CFD Online Discussion Forums - SU2 Parallel Build Install Issue

I've spent some time trying to compile the parallel build for SU2 without much success (not that familiar with this type of stuff) after having installed a working serial build. I have searched and troubleshot but am still ending up having my lines repeated as the processors each tackle the problem individually rather than combine their efforts. I've seen in other posts that this means that I have not compiled it correctly but I do not know where to go to fix it.

Here is an example of the code being produced several times over:

Code:

---------------------- Local Time Stepping Summary ----------------------

MG level: 0 -> Min. DT: 0.0014005. Max. DT: 6.28794. CFL: 25.

MG level: 1 -> Min. DT: 0.00204115. Max. DT: 9.19148. CFL: 21.1166.

MG level: 2 -> Min. DT: 0.00189142. Max. DT: 14.7692. CFL: 19.4394.

-------------------------------------------------------------------------



----------------------- Residual Evolution Summary ----------------------

log10[Maximum residual]: -4.05266.

Maximum residual point 18259, located at (0.146565, 0.155084, -0.025158).

-------------------------------------------------------------------------



 Iter    Time(s)     Res[Rho]     Res[RhoE]      CL(Total)      CD(Total)

    0  19.109375    -5.204928     -4.597762       0.166106       0.052986

    1  17.406250    -4.668226     -4.054766       0.235420       0.045799

    1  17.468750    -4.668226     -4.054766       0.235420       0.045799

    1  17.546875    -4.668226     -4.054766       0.235420       0.045799

    1  17.765625    -4.668226     -4.054766       0.235420       0.045799

    2  16.973958    -4.750446     -4.158519       0.255504       0.029367

    2  17.062500    -4.750446     -4.158519       0.255504       0.029367

    2  17.145833    -4.750446     -4.158519       0.255504       0.029367

    2  17.317708    -4.750446     -4.158519       0.255504       0.029367

    3  16.761719    -4.803657     -4.218884       0.272734       0.022452

    3  16.882812    -4.803657     -4.218884       0.272734       0.022452

    3  16.949219    -4.803657     -4.218884       0.272734       0.022452

    3  17.121094    -4.803657     -4.218884       0.272734       0.022452

Here is my config file:

Code:

jclegg@DESKTOP-CD3IBI9:/mnt/c/Users/Jon/Documents/SU2_Falcon/SU2-6.1.0$ ./configure --prefix=/mnt/c/Users/Jon/Documents/SU2_Falcon/SU2-6.1.0 CXXFLAGS="-O3" --enable-mpi --with-cc=/usr/bin/mpicc --with-cxx=/usr/bin/mpicxx

checking build system type... x86_64-unknown-linux-gnu

checking host system type... x86_64-unknown-linux-gnu

checking target system type... x86_64-unknown-linux-gnu

checking for a BSD-compatible install... /usr/bin/install -c

checking whether build environment is sane... yes

checking for a thread-safe mkdir -p... /bin/mkdir -p

checking for gawk... gawk

checking whether make sets $(MAKE)... yes

checking whether make supports nested variables... yes

checking for style of include used by make... GNU

checking whether the C++ compiler works... yes

checking for C++ compiler default output file name... a.out

checking for suffix of executables...

checking whether we are cross compiling... no

checking for suffix of object files... o

checking whether we are using the GNU C++ compiler... yes

checking whether /usr/bin/mpicxx accepts -g... yes

checking dependency style of /usr/bin/mpicxx... gcc3

checking whether we are using the GNU C compiler... yes

checking whether /usr/bin/mpicc accepts -g... yes

checking for /usr/bin/mpicc option to accept ISO C89... none needed

checking dependency style of /usr/bin/mpicc... gcc3

checking whether /usr/bin/mpicc and cc understand -c and -o together... yes

checking for ranlib... ranlib

checking whether we are using the GNU C++ compiler... (cached) yes

checking whether /usr/bin/mpicxx accepts -g... (cached) yes

checking dependency style of /usr/bin/mpicxx... (cached) gcc3

checking for python... /usr/bin/python

checking for python version... 2.7

checking for python platform... linux2

checking for python script directory... ${prefix}/lib/python2.7/site-packages

checking for python extension module directory... ${exec_prefix}/lib/python2.7/site-packages

checking for python2.7-config... /usr/bin/python2.7-config

checking python include flags... -I/usr/include/python2.7 -I/usr/include/x86_64-linux-gnu/python2.7

checking how to run the C preprocessor... /usr/bin/mpicc -E

checking for grep that handles long lines and -e... /bin/grep

checking for egrep... /bin/grep -E

checking for ANSI C header files... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking size of short int... 2

checking size of int... 4

checking size of unsigned int... 4

checking size of long int... 8

checking size of float... 4

checking size of double... 8

checking size of void *... 8

checking X11/Intrinsic.h usability... no

checking X11/Intrinsic.h presence... no

checking for X11/Intrinsic.h... no

<<< Configuring library with Metis support >>>

<<< Configuring library with Parmetis support >>>

<<< Configuring library with CGNS support >>>

checking that generated files are newer than configure... done

configure: creating ./config.status

config.status: creating externals/tecio/Makefile

config.status: creating externals/metis/Makefile

config.status: creating externals/parmetis/Makefile

config.status: creating externals/cgns/Makefile

config.status: creating Makefile

config.status: creating externals/Makefile

config.status: creating Common/lib/Makefile

config.status: creating SU2_CFD/obj/Makefile

config.status: creating SU2_DOT/obj/Makefile

config.status: creating SU2_MSH/obj/Makefile

config.status: creating SU2_DEF/obj/Makefile

config.status: creating SU2_SOL/obj/Makefile

config.status: creating SU2_GEO/obj/Makefile

config.status: creating SU2_PY/Makefile

config.status: creating SU2_PY/pySU2/Makefile

config.status: executing depfiles commands





-------------------------------------------------------------------------

|    ___ _   _ ___                                                      |

|   / __| | | |_  )   Release 6.1.0 'Falcon'                            |

|   \__ \ |_| |/ /                                                      |

|   |___/\___//___|   Suite                                             |

|                                                                       |

-------------------------------------------------------------------------

| The current SU2 release has been coordinated by the                   |

| SU2 International Developers Society <www.su2devsociety.org>          |

| with selected contributions from the open-source community.           |

-------------------------------------------------------------------------

| The main research teams contributing to the current release are:      |

| - Prof. Juan J. Alonso's group at Stanford University.                |

| - Prof. Piero Colonna's group at Delft University of Technology.      |

| - Prof. Nicolas R. Gauger's group at Kaiserslautern U. of Technology. |

| - Prof. Alberto Guardone's group at Polytechnic University of Milan.  |

| - Prof. Rafael Palacios' group at Imperial College London.            |

| - Prof. Vincent Terrapon's group at the University of Liege.          |

| - Prof. Edwin van der Weide's group at the University of Twente.      |

| - Lab. of New Concepts in Aeronautics at Tech. Inst. of Aeronautics.  |

-------------------------------------------------------------------------

| Copyright 2012-2018, Francisco D. Palacios, Thomas D. Economon,       |

|                      Tim Albring, and the SU2 contributors.           |

|                                                                       |

| SU2 is free software; you can redistribute it and/or                  |

| modify it under the terms of the GNU Lesser General Public            |

| License as published by the Free Software Foundation; either          |

| version 2.1 of the License, or (at your option) any later version.    |

|                                                                       |

| SU2 is distributed in the hope that it will be useful,                |

| but WITHOUT ANY WARRANTY; without even the implied warranty of        |

| MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU      |

| Lesser General Public License for more details.                       |

|                                                                       |

| You should have received a copy of the GNU Lesser General Public      |

| License along with SU2. If not, see <http://www.gnu.org/licenses/>.   |

-------------------------------------------------------------------------



Build Configuration Summary:



    Source code location: /mnt/c/Users/Jon/Documents/SU2_Falcon/SU2-6.1.0

    Install location:     /mnt/c/Users/Jon/Documents/SU2_Falcon/SU2-6.1.0

    Version:              6.1.0

    C++ Compiler:         /usr/bin/mpicxx

    C Compiler:           /usr/bin/mpicc

    Preprocessor flags:   -DHAVE_MPI

    Compiler flags:       -O3

    Linker flags:

    MPI support:          yes

    Metis support:        yes

    Parmetis support:     yes

    TecIO support:        no

    CGNS support:         yes

    HDF5 support:         no

    SZIP support:         no

    ZLIB support:         no

    Mutation++ support:   no

    Jsoncpp support:      no

    LAPACK support:       no

    Datatype support:

        double              yes

        complex             no

        codi_reverse        no

        codi_forward        no



    External includes:    -DHAVE_CGNS -I$(top_srcdir)/externals/cgns -I$(top_srcdir)/externals/cgns/adf -DHAVE_PARMETIS -I$(top_srcdir)/externals/parmetis/include -DHAVE_METIS -I$(top_srcdir)/externals/metis/include

    External libs:        $(top_builddir)/externals/cgns/libcgns.a $(top_builddir)/externals/parmetis/libparmetis.a $(top_builddir)/externals/metis/libmetis.a



    Build SU2_CFD:        yes

    Build SU2_DOT:        yes

    Build SU2_MSH:        yes

    Build SU2_DEF:        yes

    Build SU2_SOL:        yes

    Build SU2_GEO:        yes

    Build Py Wrapper:     no



Please be sure to add the $SU2_HOME and $SU2_RUN environment variables,

and update your $PATH (and $PYTHONPATH if applicable) with $SU2_RUN.



Based on the input to this configuration, add these lines to your .bashrc file:



export SU2_RUN="/mnt/c/Users/Jon/Documents/SU2_Falcon/SU2-6.1.0/bin"

export SU2_HOME="/mnt/c/Users/Jon/Documents/SU2_Falcon/SU2-6.1.0"

export PATH=$PATH:$SU2_RUN

export PYTHONPATH=$PYTHONPATH:$SU2_RUN

Thanks in advance.