[hyunko]

Hi all,

I am trying to compile SU2 7.0 blackbird on macOS Catalina.

Before the compiling, the binary files are working well.

When I tried to build using meson.py, I got the following outputs seems URLError.

Please check the following messages and give me the help.

Thanks in advance.

=============================================
>>./meson.py build
Downloading CoDiPack '501dcf0305df147481630f20ce37c2e624fb351f'
Traceback (most recent call last):
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.7/lib/python3.7/urllib/request.py", line 1317, in do_open
encode_chunked=req.has_header('Transfer-encoding'))
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.7/lib/python3.7/http/client.py", line 1229, in request
self._send_request(method, url, body, headers, encode_chunked)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.7/lib/python3.7/http/client.py", line 1275, in _send_request
self.endheaders(body, encode_chunked=encode_chunked)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.7/lib/python3.7/http/client.py", line 1224, in endheaders
self._send_output(message_body, encode_chunked=encode_chunked)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.7/lib/python3.7/http/client.py", line 1016, in _send_output
self.send(msg)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.7/lib/python3.7/http/client.py", line 956, in send
self.connect()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.7/lib/python3.7/http/client.py", line 1392, in connect
server_hostname=server_hostname)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.7/lib/python3.7/ssl.py", line 412, in wrap_socket
session=session
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.7/lib/python3.7/ssl.py", line 853, in _create
self.do_handshake()
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.7/lib/python3.7/ssl.py", line 1117, in do_handshake
self._sslobj.do_handshake()
ssl.SSLCertVerificationError: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1056)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "./meson.py", line 71, in <module>
init_submodules('auto')
File "/Users/hyunko/Work/SU2-7.0/su2code/meson_scripts/init.py", line 85, in init_submodules
download_module(codi_name, alt_name_codi, github_repo_codi, sha_version_codi)
File "/Users/hyunko/Work/SU2-7.0/su2code/meson_scripts/init.py", line 165, in download_module
urllib.request.urlretrieve (url, commit_sha + '.zip')
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.7/lib/python3.7/urllib/request.py", line 247, in urlretrieve
with contextlib.closing(urlopen(url, data)) as fp:
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.7/lib/python3.7/urllib/request.py", line 222, in urlopen
return opener.open(url, data, timeout)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.7/lib/python3.7/urllib/request.py", line 525, in open
response = self._open(req, data)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.7/lib/python3.7/urllib/request.py", line 543, in _open
'_open', req)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.7/lib/python3.7/urllib/request.py", line 503, in _call_chain
result = func(*args)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.7/lib/python3.7/urllib/request.py", line 1360, in https_open
context=self._context, check_hostname=self._check_hostname)
File "/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.7/lib/python3.7/urllib/request.py", line 1319, in do_open
raise URLError(err)
urllib.error.URLError: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1056)>

[talbring]

Hi Hyun,

can you try to install the certifi package like it is detailed here: https://timonweb.com/tutorials/fixin...ml-out-on-mac/

Please report back whether that helps or not.

[hyunko]

Hi talbring,

I got the following messages and same urlliberror.
I guess it is related to python version.
I have installed python3 but pip is linked to python2.7.

Any remedy for that?

Thanks.


=========================

hyunko@HYUNui-MacBookPro ~ % pip install --upgrade certifi

DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/develo...thon-2-support
WARNING: The directory '/Users/hyunko/Library/Caches/pip/http' or its parent directory is not owned by the current user and the cache has been disabled. Please check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag.
WARNING: The directory '/Users/hyunko/Library/Caches/pip' or its parent directory is not owned by the current user and caching wheels has been disabled. check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag.
Requirement already up-to-date: certifi in /Library/Python/2.7/site-packages (2019.11.28)

[talbring]

Can you try the installation with pip3 ? And also maybe the alternative step found in the link I posted above?

[hyunko]

Thanks.

I have installed python following instruction. (see the link)

https://opensource.com/article/19/5/...-3-default-mac

It works.

Too many warnings(approx. 700 warnings) are generated rather than Ubuntu.

Although too many warnings, SU2 runs well in parallel mode.


Thanks again.

================================================== ==
../SU2_CFD/include/solver_structure.hpp:3590:16: note: overridden virtual function is here
virtual void LoadRestart(CGeometry **geometry, CSolver ***solver,
^
../SU2_CFD/include/solver_structure.hpp:13144:8: warning: 'ComputeResidual_Multizone' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
void ComputeResidual_Multizone(CGeometry *geometry, CConfig *config);
^
../SU2_DEF/src/../include/../../SU2_CFD/include/solver_structure.hpp:294:16: note: overridden virtual function is here
virtual void ComputeResidual_Multizone(CGeometry *geometry, CConfig *config);
^
677 warnings generated.
[359/360] Installing files.
Installing SU2_CFD/src/SU2_CFD to /usr/local/bin
Installing SU2_DOT/src/SU2_DOT to /usr/local/bin
Installing SU2_DEF/src/SU2_DEF to /usr/local/bin
Installing SU2_GEO/src/SU2_GEO to /usr/local/bin

[amacedo]

Hello,


Were you able to build meson after that line?


I am having the error " PermissionError: [Errno 13] Permission denied: '/mnt/c/Users(...)/externals/codi' " after downloading CodiPack.


Thank you

[Audreyvus]

You are absolutely right. In it something is and it is excellent idea. It is ready to support you.