shipman |
July 23, 2014 02:25 |
foam-extend_3.1 decompose and pyfoam warning
1 Attachment(s)
Hi to everybody,
I am using foam-extend 3.1 and ubuntu version 12.04. After installation 3.1, when i tried to decompose my case although it gives following warning it makes decomposition:
HTML Code:
Create mesh for region region0
Calculating distribution of cells
--> FOAM Warning :
From function dlLibraryTable::open(const fileName& functionLibName)
in file db/dlLibraryTable/dlLibraryTable.C at line 85
could not load libmetisDecomp.so: cannot open shared object file: No such file or directory
--> FOAM Warning :
From function decompositionMethod::loadExternalLibraries()
in file decompositionMethod/decompositionMethod.C at line 453
Loading of decomposition library libmetisDecomp.so unsuccesful. Some decomposition methods may not be available
--> FOAM Warning :
From function dlLibraryTable::open(const fileName& functionLibName)
in file db/dlLibraryTable/dlLibraryTable.C at line 85
could not load libparMetisDecomp.so: cannot open shared object file: No such file or directory
--> FOAM Warning :
From function decompositionMethod::loadExternalLibraries()
in file decompositionMethod/decompositionMethod.C at line 453
Loading of decomposition library libparMetisDecomp.so unsuccesful. Some decomposition methods may not be available
Selecting decompositionMethod simple
Finished decomposition in 0.25 s
Calculating original mesh data
Distributing cells to processors
Distributing faces to processors
Calculating processor boundary addressing
Distributing points to processors
Constructing processor meshes
Processor 0
Number of cells = 11668
Number of faces shared with processor 1 = 11850
Number of faces shared with processor 4 = 104
Number of processor patches = 2
Number of processor faces = 11954
Number of boundary faces = 11898
Processor 1
Number of cells = 20171
Number of faces shared with processor 0 = 11850
Number of faces shared with processor 2 = 1605
Number of faces shared with processor 5 = 296
Number of processor patches = 3
Number of processor faces = 13751
Number of boundary faces = 2282
Processor 2
Number of cells = 16737
Number of faces shared with processor 1 = 1605
Number of faces shared with processor 3 = 1190
Number of faces shared with processor 6 = 263
Number of faces shared with processor 5 = 22
Number of faces shared with processor 7 = 6
Number of processor patches = 5
Number of processor faces = 3086
Number of boundary faces = 6942
Processor 3
Number of cells = 16510
Number of faces shared with processor 2 = 1190
Number of faces shared with processor 7 = 348
Number of processor patches = 2
Number of processor faces = 1538
Number of boundary faces = 6888
Processor 4
Number of cells = 13049
Number of faces shared with processor 5 = 11874
Number of faces shared with processor 0 = 104
Number of faces shared with processor 8 = 155
Number of processor patches = 3
Number of processor faces = 12133
Number of boundary faces = 12051
Processor 5
Number of cells = 19115
Number of faces shared with processor 4 = 11874
Number of faces shared with processor 1 = 296
Number of faces shared with processor 6 = 1559
Number of faces shared with processor 2 = 22
Number of faces shared with processor 9 = 232
Number of faces shared with processor 8 = 50
Number of processor patches = 6
Number of processor faces = 14033
Number of boundary faces = 2193
Processor 6
Number of cells = 16566
Number of faces shared with processor 5 = 1559
Number of faces shared with processor 2 = 263
Number of faces shared with processor 7 = 1157
Number of faces shared with processor 10 = 242
Number of faces shared with processor 9 = 1
Number of faces shared with processor 11 = 3
Number of processor patches = 6
Number of processor faces = 3225
Number of boundary faces = 6844
Processor 7
Number of cells = 16356
Number of faces shared with processor 3 = 348
Number of faces shared with processor 6 = 1157
Number of faces shared with processor 2 = 6
Number of faces shared with processor 11 = 320
Number of processor patches = 4
Number of processor faces = 1831
Number of boundary faces = 6795
Processor 8
Number of cells = 24098
Number of faces shared with processor 4 = 155
Number of faces shared with processor 9 = 10882
Number of faces shared with processor 5 = 50
Number of faces shared with processor 10 = 102
Number of processor patches = 4
Number of processor faces = 11189
Number of boundary faces = 13084
Processor 9
Number of cells = 9528
Number of faces shared with processor 8 = 10882
Number of faces shared with processor 5 = 232
Number of faces shared with processor 10 = 1626
Number of faces shared with processor 6 = 1
Number of processor patches = 4
Number of processor faces = 12741
Number of boundary faces = 1943
Processor 10
Number of cells = 15511
Number of faces shared with processor 6 = 242
Number of faces shared with processor 9 = 1626
Number of faces shared with processor 11 = 1318
Number of faces shared with processor 8 = 102
Number of processor patches = 4
Number of processor faces = 3288
Number of boundary faces = 6414
Processor 11
Number of cells = 15948
Number of faces shared with processor 7 = 320
Number of faces shared with processor 10 = 1318
Number of faces shared with processor 6 = 3
Number of processor patches = 3
Number of processor faces = 1641
Number of boundary faces = 6795
Number of processor faces = 45205
Max number of processor patches = 6
Max number of faces between processors = 14033
Processor 0: field transfer
Processor 1: field transfer
Processor 2: field transfer
Processor 3: field transfer
Processor 4: field transfer
Processor 5: field transfer
Processor 6: field transfer
Processor 7: field transfer
Processor 8: field transfer
Processor 9: field transfer
Processor 10: field transfer
Processor 11: field transfer
End.
Then to check this warning i run the foamIstallation and it gives following error:
HTML Code:
Executing /home/baris/foam/foam-extend-3.1/bin/foamInstallationTest:
Checking basic setup...
-------------------------------------------------------------------------------
Shell: bash
Host: baris-desktop
OS: Linux version 3.2.0-29-generic
-------------------------------------------------------------------------------
Checking main foam-extend env variables...
-------------------------------------------------------------------------------
Environment_variable Set_to_file_or_directory Valid Crit
-------------------------------------------------------------------------------
$WM_PROJECT_INST_DIR /home/baris/foam yes yes
$WM_PROJECT_USER_DIR /home/baris/foam/baris-3.1 no no
$WM_THIRD_PARTY_DIR ...aris/foam/foam-extend-3.1/ThirdParty yes yes
-------------------------------------------------------------------------------
Checking the foam-extend env variables set on the PATH...
-------------------------------------------------------------------------------
Environment_variable Set_to_file_or_directory Valid Path Crit
-------------------------------------------------------------------------------
$WM_PROJECT_DIR /home/baris/foam/foam-extend-3.1 yes yes yes
$FOAM_APPBIN ...3.1/applications/bin/linux64GccDPOpt yes yes yes
$FOAM_SITE_APPBIN ...is/foam/site/3.1/bin/linux64GccDPOpt yes yes no
$FOAM_USER_APPBIN ...3.1/applications/bin/linux64GccDPOpt no no
$WM_DIR /home/baris/foam/foam-extend-3.1/wmake yes yes yes
-------------------------------------------------------------------------------
Checking the foam-extend env variables set on the LD_LIBRARY_PATH...
-------------------------------------------------------------------------------
Environment_variable Set_to_file_or_directory Valid Path Crit
-------------------------------------------------------------------------------
$FOAM_LIBBIN .../foam-extend-3.1/lib/linux64GccDPOpt yes yes yes
$FOAM_SITE_LIBBIN ...is/foam/site/3.1/lib/linux64GccDPOpt yes yes no
$FOAM_USER_LIBBIN ...s/foam/baris-3.1/lib/linux64GccDPOpt no no
$MPI_ARCH_PATH ...nmpi-1.6.5/platforms/linux64GccDPOpt yes yes yes
-------------------------------------------------------------------------------
Third party software
-------------------------------------------------------------------------------
Software Version Location
-------------------------------------------------------------------------------
WARNING: gcc version does not match gcc supplied with this release of foam-extend
Supplied version: 4.3.3
User version : 4.6.3
Minimum required: 4.3.1
gcc 4.6.3
WARNING: Conflicting installations:
foam-extend settings : /bin/gcc
current path : /usr/bin/gcc
CRITICAL ERROR
gzip 1.4 /bin/gzip
tar 1.26 /bin/tar
icoFoam ...am-extend-3.1/applications/bin/linux64GccDPOpt/icoFoam
-------------------------------------------------------------------------------
Summary
-------------------------------------------------------------------------------
Base configuration ok.
The foam installation contains 1 critical error(s).
Review the output for warning messages and consult
the installation guide for trouble shooting.
done.
Could someone help to me how can i correct this error?
On the other hand, when i also tried to run parallel by using pyfoam it gives attached warning, but it is going to run. I am a bit confused about it. So, also about this if someone have idea i will be appreciated.
thanks a lot.
B
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