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tomp1993 March 9, 2018 06:18
long error when using make-install SU2_AD.
 
long error when using make-install SU2_AD.
I have updated gcc to v4.9, openmpi to v3.0; called them as modules on my cluster, reinstalled codi and medi and used preconfigure.py with no problems.
I then run make install but am faced with the following (very long) error message:

Code:
make[2]: Entering directory `/users/mep15tpp/SU2-6.0.0/SU2-master/SU2_AD/Common/lib'
  CXX      ../src/libSU2_AD_a-config_structure.o
In file included from ../../../externals/codi/include/codi.hpp:34:0,
                from ../../../Common/lib/../src/../include/././datatypes/codi_reverse_structure.hpp:39,
                from ../../../Common/lib/../src/../include/././datatype_structure.hpp:51,
                from ../../../Common/lib/../src/../include/./mpi_structure.hpp:46,
                from ../../../Common/lib/../src/../include/config_structure.hpp:41,
                from ../../../Common/lib/../src/config_structure.cpp:38:
../../../externals/codi/include/tapes/forwardEvaluation.hpp:59:33: error: expected initializer before ‘:’ token
In file included from ../../../externals/codi/include/tapes/jacobiTape.hpp:38:0,
                from ../../../externals/codi/include/codi.hpp:35,
                from ../../../Common/lib/../src/../include/././datatypes/codi_reverse_structure.hpp:39,
                from ../../../Common/lib/../src/../include/././datatype_structure.hpp:51,
                from ../../../Common/lib/../src/../include/./mpi_structure.hpp:46,
                from ../../../Common/lib/../src/../include/config_structure.hpp:41,
                from ../../../Common/lib/../src/config_structure.cpp:38:
../../../externals/codi/include/tapes/chunk.hpp:169:23: error: expected initializer before ‘:’ token
../../../externals/codi/include/tapes/chunk.hpp:288:23: error: expected initializer before ‘:’ token
../../../externals/codi/include/tapes/chunk.hpp:425:23: error: expected initializer before ‘:’ token
../../../externals/codi/include/tapes/chunk.hpp:584:23: error: expected initializer before ‘:’ token
In file included from ../../../externals/codi/include/codi.hpp:35:0,
                from ../../../Common/lib/../src/../include/././datatypes/codi_reverse_structure.hpp:39,
                from ../../../Common/lib/../src/../include/././datatype_structure.hpp:51,
                from ../../../Common/lib/../src/../include/./mpi_structure.hpp:46,
                from ../../../Common/lib/../src/../include/config_structure.hpp:41,
                from ../../../Common/lib/../src/config_structure.cpp:38:
../../../externals/codi/include/tapes/jacobiTape.hpp:70:13: error: ‘codi::Chunk1’ is not a template
../../../externals/codi/include/tapes/jacobiTape.hpp:75:13: error: ‘codi::Chunk2’ is not a template
../../../externals/codi/include/tapes/jacobiTape.hpp:80:13: error: ‘codi::Chunk2’ is not a template
../../../externals/codi/include/tapes/jacobiTape.hpp:113:13: error: ‘codi::Chunk1’ is not a template
../../../externals/codi/include/tapes/jacobiTape.hpp:118:13: error: ‘codi::Chunk2’ is not a template
../../../externals/codi/include/tapes/jacobiTape.hpp:123:13: error: ‘codi::Chunk2’ is not a template
../../../externals/codi/include/tapes/jacobiTape.hpp:152:26: error: expected initializer before ‘:’ token
In file included from ../../../externals/codi/include/codi.hpp:36:0,
                from ../../../Common/lib/../src/../include/././datatypes/codi_reverse_structure.hpp:39,
                from ../../../Common/lib/../src/../include/././datatype_structure.hpp:51,
                from ../../../Common/lib/../src/../include/./mpi_structure.hpp:46,
                from ../../../Common/lib/../src/../include/config_structure.hpp:41,
                from ../../../Common/lib/../src/config_structure.cpp:38:
../../../externals/codi/include/tapes/jacobiIndexTape.hpp:69:13: error: ‘codi::Chunk2’ is not a template
../../../externals/codi/include/tapes/jacobiIndexTape.hpp:74:13: error: ‘codi::Chunk2’ is not a template
../../../externals/codi/include/tapes/jacobiIndexTape.hpp:79:13: error: ‘codi::Chunk2’ is not a template
../../../externals/codi/include/tapes/jacobiIndexTape.hpp:112:13: error: ‘codi::Chunk2’ is not a template
../../../externals/codi/include/tapes/jacobiIndexTape.hpp:117:13: error: ‘codi::Chunk2’ is not a template
../../../externals/codi/include/tapes/jacobiIndexTape.hpp:122:13: error: ‘codi::Chunk2’ is not a template
In file included from ../../../externals/codi/include/tapes/jacobiTape.hpp:42:0,
                from ../../../externals/codi/include/codi.hpp:35,
                from ../../../Common/lib/../src/../include/././datatypes/codi_reverse_structure.hpp:39,
                from ../../../Common/lib/../src/../include/././datatype_structure.hpp:51,
                from ../../../Common/lib/../src/../include/./mpi_structure.hpp:46,
                from ../../../Common/lib/../src/../include/config_structure.hpp:41,
                from ../../../Common/lib/../src/config_structure.cpp:38:
../../../externals/codi/include/tapes/singleChunkVector.hpp: In instantiation of ‘codi::SingleChunkVector<codi::Chunk2, codi::EmptyChunkVector>’:
../../../externals/codi/include/tapes/singleChunkVector.hpp:72:45:  instantiated from ‘codi::SingleChunkVector<codi::Chunk2, codi::SingleChunkVector<codi::Chunk2, codi::EmptyChunkVector> >’
../../../externals/codi/include/tapes/jacobiIndexTape.hpp:122:58:  instantiated from here
../../../externals/codi/include/tapes/singleChunkVector.hpp:113:15: error: ‘codi::SingleChunkVector<ChunkData, NestedVector>::chunk’ has incomplete type
../../../externals/codi/include/tapes/chunk.hpp:288:10: error: forward declaration of ‘struct codi::Chunk2’
../../../externals/codi/include/tapes/singleChunkVector.hpp: In instantiation of ‘codi::SingleChunkVector<codi::Chunk2, codi::SingleChunkVector<codi::Chunk2, codi::EmptyChunkVector> >’:
../../../externals/codi/include/tapes/jacobiIndexTape.hpp:122:58:  instantiated from here
../../../externals/codi/include/tapes/singleChunkVector.hpp:113:15: error: ‘codi::SingleChunkVector<ChunkData, NestedVector>::chunk’ has incomplete type
../../../externals/codi/include/tapes/chunk.hpp:288:10: error: forward declaration of ‘struct codi::Chunk2’
../../../externals/codi/include/tapes/singleChunkVector.hpp: In instantiation of ‘codi::SingleChunkVector<codi::Chunk2, codi::SingleChunkVector<codi::Chunk2, codi::SingleChunkVector<codi::Chunk2, codi::EmptyChunkVector> > >’:
../../../externals/codi/include/tapes/jacobiIndexTape.hpp:127:44:  instantiated from here
../../../externals/codi/include/tapes/singleChunkVector.hpp:113:15: error: ‘codi::SingleChunkVector<ChunkData, NestedVector>::chunk’ has incomplete type
../../../externals/codi/include/tapes/chunk.hpp:288:10: error: forward declaration of ‘struct codi::Chunk2’
In file included from ../../../externals/codi/include/codi.hpp:36:0,
                from ../../../Common/lib/../src/../include/././datatypes/codi_reverse_structure.hpp:39,
                from ../../../Common/lib/../src/../include/././datatype_structure.hpp:51,
                from ../../../Common/lib/../src/../include/./mpi_structure.hpp:46,
                from ../../../Common/lib/../src/../include/config_structure.hpp:41,
                from ../../../Common/lib/../src/config_structure.cpp:38:
../../../externals/codi/include/tapes/jacobiIndexTape.hpp:156:31: error: expected initializer before ‘:’ token
In file included from ../../../externals/codi/include/codi.hpp:36:0,
                from ../../../Common/lib/../src/../include/././datatypes/codi_reverse_structure.hpp:39,
                from ../../../Common/lib/../src/../include/././datatype_structure.hpp:51,
                from ../../../Common/lib/../src/../include/./mpi_structure.hpp:46,
                from ../../../Common/lib/../src/../include/config_structure.hpp:41,
                from ../../../Common/lib/../src/config_structure.cpp:38:
../../../externals/codi/include/tapes/jacobiIndexTape.hpp:482:55: error: expected initializer before ‘<’ token
In file included from ../../../externals/codi/include/codi.hpp:37:0,
                from ../../../Common/lib/../src/../include/././datatypes/codi_reverse_structure.hpp:39,
                from ../../../Common/lib/../src/../include/././datatype_structure.hpp:51,
                from ../../../Common/lib/../src/../include/./mpi_structure.hpp:46,
                from ../../../Common/lib/../src/../include/config_structure.hpp:41,
                from ../../../Common/lib/../src/config_structure.cpp:38:
../../../externals/codi/include/tapes/primalValueTape.hpp:75:13: error: ‘codi::Chunk2’ is not a template
../../../externals/codi/include/tapes/primalValueTape.hpp:80:13: error: ‘codi::Chunk1’ is not a template
../../../externals/codi/include/tapes/primalValueTape.hpp:85:13: error: ‘codi::Chunk1’ is not a template
../../../externals/codi/include/tapes/primalValueTape.hpp:90:13: error: ‘codi::Chunk2’ is not a template
../../../externals/codi/include/tapes/primalValueTape.hpp:131:13: error: ‘codi::Chunk2’ is not a template
../../../externals/codi/include/tapes/primalValueTape.hpp:136:13: error: ‘codi::Chunk1’ is not a template
../../../externals/codi/include/tapes/primalValueTape.hpp:141:13: error: ‘codi::Chunk1’ is not a template
../../../externals/codi/include/tapes/primalValueTape.hpp:146:13: error: ‘codi::Chunk2’ is not a template
In file included from ../../../externals/codi/include/codi.hpp:38:0,
                from ../../../Common/lib/../src/../include/././datatypes/codi_reverse_structure.hpp:39,
                from ../../../Common/lib/../src/../include/././datatype_structure.hpp:51,
                from ../../../Common/lib/../src/../include/./mpi_structure.hpp:46,
                from ../../../Common/lib/../src/../include/config_structure.hpp:41,
                from ../../../Common/lib/../src/config_structure.cpp:38:
../../../externals/codi/include/tapes/primalValueIndexTape.hpp:76:13: error: ‘codi::Chunk4’ is not a template
../../../externals/codi/include/tapes/primalValueIndexTape.hpp:81:13: error: ‘codi::Chunk1’ is not a template
../../../externals/codi/include/tapes/primalValueIndexTape.hpp:86:13: error: ‘codi::Chunk1’ is not a template
../../../externals/codi/include/tapes/primalValueIndexTape.hpp:91:13: error: ‘codi::Chunk2’ is not a template
../../../externals/codi/include/tapes/primalValueIndexTape.hpp:133:13: error: ‘codi::Chunk4’ is not a template
../../../externals/codi/include/tapes/primalValueIndexTape.hpp:138:13: error: ‘codi::Chunk1’ is not a template
../../../externals/codi/include/tapes/primalValueIndexTape.hpp:143:13: error: ‘codi::Chunk1’ is not a template
../../../externals/codi/include/tapes/primalValueIndexTape.hpp:148:13: error: ‘codi::Chunk2’ is not a template
In file included from ../../../externals/codi/include/tapes/jacobiTape.hpp:42:0,
                from ../../../externals/codi/include/codi.hpp:35,
                from ../../../Common/lib/../src/../include/././datatypes/codi_reverse_structure.hpp:39,
                from ../../../Common/lib/../src/../include/././datatype_structure.hpp:51,
                from ../../../Common/lib/../src/../include/./mpi_structure.hpp:46,
                from ../../../Common/lib/../src/../include/config_structure.hpp:41,
                from ../../../Common/lib/../src/config_structure.cpp:38:
../../../externals/codi/include/tapes/singleChunkVector.hpp: In instantiation of ‘codi::SingleChunkVector<codi::Chunk4, codi::EmptyChunkVector>’:
../../../externals/codi/include/tapes/singleChunkVector.hpp:72:45:  recursively instantiated from ‘codi::SingleChunkVector<codi::Chunk1, codi::SingleChunkVector<codi::Chunk4, codi::EmptyChunkVector> >’
../../../externals/codi/include/tapes/singleChunkVector.hpp:72:45:  instantiated from ‘codi::SingleChunkVector<codi::Chunk1, codi::SingleChunkVector<codi::Chunk1, codi::SingleChunkVector<codi::Chunk4, codi::EmptyChunkVector> > >’
../../../externals/codi/include/tapes/primalValueIndexTape.hpp:148:65:  instantiated from here
../../../externals/codi/include/tapes/singleChunkVector.hpp:113:15: error: ‘codi::SingleChunkVector<ChunkData, NestedVector>::chunk’ has incomplete type
../../../externals/codi/include/tapes/chunk.hpp:584:10: error: forward declaration of ‘struct codi::Chunk4’
../../../externals/codi/include/tapes/singleChunkVector.hpp: In instantiation of ‘codi::SingleChunkVector<codi::Chunk1, codi::SingleChunkVector<codi::Chunk4, codi::EmptyChunkVector> >’:
../../../externals/codi/include/tapes/singleChunkVector.hpp:72:45:  instantiated from ‘codi::SingleChunkVector<codi::Chunk1, codi::SingleChunkVector<codi::Chunk1, codi::SingleChunkVector<codi::Chunk4, codi::EmptyChunkVector> > >’
../../../externals/codi/include/tapes/primalValueIndexTape.hpp:148:65:  instantiated from here
../../../externals/codi/include/tapes/singleChunkVector.hpp:113:15: error: ‘codi::SingleChunkVector<ChunkData, NestedVector>::chunk’ has incomplete type
../../../externals/codi/include/tapes/chunk.hpp:169:10: error: forward declaration of ‘struct codi::Chunk1’
../../../externals/codi/include/tapes/singleChunkVector.hpp: In instantiation of ‘codi::SingleChunkVector<codi::Chunk1, codi::SingleChunkVector<codi::Chunk1, codi::SingleChunkVector<codi::Chunk4, codi::EmptyChunkVector> > >’:
../../../externals/codi/include/tapes/primalValueIndexTape.hpp:148:65:  instantiated from here
../../../externals/codi/include/tapes/singleChunkVector.hpp:113:15: error: ‘codi::SingleChunkVector<ChunkData, NestedVector>::chunk’ has incomplete type
../../../externals/codi/include/tapes/chunk.hpp:169:10: error: forward declaration of ‘struct codi::Chunk1’
../../../externals/codi/include/tapes/singleChunkVector.hpp: In instantiation of ‘codi::SingleChunkVector<codi::Chunk2, codi::SingleChunkVector<codi::Chunk1, codi::SingleChunkVector<codi::Chunk1, codi::SingleChunkVector<codi::Chunk4, codi::EmptyChunkVector> > > >’:
../../../externals/codi/include/tapes/primalValueIndexTape.hpp:153:44:  instantiated from here
../../../externals/codi/include/tapes/singleChunkVector.hpp:113:15: error: ‘codi::SingleChunkVector<ChunkData, NestedVector>::chunk’ has incomplete type
../../../externals/codi/include/tapes/chunk.hpp:288:10: error: forward declaration of ‘struct codi::Chunk2’
In file included from ../../../Common/lib/../src/../include/././datatypes/codi_reverse_structure.hpp:39:0,
                from ../../../Common/lib/../src/../include/././datatype_structure.hpp:51,
                from ../../../Common/lib/../src/../include/./mpi_structure.hpp:46,
                from ../../../Common/lib/../src/../include/config_structure.hpp:41,
                from ../../../Common/lib/../src/config_structure.cpp:38:
TBC

tomp1993 March 9, 2018 06:19
continued
 
Continued error message:
Code:
../../../externals/codi/include/codi.hpp:72:22: error: ‘codi::ForwardEvaluation’ is not a template
../../../externals/codi/include/codi.hpp:84:3: error: expected unqualified-id before ‘using’
In file included from ../../../Common/lib/../src/../include/././datatypes/codi_reverse_structure.hpp:39:0,
                from ../../../Common/lib/../src/../include/././datatype_structure.hpp:51,
                from ../../../Common/lib/../src/../include/./mpi_structure.hpp:46,
                from ../../../Common/lib/../src/../include/config_structure.hpp:41,
                from ../../../Common/lib/../src/config_structure.cpp:38:
../../../externals/codi/include/codi.hpp:95:3: error: expected unqualified-id before ‘using’
../../../externals/codi/include/codi.hpp:127:22: error: ‘codi::JacobiTape’ is not a template
../../../externals/codi/include/codi.hpp:139:3: error: expected unqualified-id before ‘using’
../../../externals/codi/include/codi.hpp:151:3: error: expected unqualified-id before ‘using’
../../../externals/codi/include/codi.hpp:189:22: error: ‘codi::JacobiTape’ is not a template
../../../externals/codi/include/codi.hpp:200:3: error: expected unqualified-id before ‘using’
../../../externals/codi/include/codi.hpp:211:22: error: ‘codi::JacobiIndexTape’ is not a template
../../../externals/codi/include/codi.hpp:223:3: error: expected unqualified-id before ‘using’
../../../externals/codi/include/codi.hpp:234:3: error: expected unqualified-id before ‘using’
../../../externals/codi/include/codi.hpp:241:22: error: ‘codi::JacobiIndexTape’ is not a template
../../../externals/codi/include/codi.hpp:252:3: error: expected unqualified-id before ‘using’
../../../externals/codi/include/codi.hpp:274:3: error: expected unqualified-id before ‘using’
../../../externals/codi/include/codi.hpp:285:3: error: expected unqualified-id before ‘using’
../../../externals/codi/include/codi.hpp:303:3: error: expected unqualified-id before ‘using’
../../../externals/codi/include/codi.hpp:322:3: error: expected unqualified-id before ‘using’
../../../externals/codi/include/codi.hpp:333:3: error: expected unqualified-id before ‘using’
../../../externals/codi/include/codi.hpp:351:3: error: expected unqualified-id before ‘using’
In file included from ../../../externals/codi/include/codi.hpp:31:0,
                from ../../../Common/lib/../src/../include/././datatypes/codi_reverse_structure.hpp:39,
                from ../../../Common/lib/../src/../include/././datatype_structure.hpp:51,
                from ../../../Common/lib/../src/../include/./mpi_structure.hpp:46,
                from ../../../Common/lib/../src/../include/config_structure.hpp:41,
                from ../../../Common/lib/../src/config_structure.cpp:38:
../../../externals/codi/include/activeReal.hpp: In instantiation of ‘codi::ActiveReal<codi::JacobiTape>’:
../../../Common/lib/../src/../include/././ad_structure.inl:45:20:  instantiated from here
../../../externals/codi/include/activeReal.hpp:74:9: error: invalid use of incomplete type ‘struct codi::JacobiTape’
../../../externals/codi/include/tapes/jacobiTape.hpp:152:9: error: forward declaration of ‘struct codi::JacobiTape’
../../../externals/codi/include/activeReal.hpp:80:33: error: invalid use of incomplete type ‘struct codi::JacobiTape’
../../../externals/codi/include/tapes/jacobiTape.hpp:152:9: error: forward declaration of ‘struct codi::JacobiTape’
../../../externals/codi/include/activeReal.hpp:103:52: error: invalid use of incomplete type ‘struct codi::JacobiTape’
../../../externals/codi/include/tapes/jacobiTape.hpp:152:9: error: forward declaration of ‘struct codi::JacobiTape’
../../../externals/codi/include/activeReal.hpp:108:41: error: invalid use of incomplete type ‘struct codi::JacobiTape’
../../../externals/codi/include/tapes/jacobiTape.hpp:152:9: error: forward declaration of ‘struct codi::JacobiTape’
../../../externals/codi/include/activeReal.hpp:113:42: error: invalid use of incomplete type ‘struct codi::JacobiTape’
../../../externals/codi/include/tapes/jacobiTape.hpp:152:9: error: forward declaration of ‘struct codi::JacobiTape’
../../../externals/codi/include/activeReal.hpp:171:17: error: invalid use of incomplete type ‘struct codi::JacobiTape’
../../../externals/codi/include/tapes/jacobiTape.hpp:152:9: error: forward declaration of ‘struct codi::JacobiTape’
../../../externals/codi/include/activeReal.hpp:397:35: error: invalid use of incomplete type ‘struct codi::JacobiTape’
../../../externals/codi/include/tapes/jacobiTape.hpp:152:9: error: forward declaration of ‘struct codi::JacobiTape’
../../../externals/codi/include/activeReal.hpp:427:35: error: invalid use of incomplete type ‘struct codi::JacobiTape’
../../../externals/codi/include/tapes/jacobiTape.hpp:152:9: error: forward declaration of ‘struct codi::JacobiTape’
../../../externals/codi/include/activeReal.hpp:437:35: error: invalid use of incomplete type ‘struct codi::JacobiTape’
../../../externals/codi/include/tapes/jacobiTape.hpp:152:9: error: forward declaration of ‘struct codi::JacobiTape’
../../../externals/codi/include/activeReal.hpp:447:35: error: invalid use of incomplete type ‘struct codi::JacobiTape’
../../../externals/codi/include/tapes/jacobiTape.hpp:152:9: error: forward declaration of ‘struct codi::JacobiTape’
../../../externals/codi/include/activeReal.hpp:457:35: error: invalid use of incomplete type ‘struct codi::JacobiTape’
../../../externals/codi/include/tapes/jacobiTape.hpp:152:9: error: forward declaration of ‘struct codi::JacobiTape’
In file included from ../../../Common/lib/../src/../include/././ad_structure.hpp:189:0,
                from ../../../Common/lib/../src/../include/././datatype_structure.hpp:60,
                from ../../../Common/lib/../src/../include/./mpi_structure.hpp:46,
                from ../../../Common/lib/../src/../include/config_structure.hpp:41,
                from ../../../Common/lib/../src/config_structure.cpp:38:
../../../Common/lib/../src/../include/././ad_structure.inl:49:45: error: template argument 1 is invalid
../../../Common/lib/../src/../include/././ad_structure.inl:49:45: error: template argument 2 is invalid
../../../Common/lib/../src/../include/././ad_structure.inl:49:58: error: invalid type in declaration before ‘;’ token
../../../Common/lib/../src/../include/././ad_structure.inl:65:10: error:  ‘Position’ in ‘codi::ActiveReal<codi::JacobiTape>::TapeType {aka  struct codi::JacobiTape}’ does not name a type
../../../Common/lib/../src/../include/././ad_structure.inl:67:45: error: template argument 1 is invalid
../../../Common/lib/../src/../include/././ad_structure.inl:67:45: error: template argument 2 is invalid
../../../Common/lib/../src/../include/././ad_structure.inl:67:63: error: invalid type in declaration before ‘;’ token
../../../Common/lib/../src/../include/././ad_structure.inl: In function ‘void AD::RegisterInput(su2double&)’:
../../../Common/lib/../src/../include/././ad_structure.inl:71:61: error:  invalid use of incomplete type  ‘codi::ActiveReal<codi::JacobiTape>::TapeType {aka struct  codi::JacobiTape}’
../../../externals/codi/include/tapes/jacobiTape.hpp:152:9: error:  forward declaration of  ‘codi::ActiveReal<codi::JacobiTape>::TapeType {aka struct  codi::JacobiTape}’
../../../Common/lib/../src/../include/././ad_structure.inl:72:58: error:  request for member ‘push_back’ in ‘AD::inputValues’, which is of  non-class type ‘int’
../../../Common/lib/../src/../include/././ad_structure.inl:72:73: error: ‘su2double’ has no member named ‘getGradientData’
../../../Common/lib/../src/../include/././ad_structure.inl: In function ‘void AD::RegisterOutput(su2double&)’:
../../../Common/lib/../src/../include/././ad_structure.inl:74:62: error:  invalid use of incomplete type  ‘codi::ActiveReal<codi::JacobiTape>::TapeType {aka struct  codi::JacobiTape}’
../../../externals/codi/include/tapes/jacobiTape.hpp:152:9: error:  forward declaration of  ‘codi::ActiveReal<codi::JacobiTape>::TapeType {aka struct  codi::JacobiTape}’
../../../Common/lib/../src/../include/././ad_structure.inl: In function ‘void AD::ResetInput(su2double&)’:
../../../Common/lib/../src/../include/././ad_structure.inl:76:49: error: ‘su2double’ has no member named ‘getGradientData’
../../../Common/lib/../src/../include/././ad_structure.inl: In function ‘void AD::StartRecording()’:
../../../Common/lib/../src/../include/././ad_structure.inl:78:47: error:  invalid use of incomplete type  ‘codi::ActiveReal<codi::JacobiTape>::TapeType {aka struct  codi::JacobiTape}’
../../../externals/codi/include/tapes/jacobiTape.hpp:152:9: error:  forward declaration of  ‘codi::ActiveReal<codi::JacobiTape>::TapeType {aka struct  codi::JacobiTape}’
../../../Common/lib/../src/../include/././ad_structure.inl: In function ‘void AD::StopRecording()’:
../../../Common/lib/../src/../include/././ad_structure.inl:80:46: error:  invalid use of incomplete type  ‘codi::ActiveReal<codi::JacobiTape>::TapeType {aka struct  codi::JacobiTape}’
../../../externals/codi/include/tapes/jacobiTape.hpp:152:9: error:  forward declaration of  ‘codi::ActiveReal<codi::JacobiTape>::TapeType {aka struct  codi::JacobiTape}’
../../../Common/lib/../src/../include/././ad_structure.inl: In function ‘void AD::ClearAdjoints()’:
../../../Common/lib/../src/../include/././ad_structure.inl:82:46: error:  invalid use of incomplete type  ‘codi::ActiveReal<codi::JacobiTape>::TapeType {aka struct  codi::JacobiTape}’
../../../externals/codi/include/tapes/jacobiTape.hpp:152:9: error:  forward declaration of  ‘codi::ActiveReal<codi::JacobiTape>::TapeType {aka struct  codi::JacobiTape}’
../../../Common/lib/../src/../include/././ad_structure.inl: In function ‘void AD::ComputeAdjoint()’:
../../../Common/lib/../src/../include/././ad_structure.inl:84:47: error:  invalid use of incomplete type  ‘codi::ActiveReal<codi::JacobiTape>::TapeType {aka struct  codi::JacobiTape}’
../../../externals/codi/include/tapes/jacobiTape.hpp:152:9: error:  forward declaration of  ‘codi::ActiveReal<codi::JacobiTape>::TapeType {aka struct  codi::JacobiTape}’
../../../Common/lib/../src/../include/././ad_structure.inl: In function ‘void AD::Reset()’:
../../../Common/lib/../src/../include/././ad_structure.inl:88:21: error:  request for member ‘size’ in ‘AD::inputValues’, which is of non-class  type ‘int’
../../../Common/lib/../src/../include/././ad_structure.inl:89:17: error:  invalid use of incomplete type  ‘codi::ActiveReal<codi::JacobiTape>::TapeType {aka struct  codi::JacobiTape}’
../../../externals/codi/include/tapes/jacobiTape.hpp:152:9: error:  forward declaration of  ‘codi::ActiveReal<codi::JacobiTape>::TapeType {aka struct  codi::JacobiTape}’
../../../Common/lib/../src/../include/././ad_structure.inl:91:19: error:  request for member ‘clear’ in ‘AD::inputValues’, which is of non-class  type ‘int’
../../../Common/lib/../src/../include/././ad_structure.inl: In function ‘void AD::SetPreaccIn(const su2double&)’:
../../../Common/lib/../src/../include/././ad_structure.inl:98:26: error:  request for member ‘push_back’ in ‘AD::localInputValues’, which is of  non-class type ‘int’
../../../Common/lib/../src/../include/././ad_structure.inl:98:41: error: ‘const su2double’ has no member named ‘getGradientData’
../../../Common/lib/../src/../include/././ad_structure.inl: In function ‘void AD::SetPreaccIn(const su2double*, int)’:
../../../Common/lib/../src/../include/././ad_structure.inl:107:28:  error: request for member ‘push_back’ in ‘AD::localInputValues’, which  is of non-class type ‘int’
../../../Common/lib/../src/../include/././ad_structure.inl:107:46:  error: ‘const su2double’ has no member named ‘getGradientData’
../../../Common/lib/../src/../include/././ad_structure.inl: In function  ‘void AD::SetPreaccIn(const su2double* const*, int, int)’:
../../../Common/lib/../src/../include/././ad_structure.inl:118:30:  error: request for member ‘push_back’ in ‘AD::localInputValues’, which  is of non-class type ‘int’
../../../Common/lib/../src/../include/././ad_structure.inl:118:51:  error: ‘const su2double’ has no member named ‘getGradientData’
../../../Common/lib/../src/../include/././ad_structure.inl: In function ‘void AD::StartPreacc()’:
../../../Common/lib/../src/../include/././ad_structure.inl:126:19:  error: invalid use of incomplete type  ‘codi::ActiveReal<codi::JacobiTape>::TapeType {aka struct  codi::JacobiTape}’
../../../externals/codi/include/tapes/jacobiTape.hpp:152:9: error:  forward declaration of  ‘codi::ActiveReal<codi::JacobiTape>::TapeType {aka struct  codi::JacobiTape}’
../../../Common/lib/../src/../include/././ad_structure.inl:127:7: error: ‘StartPosition’ was not declared in this scope
../../../Common/lib/../src/../include/././ad_structure.inl:127:33:  error: invalid use of incomplete type  ‘codi::ActiveReal<codi::JacobiTape>::TapeType {aka struct  codi::JacobiTape}’
../../../externals/codi/include/tapes/jacobiTape.hpp:152:9: error:  forward declaration of  ‘codi::ActiveReal<codi::JacobiTape>::TapeType {aka struct  codi::JacobiTape}’
In file included from ../../../Common/lib/../src/../include/././datatype_structure.inl:178:0,
                from ../../../Common/lib/../src/../include/././datatype_structure.hpp:130,
                from ../../../Common/lib/../src/../include/./mpi_structure.hpp:46,
                from ../../../Common/lib/../src/../include/config_structure.hpp:41,
                from ../../../Common/lib/../src/config_structure.cpp:38:
../../../Common/lib/../src/../include/././datatypes/codi_reverse_structure.inl:  In function ‘void SU2_TYPE::SetValue(su2double&, const  double&)’:
../../../Common/lib/../src/../include/././datatypes/codi_reverse_structure.inl:40:66:  error: ‘su2double’ has no member named ‘setValue’
../../../Common/lib/../src/../include/././datatypes/codi_reverse_structure.inl:  In function ‘double SU2_TYPE::GetValue(const su2double&)’:
../../../Common/lib/../src/../include/././datatypes/codi_reverse_structure.inl:42:63:  error: ‘const su2double’ has no member named ‘getValue’
../../../Common/lib/../src/../include/././datatypes/codi_reverse_structure.inl:  In function ‘void SU2_TYPE::SetSecondary(su2double&, const  double&)’:
../../../Common/lib/../src/../include/././datatypes/codi_reverse_structure.inl:44:70:  error: ‘su2double’ has no member named ‘setGradient’
../../../Common/lib/../src/../include/././datatypes/codi_reverse_structure.inl:  In function ‘double SU2_TYPE::GetSecondary(const su2double&)’:
../../../Common/lib/../src/../include/././datatypes/codi_reverse_structure.inl:46:76:  error: invalid use of incomplete type  ‘codi::ActiveReal<codi::JacobiTape>::TapeType {aka struct  codi::JacobiTape}’
../../../externals/codi/include/tapes/jacobiTape.hpp:152:9: error:  forward declaration of  ‘codi::ActiveReal<codi::JacobiTape>::TapeType {aka struct  codi::JacobiTape}’
In file included from ../../../Common/lib/../src/../include/././datatype_structure.inl:178:0,
                from ../../../Common/lib/../src/../include/././datatype_structure.hpp:130,
                from ../../../Common/lib/../src/../include/./mpi_structure.hpp:46,
                from ../../../Common/lib/../src/../include/config_structure.hpp:41,
                from ../../../Common/lib/../src/config_structure.cpp:38:
../../../Common/lib/../src/../include/././datatypes/codi_reverse_structure.inl:46:132:  error: invalid types ‘int[int]’ for array subscript
../../../Common/lib/../src/../include/././datatypes/codi_reverse_structure.inl:  In function ‘double SU2_TYPE::GetDerivative(const su2double&)’:
../../../Common/lib/../src/../include/././datatypes/codi_reverse_structure.inl:48:77:  error: invalid use of incomplete type  ‘codi::ActiveReal<codi::JacobiTape>::TapeType {aka struct  codi::JacobiTape}’
../../../externals/codi/include/tapes/jacobiTape.hpp:152:9: error:  forward declaration of  ‘codi::ActiveReal<codi::JacobiTape>::TapeType {aka struct  codi::JacobiTape}’
../../../Common/lib/../src/../include/././datatypes/codi_reverse_structure.inl:48:133:  error: invalid types ‘int[int]’ for array subscript
../../../Common/lib/../src/../include/././datatypes/codi_reverse_structure.inl:  In function ‘void SU2_TYPE::SetDerivative(su2double&, const  double&)’:
../../../Common/lib/../src/../include/././datatypes/codi_reverse_structure.inl:50:71:  error: ‘su2double’ has no member named ‘setGradient’
In file included from  ../../../externals/medi/include/medi/ampi/../../../generated/medi/../../include/medi/ampi/typePassive.hpp:33:0,
                from ../../../externals/medi/include/medi/ampi/../../../generated/medi/ampiDefinitions.h:33,
                from ../../../externals/medi/include/medi/ampi/async.hpp:33,
                from ../../../externals/medi/include/medi/ampi/ampi.hpp:33,
                from ../../../externals/medi/include/medi/medi.hpp:33,
                from ../../../Common/lib/../src/../include/./mpi_structure.hpp:55,
                from ../../../Common/lib/../src/../include/config_structure.hpp:41,
                from ../../../Common/lib/../src/config_structure.cpp:38:
../../../externals/medi/include/medi/ampi/../../../generated/medi/../../include/medi/ampi/../adToolPassive.hpp: At global scope:
../../../externals/medi/include/medi/ampi/../../../generated/medi/../../include/medi/ampi/../adToolPassive.hpp:45:29:  error: expected initializer before ‘:’ token
../../../Common/lib/../src/config_structure.cpp:7475:1: error: expected ‘}’ at end of input
In file included from ../../../externals/codi/include/codi.hpp:31:0,
                from ../../../Common/lib/../src/../include/././datatypes/codi_reverse_structure.hpp:39,
                from ../../../Common/lib/../src/../include/././datatype_structure.hpp:51,
                from ../../../Common/lib/../src/../include/./mpi_structure.hpp:46,
                from ../../../Common/lib/../src/../include/config_structure.hpp:41,
                from ../../../Common/lib/../src/config_structure.cpp:38:
../../../externals/codi/include/activeReal.hpp: In instantiation of  ‘codi::JacobiTape codi::ActiveReal<codi::JacobiTape>::globalTape’:
../../../externals/codi/include/activeReal.hpp:330:52:  instantiated  from ‘bool codi::ActiveReal<Tape>::isActive() const [with Tape =  codi::JacobiTape]’
../../../Common/lib/../src/../include/././ad_structure.inl:97:25:  instantiated from here
../../../externals/codi/include/activeReal.hpp:642:8: error:  ‘codi::ActiveReal<codi::JacobiTape>::globalTape’ has incomplete  type
In file included from ../../../externals/codi/include/codi.hpp:31:0,
                from ../../../Common/lib/../src/../include/././datatypes/codi_reverse_structure.hpp:39,
                from ../../../Common/lib/../src/../include/././datatype_structure.hpp:51,
                from ../../../Common/lib/../src/../include/./mpi_structure.hpp:46,
                from ../../../Common/lib/../src/../include/config_structure.hpp:41,
                from ../../../Common/lib/../src/config_structure.cpp:38:
../../../externals/codi/include/activeReal.hpp: In member function ‘bool  codi::ActiveReal<Tape>::isActive() const [with Tape =  codi::JacobiTape]’:
../../../Common/lib/../src/../include/././ad_structure.inl:97:25:  instantiated from here
../../../externals/codi/include/activeReal.hpp:330:52: error: ‘const  class codi::ActiveReal<codi::JacobiTape>’ has no member named  ‘gradientData’
make[2]: *** [../src/libSU2_AD_a-config_structure.o] Error 1
make[2]: Leaving directory `/users/mep15tpp/SU2-6.0.0/SU2-master/SU2_AD/Common/lib'
make[1]: *** [install-recursive] Error 1
make[1]: Leaving directory `/users/mep15tpp/SU2-6.0.0/SU2-master/SU2_AD'
make: *** [install-SU2_AD] Error 2
i'm really not sure where to go from here, any help would be greatly appreciated!
thanks
Tom

tomp1993 March 9, 2018 09:58
more info:
the kernel is Scientific Linux 5.11 and the CPU's are lx24-amd64
if there is any other info that might help solve this one please let me know.
Many thanks
Tom

talbring March 17, 2018 06:25
Hi Tom,

I just tested your combination of gcc v4.9 and openmpi v3.0 on our cluster and it compiles fine. Make sure that make really uses these versions. Remember that you may have to run preconfigure.py again after updating compilers.

Tim


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