[cfd951]

Hi all!

I tried installing SU2 v6. I'm able to configure with MPI. However, I run into compilation errors.

CXXLD ../bin/SU2_CFD
Undefined symbols for architecture x86_64:
"___intel_sse2_strchr", referenced from:
_cg_open in libcgns.a(libcgns_a-cgnslib.o)
_cg_set_file_type in libcgns.a(libcgns_a-cgnslib.o)
_cg_configure in libcgns.a(libcgns_a-cgnslib.o)
_cg_gopath in libcgns.a(libcgns_a-cgnslib.o)
_cgio_find_file in libcgns.a(libcgns_a-cgns_io.o)
_ADF_Get_Link_Path in libcgns.a(libcgns_a-ADF_interface.o)
_ADF_Link_Size in libcgns.a(libcgns_a-ADF_interface.o)
...
"___intel_sse2_strcspn", referenced from:
_ADF_Database_Version in libcgns.a(libcgns_a-ADF_interface.o)
_ADFI_get_current_date in libcgns.a(libcgns_a-ADF_internals.o)
_ADFI_write_modification_date in libcgns.a(libcgns_a-ADF_internals.o)
_ADFI_fill_initial_file_header in libcgns.a(libcgns_a-ADF_internals.o)
"___intel_sse2_strlen", referenced from:
_cg_open in libcgns.a(libcgns_a-cgnslib.o)
_cg_zone_write in libcgns.a(libcgns_a-cgnslib.o)
_cg_family_name_write in libcgns.a(libcgns_a-cgnslib.o)
_cg_fambc_write in libcgns.a(libcgns_a-cgnslib.o)
_cg_geo_read in libcgns.a(libcgns_a-cgnslib.o)
_cg_geo_write in libcgns.a(libcgns_a-cgnslib.o)
_cg_discrete_ptset_write in libcgns.a(libcgns_a-cgnslib.o)
...
"___intel_sse2_strncmp", referenced from:
_cgi_read_units in libcgns.a(libcgns_a-cgns_internals.o)
_cgio_open_file in libcgns.a(libcgns_a-cgns_io.o)
_cgio_find_file in libcgns.a(libcgns_a-cgns_io.o)
_cgio_check_file in libcgns.a(libcgns_a-cgns_io.o)
_ADF_Database_Valid in libcgns.a(libcgns_a-ADF_interface.o)
_ADFI_add_2_sub_node_table in libcgns.a(libcgns_a-ADF_internals.o)
_ADFI_read_file_header in libcgns.a(libcgns_a-ADF_internals.o)
...
"___intel_ssse3_strcpy", referenced from:
_cg_open in libcgns.a(libcgns_a-cgnslib.o)
_cg_base_read in libcgns.a(libcgns_a-cgnslib.o)
_cg_base_write in libcgns.a(libcgns_a-cgnslib.o)
_cg_zone_read in libcgns.a(libcgns_a-cgnslib.o)
_cg_zone_write in libcgns.a(libcgns_a-cgnslib.o)
_cg_family_read in libcgns.a(libcgns_a-cgnslib.o)
_cg_family_write in libcgns.a(libcgns_a-cgnslib.o)
...
"___intel_ssse3_strncpy", referenced from:
_cg_gopath in libcgns.a(libcgns_a-cgnslib.o)
_cgi_read_family in libcgns.a(libcgns_a-cgns_internals.o)
_cgi_read_user_data in libcgns.a(libcgns_a-cgns_internals.o)
_cgi_read_zone in libcgns.a(libcgns_a-cgns_internals.o)
_cgi_read_subregion in libcgns.a(libcgns_a-cgns_internals.o)
_cgi_read_units in libcgns.a(libcgns_a-cgns_internals.o)
_cgi_read_boco in libcgns.a(libcgns_a-cgns_internals.o)
...
"___intel_ssse3_strrchr", referenced from:
_cgio_find_file in libcgns.a(libcgns_a-cgns_io.o)
"___svml_irem4", referenced from:
_libmetis__Match_2HopAll in libmetis.a(libmetis_a-coarsen.o)
"___svml_pow2", referenced from:
_libmetis__MlevelKWayPartitioning in libmetis.a(libmetis_a-kmetis.o)
_libmetis__InitKWayPartitioning in libmetis.a(libmetis_a-kmetis.o)
"__intel_fast_memcpy", referenced from:
_cg_zone_read in libcgns.a(libcgns_a-cgnslib.o)
_cg_zone_write in libcgns.a(libcgns_a-cgnslib.o)
_cg_coord_partial_write in libcgns.a(libcgns_a-cgnslib.o)
_cg_elements_read in libcgns.a(libcgns_a-cgnslib.o)
_cg_elements_partial_read in libcgns.a(libcgns_a-cgnslib.o)
_cg_elements_partial_write in libcgns.a(libcgns_a-cgnslib.o)
_cg_parent_data_partial_write in libcgns.a(libcgns_a-cgnslib.o)
...
"__intel_fast_memset", referenced from:
_cg_elements_partial_write in libcgns.a(libcgns_a-cgnslib.o)
_cg_boco_info in libcgns.a(libcgns_a-cgnslib.o)
_cg_bc_area_write in libcgns.a(libcgns_a-cgnslib.o)
_cg_delete_node in libcgns.a(libcgns_a-cgnslib.o)
_cgi_get_zcoorGC in libcgns.a(libcgns_a-cgns_internals.o)
_ADF_Put_Dimension_Information in libcgns.a(libcgns_a-ADF_interface.o)
_ADF_Read_All_Data in libcgns.a(libcgns_a-ADF_interface.o)
...
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[1]: *** [../bin/SU2_CFD] Error 1
make: *** [all-recursive] Error 1


=============================
System details
OS: macOS 10.12

mpicc: icc (ICC) 18.0.1 20171018
Copyright (C) 1985-2017 Intel Corporation. All rights reserved.

mpicxx:Apple LLVM version 9.0.0 (clang-900.0.39.2)
Target: x86_64-apple-darwin16.7.0
Thread model: posix
InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin
==============================


How do I resolve the above error?

Best Regards!

[gouravjee]

Hello everyone ,
I am trying to write discretized form of enthalpy in openfoam and here are some constant values which i have written in code and compiled successfully.
const faceList & ff = mesh.faces();
const pointField & pp = mesh.points();
forAll ( mesh.C(), celli)
{
const cell & cc = mesh.cells()[celli];
labelList pLabels(cc.labels(ff));
pointField pLocal(pLabels.size(), vector::zero);
forAll (pLabels, pointi) pLocal[pointi] = pp[pLabels[pointi]];
scalar xDim = Foam::max(pLocal & vector(1,0,0)) - Foam::min(pLocal & vector(1,0,0));
scalar yDim = Foam::max(pLocal & vector(0,1,0)) - Foam::min(pLocal & vector(0,1,0));
scalar zDim = Foam::max(pLocal & vector(0,0,1)) - Foam::min(pLocal & vector(0,0,1));


dimensionedScalar aE = ks*yDim*zDim/xDim;

dimensionedScalar aW = ks*yDim*zDim/xDim;
dimensionedScalar aN = ks*xDim*zDim/yDim;
dimensionedScalar aS = ks*xDim*zDim/yDim;
dimensionedScalar aF = ks*yDim*xDim/zDim;
dimensionedScalar aB = ks*yDim*xDim/zDim;
dimensionedScalar aPo = rho*Cps*xDim*yDim*zDim/runTime.deltaTValue() ; ///p.oldTime();
dimensionedScalar Ap = rho*xDim*yDim*zDim/runTime.deltaTValue() ; ///p.oldTime();
dimensionedScalar aP = aW+aE+aN+aS+aB+aF+Ap+aPo;




But the problem that i face using them in my solver's .C file i get an error like this::


pFoam.C: In function ‘int main(int, char**)’:
pFoam.C:67:49: error: ‘aP’ was not declared in this scope
- fvm::laplacian(DT, T) + (lamda*aP/Ap)*fvm::ddt(T)-(lamda*aP/Ap
^
pFoam.C:67:52: error: ‘Ap’ was not declared in this scope
- fvm::laplacian(DT, T) + (lamda*aP/Ap)*fvm::ddt(T)-(lamda*aP/Ap
^
/opt/openfoam4/wmake/rules/General/transform:8: recipe for target 'Make/linux64GccDPInt32Opt/pFoam.o' failed
make: *** [Make/linux64GccDPInt32Opt/pFoam.o] Error 1


can anyone tell me what am i doing wrong?

[fpalacios]

Intel could be tricky could you please try with the Mac compiler. This is working for me

Apple LLVM version 9.0.0 (clang-900.0.38)
Target: x86_64-apple-darwin17.4.0

Best,
Francisco

[gouravjee]

Originally Posted by fpalacios

Intel could be tricky could you please try with the Mac compiler. This is working for me

Apple LLVM version 9.0.0 (clang-900.0.38)
Target: x86_64-apple-darwin17.4.0

Best,
Francisco

i dont have mac at this time
so could you please suggest some other way to it ?

[talbring]

Originally Posted by gouravjee

i dont have mac at this time
so could you please suggest some other way to it ?

The answer of fpalacios is referring to the first post. Please remember that you are in SU2 forum. You should visit the OpenFOAM forum for your question.

[cfd951]

Originally Posted by fpalacios

Intel could be tricky could you please try with the Mac compiler. This is working for me

Apple LLVM version 9.0.0 (clang-900.0.38)
Target: x86_64-apple-darwin17.4.0

Best,
Francisco

Dear Francisco,

Switching to Apple LLVM clang helped! Thanks for a quick reply.