Patches for OpenFOAM 1.7 on MacOS X
2 Attachment(s)
Hi!
Attached there are two patches that patch the OpenFOAM and the ThirdParty-directory of the new 1.7-release. For installation and requirements (case sensitive file system) see for instance http://openfoamwiki.net/index.php/Ho...enFOAM_v16_Mac (if somebody feels like rewriting/adapting that: go ahead) Some remarks on the patch: - only the darwinIntel64-architecture has been tested - the patch assumes that you use gcc 4.5 from MacPorts. If you don't: replace all instances of the form gcc-mp-4.5 with the compiler of your choice - tecplotWriter does not compile - as soon as paraview is compiled the PV3FoamReader will compile. It will load as a plugin into paraview. Nevertheless: it will crash paraview as it needs a different version of the libstdc++.6.dylib than the one paraview uses (paraview fails to compile with the same compiler as OF). Only solution: remove the libPV3FoamReader_SM.dylib and use the OF-Reader built into paraview. Alternative would be to compile OF with the v4.2-compiler that comes with MacOS X Bernhard |
You rock!
Thanks |
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Bernhard |
Have you guys tried this?
http://www.parallels.com/uk/products/desktop/ I recently switched to this instead of dealing with the mac-issues. Since I dont do any serious work on my mac, but only write code and run simple tests I find this to be an incredible piece of software. You can download a free trial version for 2 weeks. |
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Thanks ! PO |
Working with finkproject compilers
Hi,
Just thought I would let everyone know that the patches work as advertised with fink project compilers (gcc45 package). To do modify the patch file (OpenFOAM-1.7-Mac.patch): Replace -mp- with -fsf- Replace 4.3 with 4.5 Chris Butler |
Bernhard,
thanks a lot. Wonderful! The OF1.7 mac port is now ok to run on snow leopard 10.6.3 with gcc4.5 installed by macports. Because of the error of 'time', the foamToTecplot360 has not been compiled. The Paraview 3.8 for Mac is now availabe for post-processing. :) Leo |
Problems OpenFOAM 1.7 mac
Hi all,
I have run into some problems with OpenFOAM-1.7 on mac os 10.6.4. The tutorial for nonNewtonianIcoFoam appears to fail (due to a solution singularity). This at first glance appears to be due to blockMesh failing to produce an adequate mesh (see the attached file). The tutorial correctly executed with the debian 1.7 install (and 1.6 source install on CentOS). Has anyone else had any problems? I have created meshes which do not contain the arc object without any trouble. Any feedback would be much appreciated. Cheers, Chris Butler P.S. If this post is in the wrong forum my apologies. |
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Bernhard |
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BTW: have a look at the mesh in paraview. No wonder checkMesh doesn't like it. |
I just tested (I have compiled OF-1.7.x with gcc-4.3.4) / no problem here with this tutorial.
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1.6/gcc-4.5-Opt: broken Mesh 1.6/gcc-4.5-Debug: mesh OK 1.6/gcc-4.3-Opt: mesh OK 1.7/gcc-4.5-Opt: mesh broken So the problem seems to be gcc-4.5 with optimization. The remaining question: does this only happen on a Mac or elsewhere, too? Bernhard |
gcc 4.4
Hi,
I am building OF-1.7 with gcc-4.4 on both OSX and linux, however, I do not have a linux box with gcc above 4.4.4. So if anyone could test this tutorial on linux with gcc-4.5 it would be appreciated. CB |
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CB |
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I run the case of coalChemistryFoam/simplifiedSiwek, at time=0.252 it broken, the log reads: ======================================= Courant Number mean: 0.1533929535 max: 0.6093346791 deltaT = 0.0005 Time = 0.252 Cloud: coalCloud1 Total number of parcels added = 27 Total mass introduced = 0.0001 Current number of parcels = 27 Current mass in system = 7.634816181e-05 Mass transfer phase change = 2.487806921e-06 Mass transfer devolatilisation = 1.096268892e-05 Mass transfer surface reaction = 1.020134234e-05 Cloud: limestoneCloud1 Total number of parcels added = 18 Total mass introduced = 0.0001 Current number of parcels = 18 Current mass in system = 0.0001 Solving chemistry diagonal: Solving for rho, Initial residual = 0, Final residual = 0, No Iterations 0 DILUPBiCG: Solving for Ux, Initial residual = 0.06843280288, Final residual = 5.521803873e-06, No Iterations 3 DILUPBiCG: Solving for Uy, Initial residual = 0.08299776218, Final residual = 6.610758425e-07, No Iterations 4 DILUPBiCG: Solving for O2, Initial residual = 0.02991408207, Final residual = 2.316092842e-07, No Iterations 4 DILUPBiCG: Solving for CH4, Initial residual = 0.02443785456, Final residual = 2.649269485e-07, No Iterations 4 DILUPBiCG: Solving for H2, Initial residual = 0.0315238668, Final residual = 3.822091915e-07, No Iterations 4 DILUPBiCG: Solving for CO2, Initial residual = 0.02938438982, Final residual = 4.003208991e-07, No Iterations 4 DILUPBiCG: Solving for H2O, Initial residual = 0.03523143241, Final residual = 1.795963946e-08, No Iterations 5 DILUPBiCG: Solving for hs, Initial residual = 0.04197246509, Final residual = 5.114508673e-07, No Iterations 4 --> FOAM FATAL ERROR: attempt to use janafThermo<equationOfState> out of temperature range 0 -> 5000; T = -461.698 From function janafThermo<equationOfState>::checkT(const scalar T) const in file /Users/dingsudong/OpenFOAM/OpenFOAM-1.7.0/src/thermophysicalModels/specie/lnInclude/janafThermoI.H at line 63. FOAM aborting =========================================== but on my linux workstation, it's ok. the configuration as below, Mac: Mac OS X 10.6.3, gcc-mp-4.5, OpenFoam 1.7 Linux: OpenSuse 11.1, gcc-4.3, Openfoam 1.7 would you reproduce it? Leo |
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Cb |
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So it is not a Mac-problem but a problem with the case (and possibly the compiler) Bernhard |
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I just check the log file for the calculation on Linux port again, you are right. it's same error as you said that with a slightly different time and a different temperature. It should be reported to developer as a bug. regards, Leo |
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for your information. |
Problems with compiling OF 1.7 on mac
Dear all,
i decided to try compiling OF 1.7 on a mac with bernards patches. After setting the gcc-mp-4.5 compiler for compilation and executing the Allwmake there is the following error in the output: make: Nothing to be done for `all'. + wmakePrintBuild -check no git description found + /bin/rm -f 'OpenFOAM/Make/darwinIntel64DPOpt/global.?' + wmakeLnInclude OpenFOAM + wmakeLnInclude OSspecific/POSIX + Pstream/Allwmake + wmake libso dummy 'libNULL.dylib' is up to date. + case "$WM_MPLIB" in + set +x Note: ignore spurious warnings about missing mpicxx.h headers + WM_OPTIONS=darwinIntel64DPOptOPENMPI + wmake libso mpi 'libNULL.dylib' is up to date. + wmake libo OSspecific/POSIX ld -r -o libNULL.o ld: warning: -arch not specified ld: no object files specified for inferred architecture x86_64 make: *** [libNULL.o] Error 1 + wmake libso OpenFOAM 'libNULL.dylib' is up to date. + wmake libso lagrangian/basic 'libNULL.dylib' is up to date. + wmake libso triSurface 'libNULL.dylib' is up to date. + wmake libso edgeMesh 'libNULL.dylib' is up to date. + wmake libso surfMesh 'libNULL.dylib' is up to date. + decompositionMethods/AllwmakeLnInclude + wmakeLnInclude decompositionMethods + wmakeLnInclude metisDecomp + wmakeLnInclude parMetisDecomp + wmakeLnInclude scotchDecomp + dummyThirdParty/Allwmake + wmake libso scotchDecomp 'libNULL.dylib' is up to date. + wmake libso metisDecomp 'libNULL.dylib' is up to date. + wmake libso parMetisDecomp 'libNULL.dylib' is up to date. + wmake libso MGridGen/MGridGen 'libNULL.dylib' is up to date. + decompositionMethods/Allwmake + wmakeLnInclude decompositionMethods + wmake libso scotchDecomp 'libNULL.dylib' is up to date. + wmake libso metisDecomp 'libNULL.dylib' is up to date. + '[' -d /Users/stonehope/OpenFOAM/OpenFOAM-1.7/lib/darwinIntel64DPOpt/openmpi-1.4.1 ']' + wmake libso decompositionMethods 'libNULL.dylib' is up to date. + wmake libso meshTools 'libNULL.dylib' is up to date. + wmake libso finiteVolume 'libNULL.dylib' is up to date. + wmake libso genericPatchFields 'libNULL.dylib' is up to date. + wmake libso sampling 'libNULL.dylib' is up to date. + wmake libso dynamicMesh 'libNULL.dylib' is up to date. + wmake libso dynamicFvMesh 'libNULL.dylib' is up to date. + wmake libso topoChangerFvMesh 'libNULL.dylib' is up to date. + wmake libso ODE 'libNULL.dylib' is up to date. + wmake libso randomProcesses 'libNULL.dylib' is up to date. + thermophysicalModels/Allwmake + wmake libso specie 'libNULL.dylib' is up to date. + wmake libso thermophysicalFunctions 'libNULL.dylib' is up to date. + wmake libso liquids 'libNULL.dylib' is up to date. + wmake libso liquidMixture 'libNULL.dylib' is up to date. + wmake libso solids 'libNULL.dylib' is up to date. + wmake libso solidMixture 'libNULL.dylib' is up to date. + wmake libso basic 'libNULL.dylib' is up to date. + wmake libso reactionThermo 'libNULL.dylib' is up to date. + wmake libso laminarFlameSpeed 'libNULL.dylib' is up to date. + wmake libso chemistryModel 'libNULL.dylib' is up to date. + wmake libso pdfs 'libNULL.dylib' is up to date. + wmake libso radiation 'libNULL.dylib' is up to date. + wmake libso barotropicCompressibilityModel 'libNULL.dylib' is up to date. + transportModels/Allwmake + wmake libso incompressible 'libNULL.dylib' is up to date. + wmake libso interfaceProperties 'libNULL.dylib' is up to date. + turbulenceModels/Allwmake + LES/Allwmake + wmakeLnInclude ../incompressible/LES + wmake libso LESfilters 'libNULL.dylib' is up to date. + wmake libso LESdeltas 'libNULL.dylib' is up to date. + incompressible/Allwmake + wmake libso turbulenceModel 'libNULL.dylib' is up to date. + wmake libso RAS 'libNULL.dylib' is up to date. + wmake libso LES 'libNULL.dylib' is up to date. + compressible/Allwmake + wmake libso turbulenceModel 'libNULL.dylib' is up to date. + wmake libso RAS 'libNULL.dylib' is up to date. + wmake libso LES 'libNULL.dylib' is up to date. + lagrangian/Allwmake + wmake libso basic 'libNULL.dylib' is up to date. + wmake libso solidParticle 'libNULL.dylib' is up to date. + wmake libso intermediate 'libNULL.dylib' is up to date. + wmake libso dieselSpray 'libNULL.dylib' is up to date. + wmake libso dsmc 'libNULL.dylib' is up to date. + wmake libso coalCombustion 'libNULL.dylib' is up to date. + molecularDynamics/Allwmake + wmake libso potential 'libNULL.dylib' is up to date. + wmake libso molecularMeasurements 'libNULL.dylib' is up to date. + wmake libso molecule 'libNULL.dylib' is up to date. + postProcessing/Allwmake + wmake libo postCalc ld -r -o libNULL.o ld: warning: -arch not specified ld: no object files specified for inferred architecture x86_64 make: *** [libNULL.o] Error 1 + wmake libso foamCalcFunctions 'libNULL.dylib' is up to date. + functionObjects/Allwmake + wmake libso field 'libNULL.dylib' is up to date. + wmake libso forces 'libNULL.dylib' is up to date. + wmake libso IO 'libNULL.dylib' is up to date. + wmake libso utilities 'libNULL.dylib' is up to date. + wmake libso systemCall 'libNULL.dylib' is up to date. + conversion/Allwmake + wmake libso 'libNULL.dylib' is up to date. + wmake libso autoMesh 'libNULL.dylib' is up to date. + wmake libso errorEstimation 'libNULL.dylib' is up to date. + fvAgglomerationMethods/Allwmake + wmake libso MGridGenGamgAgglomeration 'libNULL.dylib' is up to date. + wmake libso fvMotionSolver 'libNULL.dylib' is up to date. + wmake libso engine 'libNULL.dylib' is up to date. + wmake all solvers g++-mp-4.5 -m64 -DdarwinIntel64 -DWM_DP -Wall -Wno-strict-aliasing -Wextra -Wno-unused-parameter -Wold-style-cast -O3 -DNoRepository -ftemplate-depth-40 -IlnInclude -I. -I/Users/stonehope/OpenFOAM/OpenFOAM-1.7/src/OpenFOAM/lnInclude -I/Users/stonehope/OpenFOAM/OpenFOAM-1.7/src/OSspecific/POSIX/lnInclude -fPIC -Ddarwin -lpthread -L/Users/stonehope/OpenFOAM/OpenFOAM-1.7/lib/darwinIntel64DPOpt/openmpi-1.4.1 -lPstream -L/Users/stonehope/OpenFOAM/OpenFOAM-1.7/lib/darwinIntel64DPOpt \ -lOpenFOAM -lpthread -lm -o OpenFOAM.out ld: library not found for -lPstream collect2: ld returned 1 exit status make[2]: *** [OpenFOAM.out] Error 1 make[1]: *** [dnsFoam] Error 2 make[1]: Target `application' not remade because of errors. make: *** [DNS] Error 2 g++-mp-4.5 -m64 -DdarwinIntel64 -DWM_DP -Wall -Wno-strict-aliasing -Wextra -Wno-unused-parameter -Wold-style-cast -O3 -DNoRepository -ftemplate-depth-40 -IlnInclude -I. -I/Users/stonehope/OpenFOAM/OpenFOAM-1.7/src/OpenFOAM/lnInclude -I/Users/stonehope/OpenFOAM/OpenFOAM-1.7/src/OSspecific/POSIX/lnInclude -fPIC -Ddarwin -lpthread -L/Users/stonehope/OpenFOAM/OpenFOAM-1.7/lib/darwinIntel64DPOpt/openmpi-1.4.1 -lPstream -L/Users/stonehope/OpenFOAM/OpenFOAM-1.7/lib/darwinIntel64DPOpt \ -lOpenFOAM -lpthread -lm -o OpenFOAM.out ld: library not found for -lPstream collect2: ld returned 1 exit status make[2]: *** [OpenFOAM.out] Error 1 make[1]: *** [laplacianFoam] Error 2 g++-mp-4.5 -m64 -DdarwinIntel64 -DWM_DP -Wall -Wno-strict-aliasing -Wextra -Wno-unused-parameter -Wold-style-cast -O3 -DNoRepository -ftemplate-depth-40 -IlnInclude -I. -I/Users/stonehope/OpenFOAM/OpenFOAM-1.7/src/OpenFOAM/lnInclude -I/Users/stonehope/OpenFOAM/OpenFOAM-1.7/src/OSspecific/POSIX/lnInclude -fPIC -Ddarwin -lpthread -L/Users/stonehope/OpenFOAM/OpenFOAM-1.7/lib/darwinIntel64DPOpt/openmpi-1.4.1 -lPstream -L/Users/stonehope/OpenFOAM/OpenFOAM-1.7/lib/darwinIntel64DPOpt \ .... The Messages go on in a similar way. According to the log i guess there is a library missing somewhere, but i don't know where. Maybe someone of you can help me with this. Thank You. Stonehope |
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Could you check whether in $FOAM_SRC/OpenFOAM/Make/darwinBlaBla there is a number of .o-files? If yes, could you check with the file-command what they acctually are? Have you sourced the . etc/bashrc before compiling? Is your OF-installation on a case-sensitive filesystem? Bernhard |
Hi Bernhard,
thank you for your quick support. Yes, this log not from the first attemp to compile. In the $FOAM_SRC/OpenFOAM/Make/darwinIntel64DPOpt - directory there are no files like *.o . Should there be some of the .o-files? Yes, i sourced the . etc/bashrc. I'm using a script from the eth zurich, which is a bit modified from me, so that it is working with OF 1.7 to set the OF enviroment in the bash, could this cause such an error? I supposed, that it is working, because all "shortcuts" like "tut", "run" etc are working well. The filesystem is case sensitiv and created by using disk utility from mac OS. Thank You very much. Patrik |
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Bernhard Bernhard |
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The next problem is when I try to compile with ./Allwmake. I read a lot of messages "could not open file *.H for source file *.C". I've searched and it seems to me that the files exist. Is there somebody able to help me with the installation? Thank you Mattia |
OF1.7. for mac clean installation
Hi Mattia,
I will try to answer as much as I can of your problems. With respect to the 'could not open file' these messages will appear even when OpenFOAM does install on OS X. As for needing to create that directory 'OpenFOAM/lib/darwinIntelDPOpt' my understanding is the install should do it for you! I would check that you are installing OF on a case-sensitive partition or disk image. If you are not the installation will fail. If you need help please let me know. Chris B. |
Thank you Chris,
tonight the mac finished to compile the source for OpenFOAM with this message: make: Traget 'application' not remade because of errors. Nevertheless, I've tried to run blockMesh and icoFoam and it seems to me that they run. Now I've to install paraview to see if it will work. Regarding the directory, I've created a case-sensitive partition to install OpenFOAM, so probebly there is another problem. ciao mattia |
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If you rerun Allwmake without deleting files you should be able to scroll through and find out what failed to build. Paraview may fail to build but foamToTecplot360 will fail. This is most likely the source of your error. If they are the only component which fail your build should be o.k. The paraview binaries available from paraview.org should work fine (I would not bother trying to compile it). All that is will require is for you to create the .foam file in your case root directory. Cheers CB |
Installing 1.7 on g5 ppc
Hi All,
I am currently doing an install of OpenFOAM 1.7 on a dual processor (PPC) G5 running OS X 10.5.8. A couple of questions ... FIRST QUESTION - APPLYING THE PATCH When I went to apply the OpenFOAM-1.7-Mac.patch the terminal replied ... Quote:
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So my first question is, should I have hit 'n' when prompted or not ? ThirdParty-1.7-Mac.patch applied without any issue. SECOND QUESTION - etc/bashrc changes The unpacked OpenFOAM source is at: /Volumes/OpenFOAM/OpenFOAM-1.7.0 http://openfoamwiki.net/index.php/Ho...enFOAM_v16_Mac reads ... Quote:
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I tried this ... foamInstall=$/Volumes/OpenFOAM/$WM_PROJECT but when I ran Allwmake, that produced ... Quote:
foamInstall=$HOME/$WM_PROJECT ... produced the same error. Can anyone give me a pointer in terms of what lines in etc/bashrc I need to change and what values I need to change them to, to allow Allwmake to run without that error ? - Thanks in advance ! |
Greetings AussieRacer and welcome to the forum!
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foamInstall=/Volumes/$WM_PROJECT Additionally, you might want to change the line a bit below that one; change this one: Code:
export WM_PROJECT_USER_DIR=$HOME/$WM_PROJECT/$USER-$WM_PROJECT_VERSION Code:
export WM_PROJECT_USER_DIR=/Volumes/$WM_PROJECT/$USER-$WM_PROJECT_VERSION Code:
echo $WM_PROJECT_USER_DIR Code:
export WM_NCOMPPROCS=2 Code:
time ./Allwmake > make.log 2>&1 Good Luck! Bruno edit: @Bernhard: You might want to check this post for your patches for OpenFOAM 1.7.0: http://www.cfd-online.com/Forums/ope...tml#post271787 The problem as already been fixed for 1.7.x, but for 1.7.0 you'll need to: Quote:
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BTW: and thanks for answering all the other stuff |
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I made the changes to bashrc as you outlined above. |
Hi AussieRacer,
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So, if you don't want to change your "$HOME/.bashrc" file, you can simply run this, every time you start a new terminal: Code:
. /Volumes/OpenFOAM/OpenFOAM-1.7.0/etc/bashrc Now, so you can be certain that the variables are set, run this: Code:
echo $WM_PROJECT_DIR Good luck! Bruno |
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Thanks for your post. Yes I ran "touch foo" and "touch Foo" in the terminal and that created two separates files - one named "foo" and a second file named "Foo", so it looks like the volume is definitely case sensitive. Thanks for your help. |
Hi wyldcat,
Thanks again for your help - I really appreciate it. Quote:
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echo $WM_PROJECT_DIR Quote:
Am attempting to install now. Thanks again for everyone's help on this - it's fantastic to see this kind of community support with OpenFOAM. |
Hi AussieRacer,
I still managed to pick up your unedited post :) The issue you had posted was just a slight bug in Bernhard's patches, that only happens before the first build. Just edit the file "$WM_PROJECT_DIR/etc/apps/paraview3/bashrc", search for the lines that say: Code:
echo "Creating $PV_PLUGIN_PATH" Code:
mkdir -p $PV_PLUGIN_PATH Best regards, Bruno |
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Should I stop that build that is running right now, edit the file "$WM_PROJECT_DIR/etc/apps/paraview3/bashrc" and restart the build, or just let the build run ? When you say "that only happens before the first build", do you mean that the first build addresses that, or does the change need to be made to "$WM_PROJECT_DIR/etc/apps/paraview3/bashrc" before the first build is attempted ? Thanks again ! |
I should have been more explicit: there is no need to worry :) Just let it keep on building OpenFOAM. Because next time you "source" OpenFOAM's bashrc file (and/or open a new terminal), all will be well ;)
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