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Old   June 13, 2015, 14:41
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Syavash Asgari
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Quote:
Originally Posted by wyldckat View Post
Quick answer: Don't ask me. I never used LEMOS
I merely pointed out on that post you quoted where information about it could be found. And sadly I don't have time to go exploring it.
Thanks anyway,
Regards
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Old   June 14, 2015, 12:32
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Syavash Asgari
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All rights, I have gone through all the threads about inflow generator, but I could not find any person who could/have implement a non-uniform velocity boundary condition in LeMOS inflow generator. Can you please elaborate this a little further??!!! A brief example would be highly appreciated. I do not have any idea how to do this myself.

Regards
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Old   June 14, 2015, 13:18
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Hannes Kröger
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Dear syavash,

all required fields for the inflowGenerator-BC can be specified "uniform" or "nonuniform" in space but only steady in time. Unfortunately, there is no straightforward and comfortable way in OpenFOAM to specify the values for the "nonuniform" type of the value entry.

In our current development version, I have introduced a more flexible way of specifying the corresponding field entries. There, it can be not only "uniform" and "nonuniform" but also "linearProfile", "radialProfile", "fittedProfile" and so on.
But this not yet ready for release and also not yet documented.
( But in case you are interested: The same code is also used in the "extendedFixedValueBC" here: http://sourceforge.net/p/insightcae/...ions/openfoam/ )

For now you need a workaround. Some possibilities come into my mind:

1.)
If you don't mind a some programming, you could derive your own BC from the inflowGenerator-BC and set the fields in the "updateCoefficients" function. This also the only way if you need unsteadiness.

2.)
You create a dummy-copy of the field and specify some other BC, e.g. "groovyBC" or "timeVaryingMappedFixedValue", then you run the solver and let it compute and write a new timestep with the proper "nonuniform" value-statement in it. You can then copy this into your original field file and start the simulation with it.
I agree that this is pretty cumbersome. For that reason I started the new implementation...

Regards, Hannes
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Old   July 1, 2015, 03:10
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Syavash Asgari
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Dear Foamers,

Unfortunately despite following the steps in Readme file, I encounter errors when trying to install LeMOS. The error message is as follows:

Code:
syavash@syavash-VPCF11DGX:~/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x$ ./Allwmake + wmake libso libLEMOS-2.3.x
/usr/bin/ld: cannot find -lgsl
collect2: error: ld returned 1 exit status
make: *** [/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/lib/libLEMOS-2.3.x.so] Error 1
+ cd applications
+ wmake all solvers
make[1]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/solvers/basic'
make[2]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/solvers/basic/PODSolver'
g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-100 -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/libLEMOS-2.3.x/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/finiteVolume/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/meshTools/lnInclude  -IlnInclude -I. -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/OpenFOAM/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/OSspecific/POSIX/lnInclude   -fPIC -Xlinker --add-needed -Xlinker --no-as-needed Make/linux64GccDPOpt/PODSolver.o -L/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/lib \
         -lfiniteVolume -lmeshTools -lLEMOS-2.3.x -lOpenFOAM -ldl   -lm -o /home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/bin/PODSolver
/usr/bin/ld: cannot find -lLEMOS-2.3.x
collect2: error: ld returned 1 exit status
make[2]: *** [/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/bin/PODSolver] Error 1
make[2]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/solvers/basic/PODSolver'
make[1]: *** [PODSolver] Error 2
make[1]: Target `application' not remade because of errors.
make[1]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/solvers/basic'
make: *** [basic] Error 2
make[1]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/solvers/scalarPimpleFoam'
make[1]: `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/bin/scalarPimpleFoam' is up to date.
make[1]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/solvers/scalarPimpleFoam'
make[1]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/solvers/scalarPimpleFoamLDMMS'
SOURCE=scalarPimpleFoamLDMMS.C ;  g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-100 -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/turbulenceModels/incompressible/turbulenceModel -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/transportModels -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/transportModels/incompressible/singlePhaseTransportModel -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/turbulenceModels/LES/LESfilters/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/finiteVolume/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/meshTools/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/fvOptions/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/sampling/lnInclude -IlnInclude -I. -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/OpenFOAM/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/OSspecific/POSIX/lnInclude   -fPIC -c $SOURCE -o Make/linux64GccDPOpt/scalarPimpleFoamLDMMS.o
In file included from scalarPimpleFoamLDMMS.C:54:0:
createFields.H: In function ‘int main(int, char**)’:
createFields.H:106:13: error: ‘class Foam::incompressible::turbulenceModel’ has no member named ‘registerScalarField’
 turbulence->registerScalarField(f,D_f);
             ^
scalarPimpleFoamLDMMS.C:113:44: error: ‘class Foam::incompressible::turbulenceModel’ has no member named ‘molecularDiffusivityCoeff’
         volScalarField DEff =  turbulence->molecularDiffusivityCoeff(f.name()) + turbulence->turbulentDiffusivityCoeff(f.name());
                                            ^
scalarPimpleFoamLDMMS.C:113:94: error: ‘class Foam::incompressible::turbulenceModel’ has no member named ‘turbulentDiffusivityCoeff’
         volScalarField DEff =  turbulence->molecularDiffusivityCoeff(f.name()) + turbulence->turbulentDiffusivityCoeff(f.name());
                                                                                              ^
scalarPimpleFoamLDMMS.C:118:29: error: ‘class Foam::incompressible::turbulenceModel’ has no member named ‘divFeff’
               + turbulence->divFeff(f)
                             ^
make[1]: *** [Make/linux64GccDPOpt/scalarPimpleFoamLDMMS.o] Error 1
make[1]: Target `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/bin/scalarPimpleFoamLDMMS' not remade because of errors.
make[1]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/solvers/scalarPimpleFoamLDMMS'
make: *** [scalarPimpleFoamLDMMS] Error 2
make[1]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/solvers/scalarPimpleFoamMFM'
SOURCE=scalarPimpleFoamMFM.C ;  g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-100 -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/turbulenceModels/incompressible/turbulenceModel -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/transportModels -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/transportModels/incompressible/singlePhaseTransportModel -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/turbulenceModels/LES/LESfilters/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/finiteVolume/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/meshTools/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/fvOptions/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/sampling/lnInclude -IlnInclude -I. -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/OpenFOAM/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/OSspecific/POSIX/lnInclude   -fPIC -c $SOURCE -o Make/linux64GccDPOpt/scalarPimpleFoamMFM.o
In file included from scalarPimpleFoamMFM.C:54:0:
createFields.H: In function ‘int main(int, char**)’:
createFields.H:106:13: error: ‘class Foam::incompressible::turbulenceModel’ has no member named ‘registerScalarField’
 turbulence->registerScalarField(f,D_f);
             ^
scalarPimpleFoamMFM.C:113:44: error: ‘class Foam::incompressible::turbulenceModel’ has no member named ‘molecularDiffusivityCoeff’
         volScalarField DEff =  turbulence->molecularDiffusivityCoeff(f.name()) + turbulence->turbulentDiffusivityCoeff(f.name());
                                            ^
scalarPimpleFoamMFM.C:113:94: error: ‘class Foam::incompressible::turbulenceModel’ has no member named ‘turbulentDiffusivityCoeff’
         volScalarField DEff =  turbulence->molecularDiffusivityCoeff(f.name()) + turbulence->turbulentDiffusivityCoeff(f.name());
                                                                                              ^
scalarPimpleFoamMFM.C:118:29: error: ‘class Foam::incompressible::turbulenceModel’ has no member named ‘divFeff’
               + turbulence->divFeff(f)
                             ^
make[1]: *** [Make/linux64GccDPOpt/scalarPimpleFoamMFM.o] Error 1
make[1]: Target `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/bin/scalarPimpleFoamMFM' not remade because of errors.
make[1]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/solvers/scalarPimpleFoamMFM'
make: *** [scalarPimpleFoamMFM] Error 2
make: Target `application' not remade because of errors.
+ cd applications
+ wmake all utilities
make[1]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing'
make[2]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/POD'
make[3]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/POD/scalarSnapshots'
g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-100 -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/libLEMOS-2.3.x/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/finiteVolume/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/meshTools/lnInclude -IlnInclude -I. -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/OpenFOAM/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/OSspecific/POSIX/lnInclude   -fPIC -Xlinker --add-needed -Xlinker --no-as-needed Make/linux64GccDPOpt/scalarSnapshots.o -L/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/lib \
         -lfiniteVolume -lmeshTools -lLEMOS-2.3.x -lODE -lOpenFOAM -ldl   -lm -o /home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/bin/scalarSnapshots
/usr/bin/ld: cannot find -lLEMOS-2.3.x
collect2: error: ld returned 1 exit status
make[3]: *** [/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/bin/scalarSnapshots] Error 1
make[3]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/POD/scalarSnapshots'
make[2]: *** [scalarSnapshots] Error 2
make[3]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/POD/vectorSnapshots'
g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-100 -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/libLEMOS-2.3.x/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/finiteVolume/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/meshTools/lnInclude -IlnInclude -I. -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/OpenFOAM/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/OSspecific/POSIX/lnInclude   -fPIC -Xlinker --add-needed -Xlinker --no-as-needed Make/linux64GccDPOpt/vectorSnapshots.o -L/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/lib \
         -lfiniteVolume -lmeshTools -lLEMOS-2.3.x -lODE -lOpenFOAM -ldl   -lm -o /home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/bin/vectorSnapshots
/usr/bin/ld: cannot find -lLEMOS-2.3.x
collect2: error: ld returned 1 exit status
make[3]: *** [/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/bin/vectorSnapshots] Error 1
make[3]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/POD/vectorSnapshots'
make[2]: *** [vectorSnapshots] Error 2
make[2]: Target `application' not remade because of errors.
make[2]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/POD'
make[1]: *** [POD] Error 2
make[2]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/miscellaneous'
make[3]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/miscellaneous/postChannelExt'
make[3]: `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/bin/postChannelExt' is up to date.
make[3]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/miscellaneous/postChannelExt'
make[2]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/miscellaneous'
make[2]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/velocityField'
make[3]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/velocityField/LambdaCI'
make[3]: `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/bin/LambdaCI' is up to date.
make[3]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/velocityField/LambdaCI'
make[2]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/velocityField'
make[1]: Target `application' not remade because of errors.
make[1]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing'
make: *** [postProcessing] Error 2
make: Target `application' not remade because of errors.
I am a newbie in OF and don't really understand where the problem lies. Could anyone help me with this issue?!
Thanks
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Old   July 1, 2015, 03:18
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Hannes Kröger
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I see two problems:

1. Gnu Scientific Library (gsl) is not installed. Please install the "-dev" package of your distribution.

Quote:
Originally Posted by syavash View Post
Code:
/usr/bin/ld: cannot find -lgsl
2. You need to apply a patch to the OpenFOAM source to be able to compile the turbulence models. This patch adds some helper functions to the LESModel base class which were required for implementation of the DMM model.
There is a script "applyPatches" for that. Note that this requires write access to the OpenFOAM sources, i.e. you need to have OpenFOAM installed in your $HOME directory.

Quote:
Originally Posted by syavash View Post
Code:
createFields.H: In function ‘int main(int, char**)’:
createFields.H:106:13: error: ‘class Foam::incompressible::turbulenceModel’ has no member named ‘registerScalarField’
 turbulence->registerScalarField(f,D_f);
             ^
Hope that helps.

Regards, Hannes
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Old   July 1, 2015, 04:14
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Syavash Asgari
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Quote:
Originally Posted by hannes View Post
I see two problems:

1. Gnu Scientific Library (gsl) is not installed. Please install the "-dev" package of your distribution.



2. You need to apply a patch to the OpenFOAM source to be able to compile the turbulence models. This patch adds some helper functions to the LESModel base class which were required for implementation of the DMM model.
There is a script "applyPatches" for that. Note that this requires write access to the OpenFOAM sources, i.e. you need to have OpenFOAM installed in your $HOME directory.





Hope that helps.

Regards, Hannes

Dear Hannes,

Thanks for quick reply!
1-I have installed OF in my $Home directory and "applyPatches" script seems to execute properly.
2- As you suggested, I installed GNU Scientific Library (gsl 1.16) but now another error message appears after running Allwmake:

Code:
+ cd applications
+ wmake all solvers
make[1]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/solvers/basic'
make[2]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/solvers/basic/PODSolver'
g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-100 -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/libLEMOS-2.3.x/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/finiteVolume/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/meshTools/lnInclude  -IlnInclude -I. -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/OpenFOAM/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/OSspecific/POSIX/lnInclude   -fPIC -Xlinker --add-needed -Xlinker --no-as-needed Make/linux64GccDPOpt/PODSolver.o -L/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/lib \
         -lfiniteVolume -lmeshTools -lLEMOS-2.3.x -lOpenFOAM -ldl   -lm -o /home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/bin/PODSolver
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_zher2k'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_dtrsm'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_ctrmm'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_csyrk'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_dsyr2k'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_dsyr'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_sgemm'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_srot'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_dzasum'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_idamax'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_csyr2k'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_zhemv'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_drotm'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_dsymm'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_zsyrk'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_sdsdot'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_zgerc'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_ssyr2'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_cher'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_zsymm'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_ztrsm'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_cher2k'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_sasum'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_ztrsv'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_ccopy'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_ztrmm'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_dger'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_dtrmv'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_izamax'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_zdscal'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_sdot'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_zdotu_sub'
collect2: error: ld returned 1 exit status
make[2]: *** [/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/bin/PODSolver] Error 1
make[2]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/solvers/basic/PODSolver'
make[1]: *** [PODSolver] Error 2
make[1]: Target `application' not remade because of errors.
make[1]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/solvers/basic'
make: *** [basic] Error 2
make[1]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/solvers/scalarPimpleFoam'
make[1]: `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/bin/scalarPimpleFoam' is up to date.
make[1]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/solvers/scalarPimpleFoam'
make[1]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/solvers/scalarPimpleFoamLDMMS'
SOURCE=scalarPimpleFoamLDMMS.C ;  g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-100 -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/turbulenceModels/incompressible/turbulenceModel -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/transportModels -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/transportModels/incompressible/singlePhaseTransportModel -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/turbulenceModels/LES/LESfilters/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/finiteVolume/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/meshTools/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/fvOptions/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/sampling/lnInclude -IlnInclude -I. -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/OpenFOAM/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/OSspecific/POSIX/lnInclude   -fPIC -c $SOURCE -o Make/linux64GccDPOpt/scalarPimpleFoamLDMMS.o
In file included from scalarPimpleFoamLDMMS.C:54:0:
createFields.H: In function ‘int main(int, char**)’:
createFields.H:106:13: error: ‘class Foam::incompressible::turbulenceModel’ has no member named ‘registerScalarField’
 turbulence->registerScalarField(f,D_f);
             ^
scalarPimpleFoamLDMMS.C:113:44: error: ‘class Foam::incompressible::turbulenceModel’ has no member named ‘molecularDiffusivityCoeff’
         volScalarField DEff =  turbulence->molecularDiffusivityCoeff(f.name()) + turbulence->turbulentDiffusivityCoeff(f.name());
                                            ^
scalarPimpleFoamLDMMS.C:113:94: error: ‘class Foam::incompressible::turbulenceModel’ has no member named ‘turbulentDiffusivityCoeff’
         volScalarField DEff =  turbulence->molecularDiffusivityCoeff(f.name()) + turbulence->turbulentDiffusivityCoeff(f.name());
                                                                                              ^
scalarPimpleFoamLDMMS.C:118:29: error: ‘class Foam::incompressible::turbulenceModel’ has no member named ‘divFeff’
               + turbulence->divFeff(f)
                             ^
make[1]: *** [Make/linux64GccDPOpt/scalarPimpleFoamLDMMS.o] Error 1
make[1]: Target `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/bin/scalarPimpleFoamLDMMS' not remade because of errors.
make[1]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/solvers/scalarPimpleFoamLDMMS'
make: *** [scalarPimpleFoamLDMMS] Error 2
make[1]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/solvers/scalarPimpleFoamMFM'
SOURCE=scalarPimpleFoamMFM.C ;  g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-100 -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/turbulenceModels/incompressible/turbulenceModel -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/transportModels -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/transportModels/incompressible/singlePhaseTransportModel -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/turbulenceModels/LES/LESfilters/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/finiteVolume/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/meshTools/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/fvOptions/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/sampling/lnInclude -IlnInclude -I. -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/OpenFOAM/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/OSspecific/POSIX/lnInclude   -fPIC -c $SOURCE -o Make/linux64GccDPOpt/scalarPimpleFoamMFM.o
In file included from scalarPimpleFoamMFM.C:54:0:
createFields.H: In function ‘int main(int, char**)’:
createFields.H:106:13: error: ‘class Foam::incompressible::turbulenceModel’ has no member named ‘registerScalarField’
 turbulence->registerScalarField(f,D_f);
             ^
scalarPimpleFoamMFM.C:113:44: error: ‘class Foam::incompressible::turbulenceModel’ has no member named ‘molecularDiffusivityCoeff’
         volScalarField DEff =  turbulence->molecularDiffusivityCoeff(f.name()) + turbulence->turbulentDiffusivityCoeff(f.name());
                                            ^
scalarPimpleFoamMFM.C:113:94: error: ‘class Foam::incompressible::turbulenceModel’ has no member named ‘turbulentDiffusivityCoeff’
         volScalarField DEff =  turbulence->molecularDiffusivityCoeff(f.name()) + turbulence->turbulentDiffusivityCoeff(f.name());
                                                                                              ^
scalarPimpleFoamMFM.C:118:29: error: ‘class Foam::incompressible::turbulenceModel’ has no member named ‘divFeff’
               + turbulence->divFeff(f)
                             ^
make[1]: *** [Make/linux64GccDPOpt/scalarPimpleFoamMFM.o] Error 1
make[1]: Target `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/bin/scalarPimpleFoamMFM' not remade because of errors.
make[1]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/solvers/scalarPimpleFoamMFM'
make: *** [scalarPimpleFoamMFM] Error 2
make: Target `application' not remade because of errors.
+ cd applications
+ wmake all utilities
make[1]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing'
make[2]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/POD'
make[3]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/POD/scalarSnapshots'
g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-100 -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/libLEMOS-2.3.x/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/finiteVolume/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/meshTools/lnInclude -IlnInclude -I. -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/OpenFOAM/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/OSspecific/POSIX/lnInclude   -fPIC -Xlinker --add-needed -Xlinker --no-as-needed Make/linux64GccDPOpt/scalarSnapshots.o -L/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/lib \
         -lfiniteVolume -lmeshTools -lLEMOS-2.3.x -lODE -lOpenFOAM -ldl   -lm -o /home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/bin/scalarSnapshots
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_zher2k'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_dtrsm'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_zhemm'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_sdot'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_zdotu_sub'
collect2: error: ld returned 1 exit status
make[3]: *** [/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/bin/scalarSnapshots] Error 1
make[3]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/POD/scalarSnapshots'
make[2]: *** [scalarSnapshots] Error 2
make[3]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/POD/vectorSnapshots'
g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-100 -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/libLEMOS-2.3.x/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/finiteVolume/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/meshTools/lnInclude -IlnInclude -I. -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/OpenFOAM/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/OSspecific/POSIX/lnInclude   -fPIC -Xlinker --add-needed -Xlinker --no-as-needed Make/linux64GccDPOpt/vectorSnapshots.o -L/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/lib \
         -lfiniteVolume -lmeshTools -lLEMOS-2.3.x -lODE -lOpenFOAM -ldl   -lm -o /home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/bin/vectorSnapshots
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_zher2k''
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_zdotc_sub'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_strmm'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_csymm'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_sger'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_zscal'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_srotg'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_strmv'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_cgerc'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_saxpy'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_cherk'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_dsdot'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_ssymv'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_zher2'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_ddot'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_dnrm2'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_cgemv'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_zgemv'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_ctrmv'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_cswap'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_zgemm'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_ctrmm'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_csyrk'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_dsyr2k'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_dsyr'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_sgemm'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_srot'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_dzasum'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_idamax'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_csyr2k'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_zhemv'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_drotm'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_dsymm'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_zsyrk'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_sdsdot'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_zgerc'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_ssyr2'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_cher'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_zsymm'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_ztrsm'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_cher2k'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_sdot'
//usr/local/lib/libgsl.so.0: undefined reference to `cblas_zdotu_sub'
collect2: error: ld returned 1 exit status
make[3]: *** [/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/bin/vectorSnapshots] Error 1
make[3]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/POD/vectorSnapshots'
make[2]: *** [vectorSnapshots] Error 2
make[2]: Target `application' not remade because of errors.
make[2]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/POD'
make[1]: *** [POD] Error 2
make[2]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/miscellaneous'
make[3]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/miscellaneous/postChannelExt'
make[3]: `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/bin/postChannelExt' is up to date.
make[3]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/miscellaneous/postChannelExt'
make[2]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/miscellaneous'
make[2]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/velocityField'
make[3]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/velocityField/LambdaCI'
make[3]: `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/bin/LambdaCI' is up to date.
make[3]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/velocityField/LambdaCI'
make[2]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/velocityField'
make[1]: Target `application' not remade because of errors.
make[1]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing'
make: *** [postProcessing] Error 2
make: Target `application' not remade because of errors.
Do you have any idea how to resolve that??!

Regards
Syavash
Last edited by syavash; July 1, 2015 at 05:30.
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Old   July 1, 2015, 04:21
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  #7
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Matthias Walter
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You have to add "-lgslcblas" to the libraries in the option file. Unfortunately, the cblas interfaces have been outsourced into a separate library.

I will add the missing dependency to the repository as soon as possible.


Good Luck

Matthias
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Old   July 1, 2015, 05:52
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Syavash Asgari
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Quote:
Originally Posted by matthias View Post
You have to add "-lgslcblas" to the libraries in the option file. Unfortunately, the cblas interfaces have been outsourced into a separate library.

I will add the missing dependency to the repository as soon as possible.


Good Luck

Matthias
Dear Matthias,

Thank you, I did as you suggested and included "-lgslcblas" after "-lgsl" in the options file, but some of the errors still remain.
When I run applyPatches, the following message appears indicating it is working properly (I suppose!):

Code:
syavash@syavash-VPCF11DGX:~/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x$ ./applyPatches 
patching file /home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/turbulenceModels/LES/LESfilters/LESfilter/LESfilter.H
Reversed (or previously applied) patch detected!  Skipping patch.
1 out of 1 hunk ignored -- saving rejects to file /home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/turbulenceModels/LES/LESfilters/LESfilter/LESfilter.H.rej
patching file /home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/turbulenceModels/LES/LESfilters/LESfilter/LESfilter.C
Reversed (or previously applied) patch detected!  Skipping patch.
1 out of 1 hunk ignored -- saving rejects to file /home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/turbulenceModels/LES/LESfilters/LESfilter/LESfilter.C.rej
+ LES/Allwmake
+ wmakeLnInclude ../incompressible/LES
+ wmake libso LESfilters
'/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/lib/libLESfilters.so' is up to date.
+ wmake libso LESdeltas
'/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/lib/libLESdeltas.so' is up to date.
+ incompressible/Allwmake
+ wmake libso turbulenceModel
'/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/lib/libincompressibleTurbulenceModel.so' is up to date.
+ wmake libso RAS
'/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/lib/libincompressibleRASModels.so' is up to date.
+ wmake libso LES
'/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/lib/libincompressibleLESModels.so' is up to date.
+ compressible/Allwmake
+ wmake libso turbulenceModel
'/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/lib/libcompressibleTurbulenceModel.so' is up to date.
+ wmake libso RAS
'/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/lib/libcompressibleRASModels.so' is up to date.
+ wmake libso LES
'/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/lib/libcompressibleLESModels.so' is up to date.
+ wmake libso derivedFvPatchFields
'/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/lib/libturbulenceDerivedFvPatchFields.so' is up to date.
But when I run Allwmake, now the following message appears which includes some errors:

Code:
syavash@syavash-VPCF11DGX:~/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x$ ./Allwmake
+ wmake libso libLEMOS-2.3.x
'/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/lib/libLEMOS-2.3.x.so' is up to date.
+ cd applications
+ wmake all solvers
make[1]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/solvers/basic'
make[2]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/solvers/basic/PODSolver'
make[2]: `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/bin/PODSolver' is up to date.
make[2]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/solvers/basic/PODSolver'
make[1]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/solvers/basic'
make[1]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/solvers/scalarPimpleFoam'
make[1]: `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/bin/scalarPimpleFoam' is up to date.
make[1]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/solvers/scalarPimpleFoam'
make[1]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/solvers/scalarPimpleFoamLDMMS'
SOURCE=scalarPimpleFoamLDMMS.C ;  g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-100 -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/turbulenceModels/incompressible/turbulenceModel -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/transportModels -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/transportModels/incompressible/singlePhaseTransportModel -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/turbulenceModels/LES/LESfilters/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/finiteVolume/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/meshTools/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/fvOptions/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/sampling/lnInclude -IlnInclude -I. -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/OpenFOAM/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/OSspecific/POSIX/lnInclude   -fPIC -c $SOURCE -o Make/linux64GccDPOpt/scalarPimpleFoamLDMMS.o
In file included from scalarPimpleFoamLDMMS.C:54:0:
createFields.H: In function ‘int main(int, char**)’:
createFields.H:106:13: error: ‘class Foam::incompressible::turbulenceModel’ has no member named ‘registerScalarField’
 turbulence->registerScalarField(f,D_f);
             ^
scalarPimpleFoamLDMMS.C:113:44: error: ‘class Foam::incompressible::turbulenceModel’ has no member named ‘molecularDiffusivityCoeff’
         volScalarField DEff =  turbulence->molecularDiffusivityCoeff(f.name()) + turbulence->turbulentDiffusivityCoeff(f.name());
                                            ^
scalarPimpleFoamLDMMS.C:113:94: error: ‘class Foam::incompressible::turbulenceModel’ has no member named ‘turbulentDiffusivityCoeff’
         volScalarField DEff =  turbulence->molecularDiffusivityCoeff(f.name()) + turbulence->turbulentDiffusivityCoeff(f.name());
                                                                                              ^
scalarPimpleFoamLDMMS.C:118:29: error: ‘class Foam::incompressible::turbulenceModel’ has no member named ‘divFeff’
               + turbulence->divFeff(f)
                             ^
make[1]: *** [Make/linux64GccDPOpt/scalarPimpleFoamLDMMS.o] Error 1
make[1]: Target `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/bin/scalarPimpleFoamLDMMS' not remade because of errors.
make[1]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/solvers/scalarPimpleFoamLDMMS'
make: *** [scalarPimpleFoamLDMMS] Error 2
make[1]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/solvers/scalarPimpleFoamMFM'
SOURCE=scalarPimpleFoamMFM.C ;  g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3  -DNoRepository -ftemplate-depth-100 -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/turbulenceModels/incompressible/turbulenceModel -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/transportModels -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/transportModels/incompressible/singlePhaseTransportModel -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/turbulenceModels/LES/LESfilters/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/finiteVolume/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/meshTools/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/fvOptions/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/sampling/lnInclude -IlnInclude -I. -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/OpenFOAM/lnInclude -I/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/OSspecific/POSIX/lnInclude   -fPIC -c $SOURCE -o Make/linux64GccDPOpt/scalarPimpleFoamMFM.o
In file included from scalarPimpleFoamMFM.C:54:0:
createFields.H: In function ‘int main(int, char**)’:
createFields.H:106:13: error: ‘class Foam::incompressible::turbulenceModel’ has no member named ‘registerScalarField’
 turbulence->registerScalarField(f,D_f);
             ^
scalarPimpleFoamMFM.C:113:44: error: ‘class Foam::incompressible::turbulenceModel’ has no member named ‘molecularDiffusivityCoeff’
         volScalarField DEff =  turbulence->molecularDiffusivityCoeff(f.name()) + turbulence->turbulentDiffusivityCoeff(f.name());
                                            ^
scalarPimpleFoamMFM.C:113:94: error: ‘class Foam::incompressible::turbulenceModel’ has no member named ‘turbulentDiffusivityCoeff’
         volScalarField DEff =  turbulence->molecularDiffusivityCoeff(f.name()) + turbulence->turbulentDiffusivityCoeff(f.name());
                                                                                              ^
scalarPimpleFoamMFM.C:118:29: error: ‘class Foam::incompressible::turbulenceModel’ has no member named ‘divFeff’
               + turbulence->divFeff(f)
                             ^
make[1]: *** [Make/linux64GccDPOpt/scalarPimpleFoamMFM.o] Error 1
make[1]: Target `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/bin/scalarPimpleFoamMFM' not remade because of errors.
make[1]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/solvers/scalarPimpleFoamMFM'
make: *** [scalarPimpleFoamMFM] Error 2
make: Target `application' not remade because of errors.
+ cd applications
+ wmake all utilities
make[1]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing'
make[2]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/POD'
make[3]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/POD/scalarSnapshots'
make[3]: `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/bin/scalarSnapshots' is up to date.
make[3]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/POD/scalarSnapshots'
make[3]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/POD/vectorSnapshots'
make[3]: `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/bin/vectorSnapshots' is up to date.
make[3]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/POD/vectorSnapshots'
make[2]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/POD'
make[2]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/miscellaneous'
make[3]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/miscellaneous/postChannelExt'
make[3]: `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/bin/postChannelExt' is up to date.
make[3]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/miscellaneous/postChannelExt'
make[2]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/miscellaneous'
make[2]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/velocityField'
make[3]: Entering directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/velocityField/LambdaCI'
make[3]: `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/platforms/linux64GccDPOpt/bin/LambdaCI' is up to date.
make[3]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/velocityField/LambdaCI'
make[2]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing/velocityField'
make[1]: Leaving directory `/home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/LEMOS-2.3.x/applications/utilities/postProcessing'
How should I fix this problem?!

Thanks
Syavash
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Old   July 1, 2015, 06:29
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Matthias Walter
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Dear Syavash,

as long as you don't need the turbulence models in the library you can ignore these errors. The library seems to be correctly build.

There are some missing dependencies in the original turbulence models class of OpenFOAM. I have to modify the applyPatches to add these dependencies but this needs some time. I will do it till end of the week.


Best

Matthias
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Old   July 1, 2015, 09:25
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Syavash Asgari
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Quote:
Originally Posted by matthias View Post
Dear Syavash,

as long as you don't need the turbulence models in the library you can ignore these errors. The library seems to be correctly build.

There are some missing dependencies in the original turbulence models class of OpenFOAM. I have to modify the applyPatches to add these dependencies but this needs some time. I will do it till end of the week.


Best

Matthias
Dear Matthias,

I appreciate your comment, but the problem still persists when running solver "pisoFoam".
I have added inlet boundary condition as follows:

Code:
INLET
    {
    type decayingTurbulenceInflowGenerator;
    direction 1;
    LField uniform 0.00315;
    refField        uniform ( 6.355 0 0 );
    value           uniform ( 6.355 0 0 );
    }
I think it's OK, but when I run pisoFoam solver, the following message appears:

Code:
syavash@syavash-VPCF11DGX:~/OpenFOAM/syavash-2.3.1/run/tutorials/incompressible/pisoFoam/les/pitzDaily-94-3-24$ pisoFoam 
/*---------------------------------------------------------------------------*\
| =========                 |                                                 |
| \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox           |
|  \\    /   O peration     | Version:  2.3.1                                 |
|   \\  /    A nd           | Web:      www.OpenFOAM.org                      |
|    \\/     M anipulation  |                                                 |
\*---------------------------------------------------------------------------*/
Build  : 2.3.1-262087cdf8db
Exec   : pisoFoam
Date   : Jul 01 2015
Time   : 17:50:00
Host   : "syavash-VPCF11DGX"
PID    : 3380
Case   : /home/syavash/OpenFOAM/syavash-2.3.1/run/tutorials/incompressible/pisoFoam/les/pitzDaily-94-3-24
nProcs : 1
sigFpe : Enabling floating point exception trapping (FOAM_SIGFPE).
fileModificationChecking : Monitoring run-time modified files using timeStampMaster
allowSystemOperations : Allowing user-supplied system call operations

// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
Create time

Create mesh for time = 0

Reading field p

Reading field U



--> FOAM FATAL IO ERROR: 
Unknown patchField type decayingTurbulenceInflowGenerator for patch type patch

Valid patchField types are :

75
(
SRFFreestreamVelocity
SRFVelocity
activeBaffleVelocity
activePressureForceBaffleVelocity
advective
atmBoundaryLayerInletVelocity
calculated
codedFixedValue
codedMixed
cyclic
cyclicACMI
cyclicAMI
cyclicSlip
cylindricalInletVelocity
directionMixed
empty
externalCoupled
fixedGradient
fixedInternalValue
fixedJump
fixedJumpAMI
fixedMean
fixedNormalInletOutletVelocity
fixedNormalSlip
fixedValue
flowRateInletVelocity
fluxCorrectedVelocity
freestream
inletOutlet
interstitialInletVelocity
kqRWallFunction
mapped
mappedField
mappedFixedInternalValue
mappedFixedPushedInternalValue
mappedFlowRate
mappedVelocityFlux
mixed
movingWallVelocity
nonuniformTransformCyclic
oscillatingFixedValue
outletInlet
outletMappedUniformInlet
outletPhaseMeanVelocity
partialSlip
pressureDirectedInletOutletVelocity
pressureDirectedInletVelocity
pressureInletOutletParSlipVelocity
pressureInletOutletVelocity
pressureInletUniformVelocity
pressureInletVelocity
pressureNormalInletOutletVelocity
processor
processorCyclic
rotatingPressureInletOutletVelocity
rotatingWallVelocity
sliced
slip
supersonicFreestream
surfaceNormalFixedValue
swirlFlowRateInletVelocity
symmetry
symmetryPlane
timeVaryingMappedFixedValue
translatingWallVelocity
turbulentInlet
uniformFixedGradient
uniformFixedValue
uniformInletOutlet
uniformJump
uniformJumpAMI
variableHeightFlowRateInletVelocity
waveTransmissive
wedge
zeroGradient
)


file: /home/syavash/OpenFOAM/syavash-2.3.1/run/tutorials/incompressible/pisoFoam/les/pitzDaily-94-3-24/0/U.boundaryField.INLET from line 27 to line 31.

    From function fvPatchField<Type>::New(const fvPatch&, const DimensionedField<Type, volMesh>&, const dictionary&)
    in file /home/syavash/OpenFOAM/OpenFOAM-2.3.1/src/finiteVolume/lnInclude/fvPatchFieldNew.C at line 143.

FOAM exiting
It can be seen that OF does not recognize inflowgenerator B.C.

Another question, Shouldn't I add something to controlDict??!

P.S.: Isn't it strange that other people did not encounter such problems as I did??!

Regards,
Syavash
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Old   July 1, 2015, 09:51
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Syavash Asgari
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I wanted to add I am running OF 2.3.1 under Ubuntu 14.04, Could it be making troubles??
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Old   July 1, 2015, 10:07
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Syavash Asgari
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Quote:
Originally Posted by syavash View Post
I wanted to add I am running OF 2.3.1 under Ubuntu 14.04, Could it be making troubles??

Knock, knock, Great!

The problem was that I should have added the following line to the controlDict,

Code:
libs            ("libLEMOS-2.3.x.so");
Dear Matthias and Hannes, Thank you.

Regards,
Syavash
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Old   February 27, 2016, 17:48
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Dear Matthias,

For the boundary condition of "inflowGenerator", is there the corresponding version for OpenFOAM 3.0.0? Thank you.

Quote:
Originally Posted by matthias View Post
Dear Syavash,

as long as you don't need the turbulence models in the library you can ignore these errors. The library seems to be correctly build.

There are some missing dependencies in the original turbulence models class of OpenFOAM. I have to modify the applyPatches to add these dependencies but this needs some time. I will do it till end of the week.


Best

Matthias
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Old   July 2, 2016, 09:15
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Timofey Mukha
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Hello everyone!

I am wondering how does the new divergence-free SEM ,method in the newest +release of OF correlate to the latest work in LEMOS.
What Hannes presented in the OF-workshop this week looked very similar to what is described in the release statement, at least to a non-expert .

Best,
Timofey
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Old   July 5, 2016, 02:54
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Hannes Kröger
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Dear Timofey,

the DFSEM is a parallel development to our inflow generator. Although the basic idea is in principle the same, the differences are in the velocity distribution inside the spots (or synthetic eddies).

From the latest paper that I'm aware of, I remember that there were some severe restrictions in the realizable ansiotropy of the DFSEM-generated turbulence.

But I just got the code and I will take a deeper look now.

Regards, Hannes
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Old   November 13, 2017, 08:23
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Xu Huang
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Quote:
Originally Posted by hannes View Post
Dear Timofey,

the DFSEM is a parallel development to our inflow generator. Although the basic idea is in principle the same, the differences are in the velocity distribution inside the spots (or synthetic eddies).

From the latest paper that I'm aware of, I remember that there were some severe restrictions in the realizable ansiotropy of the DFSEM-generated turbulence.

But I just got the code and I will take a deeper look now.

Regards, Hannes
Hi Hannes,

I also your post, do you know how to solve this? I am using version OF-2.3.x.

Thank you.

Regards,

Xu
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Old   November 13, 2017, 08:26
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Xu Huang
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I am sorry for this repeating replies. It seems I made a mess between threads. I cannot delete this post.
Sorry.

Cheers,
Xu
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Old   October 11, 2018, 05:14
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Ruiyan Chen
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I've read all the above threads and the corresponding papers. I complied this BC in OF-4.x without any problem (cheers), and I'm testing it using a simple pipe flow(with 7.2mm diameter and 50mm length) with the Smagorinsky model.

The fluctuations at the velocity-inlet are fine at all instances (random and quite visible), but they die out pretty quickly downstream. At about 20mm (40% length), the axial velocity becomes flat in the middle section of the pipe. Any ideas how this can be fixed? Right now I'm using ~120,000 cells and my intention is to limit this number under ~300,000. I heard that the cell size in the axial direction matters the most and they should be relatively small, is this correct?
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Old   October 11, 2018, 07:38
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Hi Ruiyan,

Based on the dimensions you've provided for the pipe and the total number of cells, it looks like the grid may not be the issue. However, do check your grid, since LES is very sensitive to the cell aspect ratio. High aspect ratio cells near the wall will definitely cause perturbations to die out.

I believe it's to do with the SGS model you are using. The Smagorinsky model is dissipative. Try using a dynamic model, for instance, the Dynamic kEquation Model in OF4x.

This is what I have found in literature about the limitations of Smagorinsky model:

The Smagorinsky model is based on the assumption that the small scales are in equilibrium and dissipate entirely and instantaneously the energy they receive from the large scales (see Turbulent Energy Cascade). However, due to its overly dissipative limitation, i.e. the excessive extraction of energy from the large scales, the perturbations/disturbances tend to die out. Likewise, in the case of laminar-turbulent transition, the Smagorinsky model fails to differentiate between laminar and turbulent flows, and therefore the turbulent eddy viscosity remains active throughout the whole domain. This causes the linear disturbances to decay prior
to transition and the transition location is not predicted accurately.
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Old   October 11, 2018, 21:36
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Ruiyan Chen
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Hi Abhi,

Thank you for reading my post. You may be right, I tried the same grid with Smagorinsky model in ANSYS Fluent and the perturbation also die out quickly downstream. I will further improve my mesh and test it using different SGS model as you suggested.

About the cell aspect ratio, is there an optimal value (or just a rule of a thumb) you recommend? I think most meshing softwares use a value around 1.20.
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