| Jelle Lagerweij |
July 1, 2022 07:44 |
Issues with OpenFOAM in parallel computing
Dear cfd friends,
I am a master student that just started his internship. I have used Ansys before and coded my own 2D FVM in python, but my temporary employer wants to use OpenFOAM. So I am learning something new. To make everything work, I created a clean ubuntu install and added Paraview, OpenFOAM and Bender to it. I also executed the following command:
Code:
sudo apt-get -y install openmpi-bin
to make sure that my install would execute multicore applications correctly.
After some single core tutorials, I encountered the depthCharge3D case. I think that I executed all basic commands correctly, in order:
Code:
mpirun -np 4 compressibleInterFoam -parallel
I also checked if my core count matches that in the decomposeParDict file,
but I still get the following error message:
Code:
--> FOAM FATAL ERROR:
bool IPstream::init(int& argc, char**& argv) : attempt to run parallel on 1 processor
From function static bool Foam::UPstream::init(int&, char**&, bool)
in file UPstream.C at line 112.
--> FOAM FATAL ERROR:
bool IPstream::init(int& argc, char**& argv) : attempt to run parallel on 1 processor
From function static bool Foam::UPstream::init(int&, char**&, bool)
in file UPstream.C at line 112.
FOAM aborting
--> FOAM FATAL ERROR:
bool IPstream::init(int& argc, char**& argv) : attempt to run parallel on 1 processor
From function static bool Foam::UPstream::init(int&, char**&, bool)
in file UPstream.C at line 112.
FOAM aborting
--> FOAM FATAL ERROR:
bool IPstream::init(int& argc, char**& argv) : attempt to run parallel on 1 processor
From function static bool Foam::UPstream::init(int&, char**&, bool)
in file UPstream.C at line 112.
FOAM aborting
FOAM aborting
#0 #0 #0 Foam::error::printStack(Foam::Ostream&)#0 Foam::error::printStack(Foam::Ostream&)Foam::error::printStack(Foam::Ostream&)Foam::error::printStack(Foam::Ostream&) at ??:?
at ??:?
at ??:?
at ??:?
#1 #1 Foam::error::abort()Foam::error::abort()#1 #1 Foam::error::abort()Foam::error::abort() at ??:?
#2 Foam::UPstream::init(int&, char**&, bool) at ??:?
#2 Foam::UPstream::init(int&, char**&, bool) at ??:?
#2 Foam::UPstream::init(int&, char**&, bool) at ??:?
#2 Foam::UPstream::init(int&, char**&, bool) at ??:?
at ??:?
at ??:?
at ??:?
#3 Foam::argList::argList(int&, char**&, bool, bool, bool)#3 #3 Foam::argList::argList(int&, char**&, bool, bool, bool)#3 Foam::argList::argList(int&, char**&, bool, bool, bool)Foam::argList::argList(int&, char**&, bool, bool, bool) at ??:?
#4 at ??:?
#4 at ??:?
#4 at ??:?
#4 ???? in in ""/opt/openfoam9/opt/openfoam9/platform in /platforms/linux64GccDPInt3s/linux64GccDPInt32Opt/bin/2Opt/bin/compressicompressibleInterFoa"/opt/openfoam9/platforms/linux64GccbleInterFoam"
m"
DPInt32Opt/bin/compressibleInterFoam"
in #5 ?#"/opt/ope5 ?nfoam9/platforms/linu#5 ?x64GccDPInt32Opt/bin/compressibleInterFoam"
#5 ? in "/lib/x86_64-linux-gnu/libc.so.6"
in "/lib/x86_64-linux-gnu/libc.so.6"
#6 #6 __libc_start_main__libc_start_main in "/lib/x in 86_64-linux-gnu/lib"/lib/x86_64-c.so.6"
linux-gnu/libc.so.6"
#6#6 __libc_start_main__libc_start_main in "/lib/x86_64-linux-gnu/libc.so.6"
#7 in "/lib/x86_6 in "/lib/x86_64-linux-gnu/libc.so.6"
4-linux-gnu/libc.so.6"
#7 #7 in "/lib/x86_64-linux-gnu/libc.so.6"
#7 ???? in "/opt/openfoam9/platforms/linux64GccDPInt32Opt/bin/compressibleInterFoam"
[jelle-IdeaPad-5-Pro-16ACH6:07394] *** Process received signal ***
[jelle-IdeaPad-5-Pro-16ACH6:07394] Signal: Aborted (6)
[jelle-IdeaPad-5-Pro-16ACH6:07394] Signal code: (-6)
[jelle-IdeaPad-5-Pro-16ACH6:07394] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7fd627260520]
[jelle-IdeaPad-5-Pro-16ACH6:07394] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7fd6272b4a7c]
[jelle-IdeaPad-5-Pro-16ACH6:07394] [ 2] in "/opt/openfoam9/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7fd627260476]
[jelle-IdeaPad-5-Pro-16ACH6:07394] [ 3] /platforms/linux64GccDPInt32Opt in /bin/compressibleI"/opt/openfoanterFoam"
m9/platforms/li/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7fd6272467f3]
[jelle-IdeaPad-5-Pro-16ACH6:07394] [ 4] nux64GccDPInt32Opt/bin/compressibleInterFoam"
[jelle-IdeaPad-5-Pro-16ACH6:07395] *** Process received signal ***
[jelle-IdeaPad-5-Pro-16ACH6:07395] Signal: Aborted (6)
[jelle-IdeaPad-5-Pro-16ACH6:07395] Signal code: (-6)
[jelle-IdeaPad-5-Pro-16ACH6:07392] *** Process received signal ***
[jelle-IdeaPad-5-Pro-16ACH6:07392] Signal: Aborted (6)
[jelle-IdeaPad-5-Pro-16ACH6:07392] Signal code: (-6)
[jelle-IdeaPad-5-Pro-16ACH6:07395] [ 0] [jelle-IdeaPad-5-Pro-16ACH6:07392] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f98eb713520]
[jelle-IdeaPad-5-Pro-16ACH6:07395] [ 1] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f88d7b2e520]
[jelle-IdeaPad-5-Pro-16ACH6:07392] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f98eb767a7c]
[jelle-IdeaPad-5-Pro-16ACH6:07395] [ 2] in "/opt/openfoam9/pla/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f98eb713476]
[jelle-IdeaPad-5-Pro-16ACH6:07395] [ 3] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f88d7b82a7c]
[jelle-IdeaPad-5-Pro-16ACH6:07392] [ 2] tforms/linux64GccDPInt32Opt/bin/compressibleInt/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f98eb6f97f3]
[jelle-IdeaPad-5-Pro-16ACH6:07395] [ 4] erFoam"
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f88d7b2e476]
[jelle-IdeaPad-5-Pro-16ACH6:07392] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f88d7b147f3]
[jelle-IdeaPad-5-Pro-16ACH6:07392] [ 4] [jelle-IdeaPad-5-Pro-16ACH6:07393] *** Process received signal ***
[jelle-IdeaPad-5-Pro-16ACH6:07393] Signal: Aborted (6)
[jelle-IdeaPad-5-Pro-16ACH6:07393] Signal code: (-6)
[jelle-IdeaPad-5-Pro-16ACH6:07393] [ 0] /opt/openfoam9/platforms/linux64GccDPInt32Opt/lib/libOpenFOAM.so(_ZN4Foam5error5abortEv+0x20d)[0x7fd627a5243d]
[jelle-IdeaPad-5-Pro-16ACH6:07394] [ 5] /opt/openfoam9/platforms/linux64GccDPInt32Opt/lib/openmpi-system/libPstream.so(_ZN4Foam8UPstream4initERiRPPcb+0x3e9)[0x7fd627214d19]
[jelle-IdeaPad-5-Pro-16ACH6:07394] [ 6] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7ff84935f520]
[jelle-IdeaPad-5-Pro-16ACH6:07393] [ 1] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7ff8493b3a7c]
[jelle-IdeaPad-5-Pro-16ACH6:07393] [ 2] /lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7ff84935f476]
[jelle-IdeaPad-5-Pro-16ACH6:07393] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7ff8493457f3]
[jelle-IdeaPad-5-Pro-16ACH6:07393] [ 4] /opt/openfoam9/platforms/linux64GccDPInt32Opt/lib/libOpenFOAM.so(_ZN4Foam5error5abortEv+0x20d)[0x7f98ebf0543d]
[jelle-IdeaPad-5-Pro-16ACH6:07395] [ 5] /opt/openfoam9/platforms/linux64GccDPInt32Opt/lib/openmpi-system/libPstream.so(_ZN4Foam8UPstream4initERiRPPcb+0x3e9)[0x7f98eb6c7d19]
[jelle-IdeaPad-5-Pro-16ACH6:07395] [ 6] /opt/openfoam9/platforms/linux64GccDPInt32Opt/lib/libOpenFOAM.so(_ZN4Foam5error5abortEv+0x20d)[0x7f88d832043d]
[jelle-IdeaPad-5-Pro-16ACH6:07392] [ 5] /opt/openfoam9/platforms/linux64GccDPInt32Opt/lib/openmpi-system/libPstream.so(_ZN4Foam8UPstream4initERiRPPcb+0x3e9)[0x7f88d7ae2d19]
[jelle-IdeaPad-5-Pro-16ACH6:07392] [ 6] /opt/openfoam9/platforms/linux64GccDPInt32Opt/lib/libOpenFOAM.so(_ZN4Foam7argListC1ERiRPPcbbb+0x7a8)[0x7fd627a6dbf8]
[jelle-IdeaPad-5-Pro-16ACH6:07394] [ 7] compressibleInterFoam(+0x4a744)[0x55bd83793744]
[jelle-IdeaPad-5-Pro-16ACH6:07394] [ 8] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7fd627247d90]
[jelle-IdeaPad-5-Pro-16ACH6:07394] [ 9] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7fd627247e40]
[jelle-IdeaPad-5-Pro-16ACH6:07394] [10] /opt/openfoam9/platforms/linux64GccDPInt32Opt/lib/libOpenFOAM.so(_ZN4Foam7argListC1ERiRPPcbbb+0x7a8)[0x7f98ebf20bf8]
[jelle-IdeaPad-5-Pro-16ACH6:07395] [ 7] /opt/openfoam9/platforms/linux64GccDPInt32Opt/lib/libOpenFOAM.so(_ZN4Foam7argListC1ERiRPPcbbb+0x7a8)[0x7f88d833bbf8]
[jelle-IdeaPad-5-Pro-16ACH6:07392] compressibleInterFoam(+0x5d7e5)[0x55bd837a67e5]
[jelle-IdeaPad-5-Pro-16ACH6:07394] *** End of error message ***
compressibleInterFoam(+0x4a744)[0x557f23976744]
[jelle-IdeaPad-5-Pro-16ACH6:07395] [ 8] [ 7] compressibleInterFoam(+0x4a744)[0x561c01670744]
[jelle-IdeaPad-5-Pro-16ACH6:07392] [ 8] /opt/openfoam9/platforms/linux64GccDPInt32Opt/lib/libOpenFOAM.so(_ZN4Foam5error5abortEv+0x20d)[0x7ff849b5143d]
[jelle-IdeaPad-5-Pro-16ACH6:07393] [ 5] /opt/openfoam9/platforms/linux64GccDPInt32Opt/lib/openmpi-system/libPstream.so(_ZN4Foam8UPstream4initERiRPPcb+0x3e9)[0x7ff849313d19]
[jelle-IdeaPad-5-Pro-16ACH6:07393] [ 6] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f98eb6fad90]
[jelle-IdeaPad-5-Pro-16ACH6:07395] [ 9] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f98eb6fae40]
[jelle-IdeaPad-5-Pro-16ACH6:07395] [10] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f88d7b15d90]
[jelle-IdeaPad-5-Pro-16ACH6:07392] [ 9] compressibleInterFoam(+0x5d7e5)[0x557f239897e5]
[jelle-IdeaPad-5-Pro-16ACH6:07395] *** End of error message ***
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f88d7b15e40]
[jelle-IdeaPad-5-Pro-16ACH6:07392] [10] compressibleInterFoam(+0x5d7e5)[0x561c016837e5]
[jelle-IdeaPad-5-Pro-16ACH6:07392] *** End of error message ***
/opt/openfoam9/platforms/linux64GccDPInt32Opt/lib/libOpenFOAM.so(_ZN4Foam7argListC1ERiRPPcbbb+0x7a8)[0x7ff849b6cbf8]
[jelle-IdeaPad-5-Pro-16ACH6:07393] [ 7] compressibleInterFoam(+0x4a744)[0x55a3eb964744]
[jelle-IdeaPad-5-Pro-16ACH6:07393] [ 8] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7ff849346d90]
[jelle-IdeaPad-5-Pro-16ACH6:07393] [ 9] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7ff849346e40]
[jelle-IdeaPad-5-Pro-16ACH6:07393] [10] compressibleInterFoam(+0x5d7e5)[0x55a3eb9777e5]
[jelle-IdeaPad-5-Pro-16ACH6:07393] *** End of error message ***
===================================================================================
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= PID 7392 RUNNING AT jelle-IdeaPad-5-Pro-16ACH6
= EXIT CODE: 134
= CLEANING UP REMAINING PROCESSES
= YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
===================================================================================
YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Aborted (signal 6)
This typically refers to a problem with your application.
Please see the FAQ page for debugging suggestions
After this, I checked my mpi install again, and seems to work. I tried to find some sugestions online, but I couldn't find a solution. Does someone here have an idea what I do wrong? |
