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Error when running through Slurm

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Old   April 18, 2019, 09:17
Default Error when running through Slurm
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Sita Drost
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Hi all,


I'm using OpenFOAM-5.x on a Scientific Linux cluster. Everything works fine, I can run simulations no problem, but when I try running a job through Slurm, I get this error:


Code:
/opt/OpenFOAM/OpenFOAM-5.x/etc/config.sh/bash_completion: line 6658: `_rm~all_': not a valid identifier
I noticed that this error has been reported as a bug, and fixed in both OpenFOAM-5.x and OpenFOAM-dev (https://bugs.openfoam.org/view.php?id=2823). Does anyone have any idea why it still pops up when using Slurm, and how to fix this?


Many thanks!
Sita


P.S. For now I've removed the _rm~all_ bit from bash_completion, which rids me of the error, but I'm not sure whether this will get me into trouble at some later point

Last edited by sita; April 18, 2019 at 10:13. Reason: Added a P.S.
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Old   April 25, 2019, 08:43
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Bruno Santos
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Quick answer: It looks like your OpenFOAM 5.x installation isn't based on the most recent commits, because the bug report you mentioned is implying that it was fixed in this commit: https://github.com/OpenFOAM/OpenFOAM...a32d2a2deca208 - in which, yes, the "rm~all" script was simply removed, along with the associated auto-completion entry.
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Old   April 25, 2019, 12:49
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Thanks! To be honest, I don't know what commit that OpenFOAM-5.x install was based on, as I didn't install that one myself. But it looks like I can safely do without this script, great.
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Old   April 25, 2019, 14:55
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The help argument with any OpenFOAM application should give the build with version and commit that was used to build things, e.g.:
Code:
blockMesh -help | grep Build
With luck you get something like this:
Code:
Build: 5.x-68e8507efb72
but if it was downloaded as a ZIP package, you will only get something like this:
Code:
Build: 5.x
It should also appear on the header of the runs, e.g.:
Code:
/*---------------------------------------------------------------------------*\
| =========                 |                                                 |
| \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox           |
|  \\    /   O peration     | Version:  5.x                                   |
|   \\  /    A nd           | Web:      www.OpenFOAM.org                      |
|    \\/     M anipulation  |                                                 |
\*---------------------------------------------------------------------------*/
Build  : 5.x-68e8507efb72
Exec   : blockMesh
Date   : Apr 25 2019
Time   : 18:55:30
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Old   April 25, 2019, 15:51
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Cool, never really noticed that before, I'll give it a try.
Thanks!
Sita
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