| zweihuehner |
November 21, 2021 20:22 |
Problems compiling DIVEMesh
When trying to compile DIVEMesh with "make j 8" there seems to be a namespace issue in driver.h with 'data'. Thus the compilation can not be completed.
I followed the steps from the installation videos:
Quote:
(
sudo apt-get install build-essential gfortran unzip make wget openmpi-bin libopenmpi-dev
mkdir libraries
cd libraries
git clone https://github.com/hypre-space/hypre.git
cd hypre/src
./configure --prefix=/usr/local/hypre
make all
sudo make install
sudo printf '\n#export Path for hypre (part of reef3D) \nPATH=/usr/local/hypre/lib:usr/local/hypre/include:$PATH' >> ~/.bashrc
source ~/.bashrc
)
cd
git clone https://github.com/REEF3D/DIVEMesh.git
cd DIVEMesh
make -j 8
|
What am I doing wrong?
**System information:**
- REEF3D 21.10
- DIVEMesh 21.10
- OpenMPI 4.1.o
- Hypre 2.23.0
- OS Ubuntu
Here is the output from the compilation:
Quote:
In file included from src/driver.cpp:23:
src/driver.h:59:9: error: reference to ‘data’ is ambiguous
59 | data *pdata;
| ^~~~
In file included from /usr/include/c++/11/string:54,
from /usr/include/c++/11/bits/locale_classes.h:40,
from /usr/include/c++/11/bits/ios_base.h:41,
from /usr/include/c++/11/ios:42,
from /usr/include/c++/11/ostream:38,
from /usr/include/c++/11/iostream:39,
from src/driver.h:23,
from src/driver.cpp:23:
/usr/include/c++/11/bits/range_access.h:319:5: note: candidates are: ‘template<class _Tp> constexpr const _Tp* std::data(std::initializer_list<_Tp>)’
319 | data(initializer_list<_Tp> __il) noexcept
| ^~~~
/usr/include/c++/11/bits/range_access.h:310:5: note: ‘template<class _Tp, long unsigned int _Nm> constexpr _Tp* std::data(_Tp (&)[_Nm])’
310 | data(_Tp (&__array)[_Nm]) noexcept
| ^~~~
/usr/include/c++/11/bits/range_access.h:300:5: note: ‘template<class _Container> constexpr decltype (__cont.data()) std::data(const _Container&)’
300 | data(const _Container& __cont) noexcept(noexcept(__cont.data()))
| ^~~~
/usr/include/c++/11/bits/range_access.h:290:5: note: ‘template<class _Container> constexpr decltype (__cont.data()) std::data(_Container&)’
290 | data(_Container& __cont) noexcept(noexcept(__cont.data()))
| ^~~~
In file included from src/driver.h:25,
from src/driver.cpp:23:
src/driver_declarations.h:36:7: note: ‘class data’
36 | class objects_geometry;
| ^~~~
In file included from src/driver_analytics.cpp:23:
src/driver.h:59:9: error: reference to ‘data’ is ambiguous
59 | data *pdata;
| ^~~~
In file included from /usr/include/c++/11/string:54,
from /usr/include/c++/11/bits/locale_classes.h:40,
from /usr/include/c++/11/bits/ios_base.h:41,
from /usr/include/c++/11/ios:42,
from /usr/include/c++/11/ostream:38,
from /usr/include/c++/11/iostream:39,
from src/driver.h:23,
from src/driver_analytics.cpp:23:
/usr/include/c++/11/bits/range_access.h:319:5: note: candidates are: ‘template<class _Tp> constexpr const _Tp* std::data(std::initializer_list<_Tp>)’
319 | data(initializer_list<_Tp> __il) noexcept
| ^~~~
/usr/include/c++/11/bits/range_access.h:310:5: note: ‘template<class _Tp, long unsigned int _Nm> constexpr _Tp* std::data(_Tp (&)[_Nm])’
310 | data(_Tp (&__array)[_Nm]) noexcept
| ^~~~
/usr/include/c++/11/bits/range_access.h:300:5: note: ‘template<class _Container> constexpr decltype (__cont.data()) std::data(const _Container&)’
300 | data(const _Container& __cont) noexcept(noexcept(__cont.data()))
| ^~~~
/usr/include/c++/11/bits/range_access.h:290:5: note: ‘template<class _Container> constexpr decltype (__cont.data()) std::data(_Container&)’
290 | data(_Container& __cont) noexcept(noexcept(__cont.data()))
| ^~~~
In file included from src/driver.h:25,
from src/driver_analytics.cpp:23:
src/driver_declarations.h:36:7: note: ‘class data’
36 | class objects_geometry;
| ^~~~
src/driver.cpp: In member function ‘void driver::mainloop()’:
src/driver.cpp:75:5: error: ‘pdata’ was not declared in this scope; did you mean ‘data’?
75 | pdata->start(p,a);
| ^~~~~
| data
make: [Makefile:19: build/src/driver.o] Error 1 (ignored)
make: [Makefile:19: build/src/driver_analytics.o] Error 1 (ignored)
In file included from src/main.h:25,
from src/main.cpp:23:
src/driver.h:59:9: error: reference to ‘data’ is ambiguous
59 | data *pdata;
| ^~~~
In file included from /usr/include/c++/11/string:54,
from /usr/include/c++/11/bits/locale_classes.h:40,
from /usr/include/c++/11/bits/ios_base.h:41,
from /usr/include/c++/11/ios:42,
from /usr/include/c++/11/ostream:38,
from /usr/include/c++/11/iostream:39,
from src/main.h:24,
from src/main.cpp:23:
/usr/include/c++/11/bits/range_access.h:319:5: note: candidates are: ‘template<class _Tp> constexpr const _Tp* std::data(std::initializer_list<_Tp>)’
319 | data(initializer_list<_Tp> __il) noexcept
| ^~~~
/usr/include/c++/11/bits/range_access.h:310:5: note: ‘template<class _Tp, long unsigned int _Nm> constexpr _Tp* std::data(_Tp (&)[_Nm])’
310 | data(_Tp (&__array)[_Nm]) noexcept
| ^~~~
/usr/include/c++/11/bits/range_access.h:300:5: note: ‘template<class _Container> constexpr decltype (__cont.data()) std::data(const _Container&)’
300 | data(const _Container& __cont) noexcept(noexcept(__cont.data()))
| ^~~~
/usr/include/c++/11/bits/range_access.h:290:5: note: ‘template<class _Container> constexpr decltype (__cont.data()) std::data(_Container&)’
290 | data(_Container& __cont) noexcept(noexcept(__cont.data()))
| ^~~~
In file included from src/driver.h:25,
from src/main.h:25,
from src/main.cpp:23:
src/driver_declarations.h:36:7: note: ‘class data’
36 | class objects_geometry;
| ^~~~
make: [Makefile:19: build/src/main.o] Error 1 (ignored)
In file included from src/logic.cpp:23:
src/driver.h:59:9: error: reference to ‘data’ is ambiguous
59 | data *pdata;
| ^~~~
In file included from /usr/include/c++/11/string:54,
from /usr/include/c++/11/bits/locale_classes.h:40,
from /usr/include/c++/11/bits/ios_base.h:41,
from /usr/include/c++/11/ios:42,
from /usr/include/c++/11/ostream:38,
from /usr/include/c++/11/iostream:39,
from src/driver.h:23,
from src/logic.cpp:23:
/usr/include/c++/11/bits/range_access.h:319:5: note: candidates are: ‘template<class _Tp> constexpr const _Tp* std::data(std::initializer_list<_Tp>)’
319 | data(initializer_list<_Tp> __il) noexcept
| ^~~~
/usr/include/c++/11/bits/range_access.h:310:5: note: ‘template<class _Tp, long unsigned int _Nm> constexpr _Tp* std::data(_Tp (&)[_Nm])’
310 | data(_Tp (&__array)[_Nm]) noexcept
| ^~~~
/usr/include/c++/11/bits/range_access.h:300:5: note: ‘template<class _Container> constexpr decltype (__cont.data()) std::data(const _Container&)’
300 | data(const _Container& __cont) noexcept(noexcept(__cont.data()))
| ^~~~
/usr/include/c++/11/bits/range_access.h:290:5: note: ‘template<class _Container> constexpr decltype (__cont.data()) std::data(_Container&)’
290 | data(_Container& __cont) noexcept(noexcept(__cont.data()))
| ^~~~
In file included from src/driver.h:25,
from src/logic.cpp:23:
src/driver_declarations.h:36:7: note: ‘class data’
36 | class objects_geometry;
| ^~~~
src/logic.cpp: In member function ‘void driver::logic(lexer*)’:
src/logic.cpp:59:5: error: ‘pdata’ was not declared in this scope; did you mean ‘data’?
59 |
| ^
| data
src/logic.cpp:59:17: error: expected type-specifier before ‘data’
59 |
| ^
make: [Makefile:19: build/src/logic.o] Error 1 (ignored)
/usr/bin/ld: cannot find build/src/driver_analytics.o: No such file or directory
/usr/bin/ld: cannot find build/src/driver.o: No such file or directory
/usr/bin/ld: cannot find build/src/logic.o: No such file or directory
/usr/bin/ld: cannot find build/src/main.o: No such file or directory
collect2: error: ld returned 1 exit status
make: [Makefile:24: bin/DiveMESH] Error 1 (ignored)
(base) fafs@Fafs-XPS:~/Dev/Reef3D/DIVEMesh$ ll
total 5932
drwxrwxr-x 7 fafs fafs 4096 Nov 21 22:24 ./
drwxrwxr-x 5 fafs fafs 4096 Nov 21 22:01 ../
drwxrwxr-x 2 fafs fafs 4096 Nov 21 22:24 bin/
drwxrwxr-x 3 fafs fafs 4096 Nov 21 22:24 build/
-rw-rw-r-- 1 fafs fafs 5965464 Nov 21 22:01 DIVEMesh-UserGuide.pdf
drwxrwxr-x 8 fafs fafs 4096 Nov 21 22:01 .git/
-rw-rw-r-- 1 fafs fafs 66 Nov 21 22:01 .gitattributes
drwxrwxr-x 3 fafs fafs 4096 Nov 21 22:01 .github/
-rw-rw-r-- 1 fafs fafs 235 Nov 21 22:01 .gitignore
-rw-rw-r-- 1 fafs fafs 35126 Nov 21 22:01 LICENSE
-rw-rw-r-- 1 fafs fafs 14369 Nov 21 22:24 log
-rw-rw-r-- 1 fafs fafs 909 Nov 21 22:01 Makefile
-rwxrwxr-x 1 fafs fafs 2590 Nov 21 22:01 release-notes.txt*
drwxrwxr-x 2 fafs fafs 12288 Nov 21 22:01 src/
(base) fafs@Fafs-XPS:~/Dev/Reef3D/DIVEMesh$ cat log
g++ -w -O3 -march=native -c src/baselayer.cpp -o build/src/baselayer.o
g++ -w -O3 -march=native -c src/bc.cpp -o build/src/bc.o
g++ -w -O3 -march=native -c src/bedlevel.cpp -o build/src/bedlevel.o
g++ -w -O3 -march=native -c src/box_bl.cpp -o build/src/box_bl.o
|
...
Quote:
g++ -w -O3 -march=native -o ./bin/DiveMESH build/src/baselayer.o build/src/bc.o build/src/bedlevel.o build/src/box_bl.o build/src/data.o build/src/data_inversedist.o build/src/decomp_analyse.o build/src/decomp_correction.o build/src/decomp_costfunc.o build/src/decomp_count.o build/src/decomp.o build/src/decomp_paraslice.o build/src/decomp_partition.o build/src/decomp_partition_manual.o build/src/decomp_partition_planes.o build/src/decomp_periodic.o build/src/decomp_periodic_surfco.o build/src/decomp_periodic_surf.o build/src/decomp_print.o build/src/decomp_surface.o build/src/decomp_surfco.o build/src/decomp_vtp.o build/src/dive.o build/src/driver_analytics.o build/src/driver.o build/src/field1d.o build/src/field2d.o build/src/field.o build/src/geodat.o build/src/geodat_holecheck.o build/src/geodat_multigrid_ccipol.o build/src/geodat_multigrid.o build/src/geodat_pointcheck.o build/src/geodat_print-sampled.o build/src/geodat_print-vtp.o build/src/geodat_remove_bounds.o build/src/geodat_setup_ijk.o build/src/geometry_arch.o build/src/geometry_box_array.o build/src/geometry_box.o build/src/geometry_cone_x.o build/src/geometry_cone_y.o build/src/geometry_cone_z.o build/src/geometry.o build/src/geometry_cylinder_y.o build/src/geometry_cylinder_z.o build/src/geometry_ellipsoid.o build/src/geometry_ellipsoid_semi.o build/src/geometry_ellipsoid_semi_rot.o build/src/geometry_fluvial_box_fill_segments.o build/src/geometry_fluvial_box_util.o build/src/geometry_fluvial_box_v1.o build/src/geometry_fluvial_box_v2.o build/src/geometry_hexahedron.o build/src/geometry_jacketmember_norm.o build/src/geometry_ogee-weir.o build/src/geometry_plate_x.o build/src/geometry_pyramid.o build/src/geometry_ray_cast.o build/src/geometry_ray_cast_io_x.o build/src/geometry_ray_cast_io_ycorr.o build/src/geometry_ray_cast_io_zcorr.o build/src/geometry_ray_cast_x.o build/src/geometry_ray_cast_x_gcb.o build/src/geometry_ray_cast_y.o build/src/geometry_ray_cast_z.o build/src/geometry_rotation.o build/src/geometry_semicyl_y.o build/src/geometry_sphere.o build/src/geometry_stl.o build/src/geometry_tetrahedon.o build/src/geometry_wedge.o build/src/geometry_wedge_x.o build/src/geometry_wedge_y.o build/src/geometry_wedge_z.o build/src/hdc_allocate.o build/src/hdc.o build/src/hdc_decomp.o build/src/hdc_filename_in.o build/src/hdc_filename_out.o build/src/hdc_read.o build/src/hdc_read_header.o build/src/hdc_read_mainheader.o build/src/hdc_write.o build/src/hdc_write_header.o build/src/increment.o build/src/ini.o build/src/initialize.o build/src/intfield1d.o build/src/intfield1dy.o build/src/intfield2d.o build/src/intfield.o build/src/inverse_dist.o build/src/inverse_dist_local.o build/src/inverse_dist_local_setup.o build/src/kriging.o build/src/kriging_ini.o build/src/kriging_rearrange.o build/src/kriging_semivariogram.o build/src/kriging_solve.o build/src/lexer.o build/src/lexer_createspace.o build/src/lexer_gridspacing_cellBased.o build/src/lexer_gridspacing.o build/src/lexer_gridspacing_fsf.o build/src/lexer_gridspacing_print.o build/src/lexer_pos.o build/src/logic.o build/src/main.o build/src/module_void.o build/src/print_binary.o build/src/print_bottom.o build/src/print_debug.o build/src/print_solid.o build/src/print_vtu.o build/src/read_control.o build/src/read_data.o build/src/read_geodat.o build/src/read_solid.o build/src/read_stl.o build/src/read_topo.o build/src/resize.o build/src/resize_delete.o build/src/resize_resize.o build/src/slice.o build/src/solid.o build/src/solid_fluvial_box.o build/src/surface.o build/src/surface_dir.o build/src/surface_plate.o build/src/surface_solid.o build/src/topo.o
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