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rhoSimpleFoam angledDuctExplicitFixedCoeff tutorial fails in parallel |
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February 16, 2016, 02:13 |
rhoSimpleFoam angledDuctExplicitFixedCoeff tutorial fails in parallel
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#1 |
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Hello,
I tried to launch in parallel the tutorial tutorials/compressible/rhoSimpleFoam/angledDuctExplicitFixedCoeff using OpenFOAM-2.3.0 and OpenFOAM-2.4.0 and in both tests I get the following error: Code:
/*---------------------------------------------------------------------------*\ | ========= | | | \\ / F ield | OpenFOAM: The Open Source CFD Toolbox | | \\ / O peration | Version: 2.3.0 | | \\ / A nd | Web: www.OpenFOAM.org | | \\/ M anipulation | | \*---------------------------------------------------------------------------*/ Build : 2.3.0 Exec : rhoSimpleFoam -parallel Date : Feb 16 2016 Time : 14:51:09 Host : "localhost.localdomain" PID : 15539 Case : /opt/OpenFOAM-2.3.0/tutorials/compressible/rhoSimpleFoam/angledDuctExplicitFixedCoeff nProcs : 2 Slaves : 1("localhost.localdomain.15541") Pstream initialized with: floatTransfer : 0 nProcsSimpleSum : 0 commsType : nonBlocking polling iterations : 0 sigFpe : Enabling floating point exception trapping (FOAM_SIGFPE). fileModificationChecking : Monitoring run-time modified files using timeStampMaster allowSystemOperations : Disallowing user-supplied system call operations // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * // Create time Create mesh for time = 0 SIMPLE: convergence criteria field p tolerance 0.01 field U tolerance 0.0001 field e tolerance 0.001 field "(k|epsilon|omega)" tolerance 0.001 Reading thermophysical properties Selecting thermodynamics package { type hePsiThermo; mixture pureMixture; transport sutherland; thermo hConst; equationOfState perfectGas; specie specie; energy sensibleInternalEnergy; } } [0] [1] #0 Foam::error::printStack(Foam::Ostream&)#0 Foam::error::printStack(Foam::Ostream&) in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [0] #1 Foam::sigFpe::sigHandler(int) in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [1] #1 Foam::sigFpe::sigHandler(int) in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [0] #2 in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [1] #2 [0] at sigaction.c:0 [0] #3 Foam::heThermo<Foam::psiThermo, Foam::pureMixture<Foam::sutherlandTransport<Foam::species::thermo<Foam::hConstThermo<Foam::perfectGas<Foam::specie> >, Foam::sensibleInternalEnergy> > > >::he(Foam::Field<double> const&, Foam::Field<double> const&, int) const[1] at sigaction.c:0 [1] #3 Foam::heThermo<Foam::psiThermo, Foam::pureMixture<Foam::sutherlandTransport<Foam::species::thermo<Foam::hConstThermo<Foam::perfectGas<Foam::specie> >, Foam::sensibleInternalEnergy> > > >::he(Foam::Field<double> const&, Foam::Field<double> const&, int) const in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so" [0] #4 Foam::heThermo<Foam::psiThermo, Foam::pureMixture<Foam::sutherlandTransport<Foam::species::thermo<Foam::hConstThermo<Foam::perfectGas<Foam::specie> >, Foam::sensibleInternalEnergy> > > >::init() in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so" [0] #5 Foam::heThermo<Foam::psiThermo, Foam::pureMixture<Foam::sutherlandTransport<Foam::species::thermo<Foam::hConstThermo<Foam::perfectGas<Foam::specie> >, Foam::sensibleInternalEnergy> > > >::heThermo(Foam::fvMesh const&, Foam::word const&) in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so" [1] #4 Foam::heThermo<Foam::psiThermo, Foam::pureMixture<Foam::sutherlandTransport<Foam::species::thermo<Foam::hConstThermo<Foam::perfectGas<Foam::specie> >, Foam::sensibleInternalEnergy> > > >::init() in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so" [0] #6 Foam::hePsiThermo<Foam::psiThermo, Foam::pureMixture<Foam::sutherlandTransport<Foam::species::thermo<Foam::hConstThermo<Foam::perfectGas<Foam::specie> >, Foam::sensibleInternalEnergy> > > >::hePsiThermo(Foam::fvMesh const&, Foam::word const&) in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so" [1] #5 Foam::heThermo<Foam::psiThermo, Foam::pureMixture<Foam::sutherlandTransport<Foam::species::thermo<Foam::hConstThermo<Foam::perfectGas<Foam::specie> >, Foam::sensibleInternalEnergy> > > >::heThermo(Foam::fvMesh const&, Foam::word const&) in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so" [0] #7 Foam::psiThermo::addfvMeshConstructorToTable<Foam::hePsiThermo<Foam::psiThermo, Foam::pureMixture<Foam::sutherlandTransport<Foam::species::thermo<Foam::hConstThermo<Foam::perfectGas<Foam::specie> >, Foam::sensibleInternalEnergy> > > > >::New(Foam::fvMesh const&, Foam::word const&) in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so" [0] #8 Foam::autoPtr<Foam::psiThermo> Foam::basicThermo::New<Foam::psiThermo>(Foam::fvMesh const&, Foam::word const&) in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so" [1] #6 Foam::hePsiThermo<Foam::psiThermo, Foam::pureMixture<Foam::sutherlandTransport<Foam::species::thermo<Foam::hConstThermo<Foam::perfectGas<Foam::specie> >, Foam::sensibleInternalEnergy> > > >::hePsiThermo(Foam::fvMesh const&, Foam::word const&) in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so" [0] #9 Foam::psiThermo::New(Foam::fvMesh const&, Foam::word const&) in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so" [1] #7 Foam::psiThermo::addfvMeshConstructorToTable<Foam::hePsiThermo<Foam::psiThermo, Foam::pureMixture<Foam::sutherlandTransport<Foam::species::thermo<Foam::hConstThermo<Foam::perfectGas<Foam::specie> >, Foam::sensibleInternalEnergy> > > > >::New(Foam::fvMesh const&, Foam::word const&) in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so" [0] #10 in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so" [1] #8 Foam::autoPtr<Foam::psiThermo> Foam::basicThermo::New<Foam::psiThermo>(Foam::fvMesh const&, Foam::word const&) in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so" [1] #9 Foam::psiThermo::New(Foam::fvMesh const&, Foam::word const&) in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so" [1] #10 [0] in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/bin/rhoSimpleFoam" [0] #11 __libc_start_main in "/lib64/libc.so.6" [0] #12 [0] in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/bin/rhoSimpleFoam" [lnx6:15539] *** Process received signal *** [lnx6:15539] Signal: Floating point exception (8) [lnx6:15539] Signal code: (-6) [lnx6:15539] Failing at address: 0x7e600003cb3 [lnx6:15539] [ 0] /lib64/libc.so.6() [0x3ce8e326a0] [lnx6:15539] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x3ce8e32625] [lnx6:15539] [ 2] /lib64/libc.so.6() [0x3ce8e326a0] [lnx6:15539] [ 3] /opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so(_ZNK4Foam8heThermoINS_9psiThermoENS_11pureMixtureINS_19sutherlandTransportINS_7species6thermoINS_12hConstThermoINS_10perfectGasINS_6specieEEEEENS_22sensibleInternalEnergyEEEEEEEE2heERKNS_5FieldIdEESJ_i+0x169) [0x7fc0cdf74d09] [lnx6:15539] [ 4] /opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so(_ZN4Foam8heThermoINS_9psiThermoENS_11pureMixtureINS_19sutherlandTransportINS_7species6thermoINS_12hConstThermoINS_10perfectGasINS_6specieEEEEENS_22sensibleInternalEnergyEEEEEEEE4initEv+0x34a) [0x7fc0cdf8431a] [lnx6:15539] [ 5] /opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so(_ZN4Foam8heThermoINS_9psiThermoENS_11pureMixtureINS_19sutherlandTransportINS_7species6thermoINS_12hConstThermoINS_10perfectGasINS_6specieEEEEENS_22sensibleInternalEnergyEEEEEEEEC2ERKNS_6fvMeshERKNS_4wordE+0x15d) [0x7fc0cdf8899d] [lnx6:15539] [ 6] /opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so(_ZN4Foam11hePsiThermoINS_9psiThermoENS_11pureMixtureINS_19sutherlandTransportINS_7species6thermoINS_12hConstThermoINS_10perfectGasINS_6specieEEEEENS_22sensibleInternalEnergyEEEEEEEEC2ERKNS_6fvMeshERKNS_4wordE+0x16) [0x7fc0cdf89d16] [lnx6:15539] [ 7] /opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so(_ZN4Foam9psiThermo27addfvMeshConstructorToTableINS_11hePsiThermoIS0_NS_11pureMixtureINS_19sutherlandTransportINS_7species6thermoINS_12hConstThermoINS_10perfectGasINS_6specieEEEEENS_22sensibleInternalEnergyEEEEEEEEEE3NewERKNS_6fvMeshERKNS_4wordE+0x3c) [0x7fc0cdf89e8c] [lnx6:15539] [ 8] /opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so(_ZN4Foam11basicThermo3NewINS_9psiThermoEEENS_7autoPtrIT_EERKNS_6fvMeshERKNS_4wordE+0xec) [0x7fc0cdf70c3c] [lnx6:15539] [ 9] /opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so(_ZN4Foam9psiThermo3NewERKNS_6fvMeshERKNS_4wordE+0x9) [0x7fc0cdf6ed59] [lnx6:15539] [10] rhoSimpleFoam() [0x463911] [lnx6:15539] [11] /lib64/libc.so.6(__libc_start_main+0xfd) [0x3ce8e1ed5d] [lnx6:15539] [12] rhoSimpleFoam() [0x427045] [lnx6:15539] *** End of error message *** [1] in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/bin/rhoSimpleFoam" [1] #11 __libc_start_main in "/lib64/libc.so.6" [1] #12 [1] in "/opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/bin/rhoSimpleFoam" [lnx6:15541] *** Process received signal *** [lnx6:15541] Signal: Floating point exception (8) [lnx6:15541] Signal code: (-6) [lnx6:15541] Failing at address: 0x7e600003cb5 [lnx6:15541] [ 0] /lib64/libc.so.6() [0x3ce8e326a0] [lnx6:15541] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x3ce8e32625] [lnx6:15541] [ 2] /lib64/libc.so.6() [0x3ce8e326a0] [lnx6:15541] [ 3] /opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so(_ZNK4Foam8heThermoINS_9psiThermoENS_11pureMixtureINS_19sutherlandTransportINS_7species6thermoINS_12hConstThermoINS_10perfectGasINS_6specieEEEEENS_22sensibleInternalEnergyEEEEEEEE2heERKNS_5FieldIdEESJ_i+0x169) [0x7fe04e637d09] [lnx6:15541] [ 4] /opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so(_ZN4Foam8heThermoINS_9psiThermoENS_11pureMixtureINS_19sutherlandTransportINS_7species6thermoINS_12hConstThermoINS_10perfectGasINS_6specieEEEEENS_22sensibleInternalEnergyEEEEEEEE4initEv+0x34a) [0x7fe04e64731a] [lnx6:15541] [ 5] /opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so(_ZN4Foam8heThermoINS_9psiThermoENS_11pureMixtureINS_19sutherlandTransportINS_7species6thermoINS_12hConstThermoINS_10perfectGasINS_6specieEEEEENS_22sensibleInternalEnergyEEEEEEEEC2ERKNS_6fvMeshERKNS_4wordE+0x15d) [0x7fe04e64b99d] [lnx6:15541] [ 6] /opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so(_ZN4Foam11hePsiThermoINS_9psiThermoENS_11pureMixtureINS_19sutherlandTransportINS_7species6thermoINS_12hConstThermoINS_10perfectGasINS_6specieEEEEENS_22sensibleInternalEnergyEEEEEEEEC2ERKNS_6fvMeshERKNS_4wordE+0x16) [0x7fe04e64cd16] [lnx6:15541] [ 7] /opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so(_ZN4Foam9psiThermo27addfvMeshConstructorToTableINS_11hePsiThermoIS0_NS_11pureMixtureINS_19sutherlandTransportINS_7species6thermoINS_12hConstThermoINS_10perfectGasINS_6specieEEEEENS_22sensibleInternalEnergyEEEEEEEEEE3NewERKNS_6fvMeshERKNS_4wordE+0x3c) [0x7fe04e64ce8c] [lnx6:15541] [ 8] /opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so(_ZN4Foam11basicThermo3NewINS_9psiThermoEEENS_7autoPtrIT_EERKNS_6fvMeshERKNS_4wordE+0xec) [0x7fe04e633c3c] [lnx6:15541] [ 9] /opt/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/libfluidThermophysicalModels.so(_ZN4Foam9psiThermo3NewERKNS_6fvMeshERKNS_4wordE+0x9) [0x7fe04e631d59] [lnx6:15541] [10] rhoSimpleFoam() [0x463911] [lnx6:15541] [11] /lib64/libc.so.6(__libc_start_main+0xfd) [0x3ce8e1ed5d] [lnx6:15541] [12] rhoSimpleFoam() [0x427045] [lnx6:15541] *** End of error message *** -------------------------------------------------------------------------- mpirun noticed that process rank 1 with PID 15541 on node localhost.localdomain exited on signal 8 (Floating point exception). -------------------------------------------------------------------------- Thank you Al |
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February 22, 2016, 20:47 |
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#2 |
Member
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additional note :
the error disappears if you launch the tutorial in parallel using http://www.openfoam.com/version-v3.0+/ Code:
/volume31/data/hp140187/k02596/OpenFOAM Running rhoSimpleFoam in parallel on /volume31/data/hp140187/k02596/angledDuctExplicitFixedCoeff using 2 processes /*---------------------------------------------------------------------------*\ | ========= | | | \\ / F ield | OpenFOAM: The Open Source CFD Toolbox | | \\ / O peration | Version: plus | | \\ / A nd | Web: www.OpenFOAM.com | | \\/ M anipulation | | \*---------------------------------------------------------------------------*/ Build : plus Exec : rhoSimpleFoam -parallel Date : Feb 23 2016 Time : 08:56:05 Host : "k42-008" PID : 13135 Case : /volume31/data/hp140187/k02596/angledDuctExplicitFixedCoeff nProcs : 2 Slaves : 1("k42-008.13137") Pstream initialized with: floatTransfer : 0 nProcsSimpleSum : 0 commsType : nonBlocking polling iterations : 0 sigFpe : Enabling floating point exception trapping (FOAM_SIGFPE). fileModificationChecking : Monitoring run-time modified files using timeStampMaster allowSystemOperations : Allowing user-supplied system call operations // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * // Create time Create mesh for time = 0 SIMPLE: convergence criteria field p tolerance 0.01 field U tolerance 0.0001 field e tolerance 0.001 field "(k|epsilon|omega)" tolerance 0.001 Reading thermophysical properties Selecting thermodynamics package { type hePsiThermo; mixture pureMixture; transport sutherland; thermo hConst; equationOfState perfectGas; specie specie; energy sensibleInternalEnergy; } Reading field U Reading/calculating face flux field phi Creating turbulence model Selecting RAS turbulence model kEpsilon kEpsilonCoeffs { Cmu 0.09; C1 1.44; C2 1.92; C3 -0.33; sigmak 1; sigmaEps 1.3; } No MRF models present Creating finite volume options from "constant/fvOptions" Selecting finite volume options model type fixedTemperatureConstraint Source: fixedTemperaure1 - selecting cells using cellZone porosity - selected 8000 cell(s) with volume 0.00025 Selecting finite volume options model type explicitPorositySource Source: porosity1 - selecting cells using cellZone porosity - selected 8000 cell(s) with volume 0.00025 Porosity region porosity1: selecting model: fixedCoeff creating porous zone: porosity Starting time loop Time = 1 smoothSolver: Solving for Ux, Initial residual = 1, Final residual = 0.0673067, No Iterations 4 smoothSolver: Solving for Uy, Initial residual = 1, Final residual = 0.0519002, No Iterations 4 smoothSolver: Solving for Uz, Initial residual = 1, Final residual = 0.0564047, No Iterations 4 smoothSolver: Solving for e, Initial residual = 0.00131339, Final residual = 1.34949e-05, No Iterations 2 GAMG: Solving for p, Initial residual = 1, Final residual = 0.0299386, No Iterations 13 time step continuity errors : sum local = 4.0793, global = -0.620475, cumulative = -0.620475 rho max/min : 1.18944 1.18443 smoothSolver: Solving for epsilon, Initial residual = 0.122466, Final residual = 0.000635624, No Iterations 2 smoothSolver: Solving for k, Initial residual = 1, Final residual = 0.00685827, No Iterations 2 ExecutionTime = 0.71 s ClockTime = 5 s Time = 2 smoothSolver: Solving for Ux, Initial residual = 0.967433, Final residual = 0.000229036, No Iterations 2 smoothSolver: Solving for Uy, Initial residual = 0.861377, Final residual = 1.17449e-05, No Iterations 2 smoothSolver: Solving for Uz, Initial residual = 0.588437, Final residual = 0.0127911, No Iterations 2 smoothSolver: Solving for e, Initial residual = 0.0124121, Final residual = 0.00031846, No Iterations 1 GAMG: Solving for p, Initial residual = 0.00195416, Final residual = 7.35922e-05, No Iterations 8 time step continuity errors : sum local = 12.6114, global = -0.750395, cumulative = -1.37087 rho max/min : 1.19255 1.18342 smoothSolver: Solving for epsilon, Initial residual = 0.105693, Final residual = 0.00433939, No Iterations 2 smoothSolver: Solving for k, Initial residual = 0.267469, Final residual = 0.01554, No Iterations 2 ExecutionTime = 0.84 s ClockTime = 6 s .... Time = 638 smoothSolver: Solving for Ux, Initial residual = 3.11051e-05, Final residual = 2.34665e-08, No Iterations 2 smoothSolver: Solving for Uy, Initial residual = 2.09825e-05, Final residual = 2.05803e-09, No Iterations 2 smoothSolver: Solving for Uz, Initial residual = 9.98546e-05, Final residual = 1.59158e-07, No Iterations 2 smoothSolver: Solving for e, Initial residual = 9.79188e-07, Final residual = 9.79188e-07, No Iterations 0 GAMG: Solving for p, Initial residual = 1.94056e-05, Final residual = 5.11031e-07, No Iterations 2 time step continuity errors : sum local = 0.000131686, global = -1.12234e-05, cumulative = -14.6754 rho max/min : 1.21745 0.992999 smoothSolver: Solving for epsilon, Initial residual = 5.37878e-06, Final residual = 2.62444e-07, No Iterations 2 smoothSolver: Solving for k, Initial residual = 3.62234e-05, Final residual = 2.64564e-06, No Iterations 2 ExecutionTime = 82.36 s ClockTime = 88 s SIMPLE solution converged in 638 iterations End |
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