  |                                                 |
\*---------------------------------------------------------------------------*/
Build  : 2.3.0
Exec   : rhoSimpleFoam -parallel
Date   : Feb 16 2016
Time   : 14:51:09
Host   : "localhost.localdomain"
PID    : 15539
Case   : /opt/OpenFOAM-2.3.0/tutorials/compressible/rhoSimpleFoam/angledDuctExplicitFixedCoeff
nProcs : 2
Slaves : 1("localhost.localdomain.15541")
Pstream initialized with:
    floatTransfer      : 0
    nProcsSimpleSum    : 0
    commsType          : nonBlocking
    polling iterations : 0
sigFpe : Enabling floating point exception trapping (FOAM_SIGFPE).
fileModificationChecking : Monitoring run-time modified files using timeStampMaster
allowSystemOperations : Disallowing user-supplied system call operations

// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
Create time

Create mesh for time = 0


SIMPLE: convergence criteria
    field p     tolerance 0.01
    field U     tolerance 0.0001
    field e     tolerance 0.001
    field "(k|epsilon|omega)"     tolerance 0.001

Reading thermophysical properties

Selecting thermodynamics package 
{
    type            hePsiThermo;
    mixture         pureMixture;
    transport       sutherland;
    thermo          hConst;
    equationOfState perfectGas;
    specie          specie;
    energy          sensibleInternalEnergy;
}
}

[0] [1] #0  Foam::error::printStack(Foam::Ostream&)#0  Foam::error::printStack(Foam::Ostream&) in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[0] #1  Foam::sigFpe::sigHandler(int) in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[1] #1  Foam::sigFpe::sigHandler(int) in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[0] #2  
 in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[1] #2  
[0]  at sigaction.c:0
[0] #3  Foam::heThermo<Foam::psiThermo, Foam::pureMixture<Foam::sutherlandTransport<Foam::species::thermo<Foam::hConstThermo<Foam::perfectGas<Foam::specie> >, Foam::sensibleInternalEnergy> > > >::he(Foam::Field<double> const&, Foam::Field<double> const&, int) const[1]  at sigaction.c:0
[1] #3  Foam::heThermo<Foam::psiThermo, Foam::pureMixture<Foam::sutherlandTransport<Foam::species::thermo<Foam::hConstThermo<Foam::perfectGas<Foam::specie> >, Foam::sensibleInternalEnergy> > > >::he(Foam::Field<double> const&, Foam::Field<double> const&, int) const in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so"
[0] #4  Foam::heThermo<Foam::psiThermo, Foam::pureMixture<Foam::sutherlandTransport<Foam::species::thermo<Foam::hConstThermo<Foam::perfectGas<Foam::specie> >, Foam::sensibleInternalEnergy> > > >::init() in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so"
[0] #5  Foam::heThermo<Foam::psiThermo, Foam::pureMixture<Foam::sutherlandTransport<Foam::species::thermo<Foam::hConstThermo<Foam::perfectGas<Foam::specie> >, Foam::sensibleInternalEnergy> > > >::heThermo(Foam::fvMesh const&, Foam::word const&) in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so"
[1] #4  Foam::heThermo<Foam::psiThermo, Foam::pureMixture<Foam::sutherlandTransport<Foam::species::thermo<Foam::hConstThermo<Foam::perfectGas<Foam::specie> >, Foam::sensibleInternalEnergy> > > >::init() in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so"
[0] #6  Foam::hePsiThermo<Foam::psiThermo, Foam::pureMixture<Foam::sutherlandTransport<Foam::species::thermo<Foam::hConstThermo<Foam::perfectGas<Foam::specie> >, Foam::sensibleInternalEnergy> > > >::hePsiThermo(Foam::fvMesh const&, Foam::word const&) in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so"
[1] #5  Foam::heThermo<Foam::psiThermo, Foam::pureMixture<Foam::sutherlandTransport<Foam::species::thermo<Foam::hConstThermo<Foam::perfectGas<Foam::specie> >, Foam::sensibleInternalEnergy> > > >::heThermo(Foam::fvMesh const&, Foam::word const&) in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so"
[0] #7  Foam::psiThermo::addfvMeshConstructorToTable<Foam::hePsiThermo<Foam::psiThermo, Foam::pureMixture<Foam::sutherlandTransport<Foam::species::thermo<Foam::hConstThermo<Foam::perfectGas<Foam::specie> >, Foam::sensibleInternalEnergy> > > > >::New(Foam::fvMesh const&, Foam::word const&) in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so"
[0] #8  Foam::autoPtr<Foam::psiThermo> Foam::basicThermo::New<Foam::psiThermo>(Foam::fvMesh const&, Foam::word const&) in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so"
[1] #6  Foam::hePsiThermo<Foam::psiThermo, Foam::pureMixture<Foam::sutherlandTransport<Foam::species::thermo<Foam::hConstThermo<Foam::perfectGas<Foam::specie> >, Foam::sensibleInternalEnergy> > > >::hePsiThermo(Foam::fvMesh const&, Foam::word const&) in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so"
[0] #9  Foam::psiThermo::New(Foam::fvMesh const&, Foam::word const&) in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so"
[1] #7  Foam::psiThermo::addfvMeshConstructorToTable<Foam::hePsiThermo<Foam::psiThermo, Foam::pureMixture<Foam::sutherlandTransport<Foam::species::thermo<Foam::hConstThermo<Foam::perfectGas<Foam::specie> >, Foam::sensibleInternalEnergy> > > > >::New(Foam::fvMesh const&, Foam::word const&) in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so"
[0] #10   in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so"
[1] #8  Foam::autoPtr<Foam::psiThermo> Foam::basicThermo::New<Foam::psiThermo>(Foam::fvMesh const&, Foam::word const&)
 in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so"
[1] #9  Foam::psiThermo::New(Foam::fvMesh const&, Foam::word const&) in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so"
[1] #10  [0]  in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/bin/rhoSimpleFoam"
[0] #11  __libc_start_main in "/lib64/libc.so.6"
[0] #12  

[0]  in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/bin/rhoSimpleFoam"
[lnx6:15539] *** Process received signal ***
[lnx6:15539] Signal: Floating point exception (8)
[lnx6:15539] Signal code:  (-6)
[lnx6:15539] Failing at address: 0x7e600003cb3
[lnx6:15539] [ 0] /lib64/libc.so.6() [0x3ce8e326a0]
[lnx6:15539] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x3ce8e32625]
[lnx6:15539] [ 2] /lib64/libc.so.6() [0x3ce8e326a0]
[lnx6:15539] [ 3] /opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so(_ZNK4Foam8heThermoINS_9psiThermoENS_11pureMixtureINS_19sutherlandTransportINS_7species6thermoINS_12hConstThermoINS_10perfectGasINS_6specieEEEEENS_22sensibleInternalEnergyEEEEEEEE2heERKNS_5FieldIdEESJ_i+0x169) [0x7fc0cdf74d09]
[lnx6:15539] [ 4] /opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so(_ZN4Foam8heThermoINS_9psiThermoENS_11pureMixtureINS_19sutherlandTransportINS_7species6thermoINS_12hConstThermoINS_10perfectGasINS_6specieEEEEENS_22sensibleInternalEnergyEEEEEEEE4initEv+0x34a) [0x7fc0cdf8431a]
[lnx6:15539] [ 5] /opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so(_ZN4Foam8heThermoINS_9psiThermoENS_11pureMixtureINS_19sutherlandTransportINS_7species6thermoINS_12hConstThermoINS_10perfectGasINS_6specieEEEEENS_22sensibleInternalEnergyEEEEEEEEC2ERKNS_6fvMeshERKNS_4wordE+0x15d) [0x7fc0cdf8899d]
[lnx6:15539] [ 6] /opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so(_ZN4Foam11hePsiThermoINS_9psiThermoENS_11pureMixtureINS_19sutherlandTransportINS_7species6thermoINS_12hConstThermoINS_10perfectGasINS_6specieEEEEENS_22sensibleInternalEnergyEEEEEEEEC2ERKNS_6fvMeshERKNS_4wordE+0x16) [0x7fc0cdf89d16]
[lnx6:15539] [ 7] /opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so(_ZN4Foam9psiThermo27addfvMeshConstructorToTableINS_11hePsiThermoIS0_NS_11pureMixtureINS_19sutherlandTransportINS_7species6thermoINS_12hConstThermoINS_10perfectGasINS_6specieEEEEENS_22sensibleInternalEnergyEEEEEEEEEE3NewERKNS_6fvMeshERKNS_4wordE+0x3c) [0x7fc0cdf89e8c]
[lnx6:15539] [ 8] /opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so(_ZN4Foam11basicThermo3NewINS_9psiThermoEEENS_7autoPtrIT_EERKNS_6fvMeshERKNS_4wordE+0xec) [0x7fc0cdf70c3c]
[lnx6:15539] [ 9] /opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so(_ZN4Foam9psiThermo3NewERKNS_6fvMeshERKNS_4wordE+0x9) [0x7fc0cdf6ed59]
[lnx6:15539] [10] rhoSimpleFoam() [0x463911]
[lnx6:15539] [11] /lib64/libc.so.6(__libc_start_main+0xfd) [0x3ce8e1ed5d]
[lnx6:15539] [12] rhoSimpleFoam() [0x427045]
[lnx6:15539] *** End of error message ***
[1]  in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/bin/rhoSimpleFoam"
[1] #11  __libc_start_main in "/lib64/libc.so.6"
[1] #12  
[1]  in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/bin/rhoSimpleFoam"
[lnx6:15541] *** Process received signal ***
[lnx6:15541] Signal: Floating point exception (8)
[lnx6:15541] Signal code:  (-6)
[lnx6:15541] Failing at address: 0x7e600003cb5
[lnx6:15541] [ 0] /lib64/libc.so.6() [0x3ce8e326a0]
[lnx6:15541] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x3ce8e32625]
[lnx6:15541] [ 2] /lib64/libc.so.6() [0x3ce8e326a0]
[lnx6:15541] [ 3] /opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so(_ZNK4Foam8heThermoINS_9psiThermoENS_11pureMixtureINS_19sutherlandTransportINS_7species6thermoINS_12hConstThermoINS_10perfectGasINS_6specieEEEEENS_22sensibleInternalEnergyEEEEEEEE2heERKNS_5FieldIdEESJ_i+0x169) [0x7fe04e637d09]
[lnx6:15541] [ 4] /opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so(_ZN4Foam8heThermoINS_9psiThermoENS_11pureMixtureINS_19sutherlandTransportINS_7species6thermoINS_12hConstThermoINS_10perfectGasINS_6specieEEEEENS_22sensibleInternalEnergyEEEEEEEE4initEv+0x34a) [0x7fe04e64731a]
[lnx6:15541] [ 5] /opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so(_ZN4Foam8heThermoINS_9psiThermoENS_11pureMixtureINS_19sutherlandTransportINS_7species6thermoINS_12hConstThermoINS_10perfectGasINS_6specieEEEEENS_22sensibleInternalEnergyEEEEEEEEC2ERKNS_6fvMeshERKNS_4wordE+0x15d) [0x7fe04e64b99d]
[lnx6:15541] [ 6] /opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so(_ZN4Foam11hePsiThermoINS_9psiThermoENS_11pureMixtureINS_19sutherlandTransportINS_7species6thermoINS_12hConstThermoINS_10perfectGasINS_6specieEEEEENS_22sensibleInternalEnergyEEEEEEEEC2ERKNS_6fvMeshERKNS_4wordE+0x16) [0x7fe04e64cd16]
[lnx6:15541] [ 7] /opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so(_ZN4Foam9psiThermo27addfvMeshConstructorToTableINS_11hePsiThermoIS0_NS_11pureMixtureINS_19sutherlandTransportINS_7species6thermoINS_12hConstThermoINS_10perfectGasINS_6specieEEEEENS_22sensibleInternalEnergyEEEEEEEEEE3NewERKNS_6fvMeshERKNS_4wordE+0x3c) [0x7fe04e64ce8c]
[lnx6:15541] [ 8] /opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so(_ZN4Foam11basicThermo3NewINS_9psiThermoEEENS_7autoPtrIT_EERKNS_6fvMeshERKNS_4wordE+0xec) [0x7fe04e633c3c]
[lnx6:15541] [ 9] /opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so(_ZN4Foam9psiThermo3NewERKNS_6fvMeshERKNS_4wordE+0x9) [0x7fe04e631d59]
[lnx6:15541] [10] rhoSimpleFoam() [0x463911]
[lnx6:15541] [11] /lib64/libc.so.6(__libc_start_main+0xfd) [0x3ce8e1ed5d]
[lnx6:15541] [12] rhoSimpleFoam() [0x427045]
[lnx6:15541] *** End of error message ***
--------------------------------------------------------------------------
mpirun noticed that process rank 1 with PID 15541 on node localhost.localdomain exited on signal 8 (Floating point exception).
--------------------------------------------------------------------------
If you have time can you try to launch this tutorial in parallel on your machine and tell me if you get the same error?

Thank you
Al
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Old   February 22, 2016, 20:47
Default
  #2
Member
 
Al
Join Date: Jul 2013
Location: Japan
Posts: 45
Blog Entries: 3
Rep Power: 7
donQi is on a distinguished road
additional note :
the error disappears if you launch the tutorial in parallel using
http://www.openfoam.com/version-v3.0+/

Code:
/volume31/data/hp140187/k02596/OpenFOAM
Running rhoSimpleFoam in parallel on /volume31/data/hp140187/k02596/angledDuctExplicitFixedCoeff using 2 processes
/*---------------------------------------------------------------------------*\
| =========                 |                                                 |
| \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox           |
|  \\    /   O peration     | Version:  plus                                  |
|   \\  /    A nd           | Web:      www.OpenFOAM.com                      |
|    \\/     M anipulation  |                                                 |
\*---------------------------------------------------------------------------*/
Build  : plus
Exec   : rhoSimpleFoam -parallel
Date   : Feb 23 2016
Time   : 08:56:05
Host   : "k42-008"
PID    : 13135
Case   : /volume31/data/hp140187/k02596/angledDuctExplicitFixedCoeff
nProcs : 2
Slaves : 1("k42-008.13137")
Pstream initialized with:
    floatTransfer      : 0
    nProcsSimpleSum    : 0
    commsType          : nonBlocking
    polling iterations : 0
sigFpe : Enabling floating point exception trapping (FOAM_SIGFPE).
fileModificationChecking : Monitoring run-time modified files using timeStampMaster
allowSystemOperations : Allowing user-supplied system call operations

// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
Create time

Create mesh for time = 0


SIMPLE: convergence criteria
    field p      tolerance 0.01
    field U      tolerance 0.0001
    field e      tolerance 0.001
    field "(k|epsilon|omega)"    tolerance 0.001

Reading thermophysical properties

Selecting thermodynamics package
{
    type            hePsiThermo;
    mixture         pureMixture;
    transport       sutherland;
    thermo          hConst;
    equationOfState perfectGas;
    specie          specie;
    energy          sensibleInternalEnergy;
}

Reading field U

Reading/calculating face flux field phi

Creating turbulence model

Selecting RAS turbulence model kEpsilon
kEpsilonCoeffs
{
    Cmu             0.09;
    C1              1.44;
    C2              1.92;
    C3              -0.33;
    sigmak          1;
    sigmaEps        1.3;
}

No MRF models present

Creating finite volume options from "constant/fvOptions"

Selecting finite volume options model type fixedTemperatureConstraint
    Source: fixedTemperaure1
    - selecting cells using cellZone porosity
    - selected 8000 cell(s) with volume 0.00025
Selecting finite volume options model type explicitPorositySource
    Source: porosity1
    - selecting cells using cellZone porosity
    - selected 8000 cell(s) with volume 0.00025
Porosity region porosity1:
    selecting model: fixedCoeff
    creating porous zone: porosity

Starting time loop

Time = 1

smoothSolver:  Solving for Ux, Initial residual = 1, Final residual = 0.0673067, No Iterations 4
smoothSolver:  Solving for Uy, Initial residual = 1, Final residual = 0.0519002, No Iterations 4
smoothSolver:  Solving for Uz, Initial residual = 1, Final residual = 0.0564047, No Iterations 4
smoothSolver:  Solving for e, Initial residual = 0.00131339, Final residual = 1.34949e-05, No Iterations 2
GAMG:  Solving for p, Initial residual = 1, Final residual = 0.0299386, No Iterations 13
time step continuity errors : sum local = 4.0793, global = -0.620475, cumulative = -0.620475
rho max/min : 1.18944 1.18443
smoothSolver:  Solving for epsilon, Initial residual = 0.122466, Final residual = 0.000635624, No Iterations 2
smoothSolver:  Solving for k, Initial residual = 1, Final residual = 0.00685827, No Iterations 2
ExecutionTime = 0.71 s  ClockTime = 5 s

Time = 2

smoothSolver:  Solving for Ux, Initial residual = 0.967433, Final residual = 0.000229036, No Iterations 2
smoothSolver:  Solving for Uy, Initial residual = 0.861377, Final residual = 1.17449e-05, No Iterations 2
smoothSolver:  Solving for Uz, Initial residual = 0.588437, Final residual = 0.0127911, No Iterations 2
smoothSolver:  Solving for e, Initial residual = 0.0124121, Final residual = 0.00031846, No Iterations 1
GAMG:  Solving for p, Initial residual = 0.00195416, Final residual = 7.35922e-05, No Iterations 8
time step continuity errors : sum local = 12.6114, global = -0.750395, cumulative = -1.37087
rho max/min : 1.19255 1.18342
smoothSolver:  Solving for epsilon, Initial residual = 0.105693, Final residual = 0.00433939, No Iterations 2
smoothSolver:  Solving for k, Initial residual = 0.267469, Final residual = 0.01554, No Iterations 2
ExecutionTime = 0.84 s  ClockTime = 6 s

....

Time = 638

smoothSolver:  Solving for Ux, Initial residual = 3.11051e-05, Final residual = 2.34665e-08, No Iterations 2
smoothSolver:  Solving for Uy, Initial residual = 2.09825e-05, Final residual = 2.05803e-09, No Iterations 2
smoothSolver:  Solving for Uz, Initial residual = 9.98546e-05, Final residual = 1.59158e-07, No Iterations 2
smoothSolver:  Solving for e, Initial residual = 9.79188e-07, Final residual = 9.79188e-07, No Iterations 0
GAMG:  Solving for p, Initial residual = 1.94056e-05, Final residual = 5.11031e-07, No Iterations 2
time step continuity errors : sum local = 0.000131686, global = -1.12234e-05, cumulative = -14.6754
rho max/min : 1.21745 0.992999
smoothSolver:  Solving for epsilon, Initial residual = 5.37878e-06, Final residual = 2.62444e-07, No Iterations 2
smoothSolver:  Solving for k, Initial residual = 3.62234e-05, Final residual = 2.64564e-06, No Iterations 2
ExecutionTime = 82.36 s  ClockTime = 88 s


SIMPLE solution converged in 638 iterations

End
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