chrisb2244 |
June 8, 2014 21:23 |
Segmentation Fault on start - pvserver using o/s rendering, remote on cluster
I have installed from source Mesa-10.1.3, QT-4.8.6, and ParaView-4.1.0, on a cluster which is accessed using password-less ssh connections. I can ssh between the nodes and that all seems to be fine.
When I start the pvserver (on the login node only, to try and simplify matters, although the same happens with the working nodes of the cluster, the connection is just a bit messier so I might be also getting that wrong), I use
Code:
$>> pvserver --use-offscreen-rendering
and get output like this:
Code:
Waiting for client...
Connection URL: cs://tombo-login3.oist.jp:11111
Accepting connection(s): tombo-login3.oist.jp:11111
When I, on my local workstation, start paraview, and connect using the gui to the tombo-login3.oist.jp:11111, the local client complains about losing a connection, and a broken pipe, whilst the server prints:
Code:
Client connected.
[tombo-login3:04882] *** Process received signal ***
[tombo-login3:04882] Signal: Segmentation fault (11)
[tombo-login3:04882] Signal code: Address not mapped (1)
[tombo-login3:04882] Failing at address: (nil)
[tombo-login3:04882] [ 0] /lib64/libpthread.so.0() [0x3d2440f710]
[tombo-login3:04882] [ 1] /lib64/libc.so.6() [0x3d23c8ad96]
[tombo-login3:04882] [ 2] /lib64/libc.so.6() [0x3d23c75a10]
[tombo-login3:04882] [ 3] /lib64/libc.so.6(vsscanf+0x65) [0x3d23c699b5]
[tombo-login3:04882] [ 4] /lib64/libc.so.6(_IO_sscanf+0x88) [0x3d23c63a28]
[tombo-login3:04882] [ 5] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkRenderingOpenGL-pv4.1.so.1(_ZN25vtkOpenGLExtensionManager20ReadOpenGLExtensionsEv+0x160) [0x2b8fe10bc950]
[tombo-login3:04882] [ 6] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkRenderingOpenGL-pv4.1.so.1(_ZN25vtkOpenGLExtensionManager6UpdateEv+0x30) [0x2b8fe10bbe00]
[tombo-login3:04882] [ 7] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkRenderingOpenGL-pv4.1.so.1(_ZN25vtkOpenGLExtensionManager18ExtensionSupportedEPKc+0x17) [0x2b8fe10bbb47]
[tombo-login3:04882] [ 8] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkRenderingOpenGL-pv4.1.so.1(_ZN21vtkOpenGLRenderWindow17OpenGLInitContextEv+0x4a) [0x2b8fe10f6a1a]
[tombo-login3:04882] [ 9] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkRenderingOpenGL-pv4.1.so.1(_ZN21vtkOpenGLRenderWindow10OpenGLInitEv+0xd) [0x2b8fe10f41ed]
[tombo-login3:04882] [10] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkRenderingOpenGL-pv4.1.so.1(_ZN23vtkOSOpenGLRenderWindow5StartEv+0xd) [0x2b8fe117059d]
[tombo-login3:04882] [11] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkRenderingCore-pv4.1.so.1(_ZN15vtkRenderWindow14DoStereoRenderEv+0x16) [0x2b8fd07931d6]
[tombo-login3:04882] [12] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkRenderingCore-pv4.1.so.1(_ZN15vtkRenderWindow10DoFDRenderEv+0x36b) [0x2b8fd079375b]
[tombo-login3:04882] [13] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkRenderingCore-pv4.1.so.1(_ZN15vtkRenderWindow10DoAARenderEv+0x461) [0x2b8fd0794811]
[tombo-login3:04882] [14] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkRenderingCore-pv4.1.so.1(_ZN15vtkRenderWindow6RenderEv+0xcd) [0x2b8fd079388d]
[tombo-login3:04882] [15] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkPVClientServerCoreRendering-pv4.1.so.1(_ZN15vtkPVRenderView6RenderEbb+0x20e) [0x2b8fda632ebe]
[tombo-login3:04882] [16] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkPVClientServerCoreRendering-pv4.1.so.1(_ZN15vtkPVRenderView11StillRenderEv+0x3c) [0x2b8fda6320fc]
[tombo-login3:04882] [17] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkPVServerManagerApplication-pv4.1.so.1(_Z22vtkPVRenderViewCommandP26vtkClientServerInterpreterP13vtkObjectBasePKcRK21vtkClientServerStreamRS5_Pv+0x140f) [0x2b8fcf1c114f]
[tombo-login3:04882] [18] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkClientServer-pv4.1.so.1(_ZN26vtkClientServerInterpreter19CallCommandFunctionEPKcP13vtkObjectBaseS1_RK21vtkClientServerStreamRS4_+0x14c) [0x2b8fd296e72c]
[tombo-login3:04882] [19] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkClientServer-pv4.1.so.1(_ZN26vtkClientServerInterpreter20ProcessCommandInvokeERK21vtkClientServerStreami+0x192) [0x2b8fd2972192]
[tombo-login3:04882] [20] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkClientServer-pv4.1.so.1(_ZN26vtkClientServerInterpreter17ProcessOneMessageERK21vtkClientServerStreami+0x28e) [0x2b8fd29717ee]
[tombo-login3:04882] [21] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkClientServer-pv4.1.so.1(_ZN26vtkClientServerInterpreter13ProcessStreamERK21vtkClientServerStream+0x1d) [0x2b8fd29718dd]
[tombo-login3:04882] [22] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkPVServerImplementationCore-pv4.1.so.1(_ZN16vtkPVSessionCore21ExecuteStreamInternalERK21vtkClientServerStreamb+0x10c) [0x2b8fcfc9420c]
[tombo-login3:04882] [23] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkPVServerImplementationCore-pv4.1.so.1(_ZN16vtkPVSessionCore13ExecuteStreamEjRK21vtkClientServerStreamb+0x4c) [0x2b8fcfc90b7c]
[tombo-login3:04882] [24] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkPVServerImplementationCore-pv4.1.so.1(_ZN16vtkPVSessionBase13ExecuteStreamEjRK21vtkClientServerStreamb+0x42) [0x2b8fcfc8e6c2]
[tombo-login3:04882] [25] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkPVServerImplementationCore-pv4.1.so.1(_ZN18vtkPVSessionServer24OnClientServerMessageRMIEPvi+0x143) [0x2b8fcfc97533]
[tombo-login3:04882] [26] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkParallelCore-pv4.1.so.1(_ZN25vtkMultiProcessController10ProcessRMIEiPvii+0x168) [0x2b8fd3513108]
[tombo-login3:04882] [27] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkParallelCore-pv4.1.so.1(_ZN25vtkMultiProcessController11ProcessRMIsEii+0x101) [0x2b8fd35135b1]
[tombo-login3:04882] [28] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkPVClientServerCoreCore-pv4.1.so.1(_ZN26vtkTCPNetworkAccessManager21ProcessEventsInternalEmb+0x35e) [0x2b8fcff887be]
[tombo-login3:04882] [29] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/pvserver(main+0x21b) [0x401c4b]
[tombo-login3:04882] *** End of error message ***
Segmentation fault
My PATH and LD_LIBRARY_PATH are:
Code:
christian-butcher@tombo-login3:~$ echo $PATH
/home/c/christian-butcher/Tombo3_SL6.5/bin:/home/c/christian-butcher/Tombo3_SL6.5/QT-4.8.6/bin:/home/c/christian-butcher/OpenFOAM/christian-butcher-2.3.0/platforms/linux64GccDPOpt/bin:/home/c/christian-butcher/OpenFOAM/site/2.3.0/platforms/linux64GccDPOpt/bin:/home/c/christian-butcher/OpenFOAM/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/bin:/home/c/christian-butcher/OpenFOAM/OpenFOAM-2.3.0/bin:/home/c/christian-butcher/OpenFOAM/OpenFOAM-2.3.0/wmake:/opt/mpi/gnu/openmpi-1.6.3/bin:/gridware/sge/bin/lx24-amd64:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin
christian-butcher@tombo-login3:~$ echo $LD_LIBRARY_PATH
/home/c/christian-butcher/Tombo3_SL6.5/lib:/home/c/christian-butcher/Tombo3_SL6.5/QT-4.8.6/lib/:/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/:/home/c/christian-butcher/OpenFOAM/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/openmpi-system:/home/c/christian-butcher/OpenFOAM/ThirdParty-2.3.0/platforms/linux64GccDPOpt/lib/openmpi-system:/opt/mpi/gnu/openmpi-1.6.3/lib:/home/c/christian-butcher/OpenFOAM/christian-butcher-2.3.0/platforms/linux64GccDPOpt/lib:/home/c/christian-butcher/OpenFOAM/site/2.3.0/platforms/linux64GccDPOpt/lib:/home/c/christian-butcher/OpenFOAM/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib:/home/c/christian-butcher/OpenFOAM/ThirdParty-2.3.0/platforms/linux64GccDPOpt/lib:/home/c/christian-butcher/OpenFOAM/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/dummy
I'm unsure where I've gone wrong (although I suspect it might be in the compilation of either QT or Mesa).
If anyone could advise, I'd very much appreciate it.
If any further information is needed, please let me know.
Christian
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